genome.fa.s2304.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002304.1 Hibiscus syriacus cultivar Beakdansim tig00004693_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95087

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4189--4228	3	13.7	3	94	5	73	32	0	0	67	0.91
8571--8640	24	2.8	24	89	4	104	41	4	0	54	1.20
11428--11535	48	2.2	49	85	5	137	18	29	18	33	1.95
26876--26920	22	2.0	22	87	12	65	28	8	17	44	1.79
28844--29152	154	2.0	154	100	0	618	29	16	20	33	1.94
33531--33556	13	2.0	13	100	0	52	30	15	23	30	1.95
45910--45942	2	16.5	2	100	0	66	51	0	0	48	1.00
45940--45966	3	9.0	3	100	0	54	66	0	0	33	0.92
46258--46297	2	20.0	2	100	0	80	50	0	0	50	1.00
47978--48020	15	2.9	15	100	0	86	60	6	4	27	1.43
48176--48214	18	2.1	19	85	4	53	43	2	5	48	1.38
48576--48710	20	6.7	20	79	7	130	33	22	18	25	1.97
48586--48701	61	1.9	61	90	0	187	33	22	18	25	1.96
48880--48923	22	2.0	22	95	0	79	20	45	15	18	1.85
49359--49413	25	2.2	24	78	15	58	20	9	18	52	1.71
50542--50586	18	2.5	18	92	0	81	28	44	13	13	1.81
51062--51128	20	3.4	20	81	2	73	38	23	22	14	1.92
51117--51174	14	3.9	14	79	16	71	48	24	17	10	1.78
51101--51191	32	2.8	33	94	3	166	47	21	18	12	1.81
51203--51342	20	7.9	18	73	18	98	12	20	22	44	1.85
51228--51284	14	3.7	14	75	20	60	10	15	22	50	1.74
51208--51300	33	2.8	33	98	1	179	12	19	21	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53210--53245	14	2.6	14	90	0	54	30	0	22	47	1.52
53373--53446	19	4.5	16	81	15	57	45	17	21	14	1.84
53382--53449	19	3.8	19	85	14	101	47	17	22	13	1.82
53470--53564	20	4.8	20	75	10	86	16	20	21	42	1.90
53471--53564	40	2.3	40	80	3	100	17	20	21	41	1.90
53778--53869	20	4.6	20	73	8	69	20	17	21	40	1.92
53854--53905	20	2.5	21	81	3	61	23	23	15	38	1.92
54102--54135	12	2.9	12	86	4	52	17	41	5	35	1.74
54690--54743	24	2.2	24	90	0	81	20	14	22	42	1.88
54918--54942	12	2.1	12	100	0	50	72	0	28	0	0.86
57234--57364	19	7.7	19	62	23	76	43	19	22	15	1.87
57234--57360	33	3.8	33	84	4	184	43	18	22	15	1.88
57237--57367	66	2.0	66	95	0	235	42	18	22	16	1.89
58900--59050	42	3.6	40	74	10	133	23	18	35	22	1.95
58930--59104	84	2.1	84	95	3	325	25	17	36	21	1.94
58939--59102	42	3.9	42	81	0	193	23	17	37	21	1.93
59324--59508	91	2.0	91	89	6	284	48	18	11	21	1.79
61200--61264	20	3.3	19	85	6	67	40	23	21	15	1.91
61221--61264	19	2.2	20	92	4	72	36	27	20	15	1.93
61881--61956	40	1.9	40	88	0	116	21	18	23	36	1.95
61861--61953	20	4.7	20	80	10	91	23	19	25	31	1.98
62024--62064	21	2.0	21	85	0	55	34	31	17	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65328--65372	16	2.8	16	86	6	65	31	17	8	42	1.80
66346--66396	21	2.4	21	76	0	57	21	0	27	50	1.48
66481--66550	2	34.0	2	91	5	113	47	1	1	50	1.19
66705--66822	2	59.5	2	82	11	145	46	4	1	47	1.32
66883--66935	4	13.2	4	87	0	52	41	22	9	26	1.84
66886--66957	12	6.5	12	69	18	57	38	26	11	23	1.88
66918--66963	22	2.1	22	100	0	92	36	32	13	17	1.88
66913--66967	26	2.1	26	93	0	92	38	32	12	16	1.86
66990--67076	4	21.8	4	92	0	147	27	49	21	1	1.57
67324--67381	26	2.2	27	84	3	73	24	25	0	50	1.50
68548--68597	26	2.0	25	84	4	64	24	28	18	30	1.97
72121--72187	21	3.2	21	66	19	59	20	20	29	28	1.98
72121--72243	41	3.2	41	72	22	140	22	22	25	29	1.99
73017--73043	6	4.5	6	100	0	54	0	14	51	33	1.43
73116--73399	41	6.9	41	91	0	433	32	24	20	22	1.97
73114--73399	123	2.3	125	92	1	477	32	24	19	22	1.97
76847--76947	3	33.3	3	97	2	193	33	0	66	0	0.92
78085--78133	21	2.3	20	76	10	53	34	10	16	38	1.82
82914--83022	31	3.5	31	98	0	209	34	3	25	35	1.74
92662--92696	2	17.5	2	100	0	70	51	0	0	48	1.00
92903--92963	24	2.6	24	73	2	61	65	3	8	22	1.34
92963--92989	14	1.9	14	100	0	54	59	3	7	29	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92984--93047	25	2.6	25	82	5	76	67	3	9	20	1.33
93013--93078	33	2.0	33	93	0	114	66	4	10	18	1.38
94093--94492	45	8.8	45	91	2	624	32	20	23	24	1.98
94446--94648	73	2.8	72	93	3	336	30	21	22	26	1.98
94522--94753	120	1.9	120	93	1	403	30	20	20	28	1.98
94599--94695	47	2.1	47	98	0	185	26	21	20	30	1.98
94409--94755	193	1.8	191	89	3	545	31	20	21	27	1.98

Tables:   1

The End!