genome.fa.s2305.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002305.1 Hibiscus syriacus cultivar Beakdansim tig00004695_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83125

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112--175	24	2.8	23	77	15	71	23	25	17	34	1.96
18748--19042	109	2.7	109	89	4	439	32	12	11	43	1.78
18941--19135	93	2.1	92	87	6	279	31	10	12	45	1.77
19445--19492	23	2.1	23	92	0	78	31	16	10	41	1.82
19452--19499	23	2.1	23	96	0	87	31	16	12	39	1.86
19538--19592	23	2.4	23	100	0	110	41	14	7	36	1.74
19442--19663	110	2.0	110	87	0	318	32	14	10	42	1.79
19983--20434	112	4.0	111	90	0	661	32	12	11	43	1.78
20340--20528	94	2.0	94	95	0	342	31	12	14	41	1.83
20434--20662	113	2.0	113	89	0	350	33	11	12	41	1.80
20228--20641	206	2.0	206	89	0	639	32	12	12	42	1.81
20983--21033	23	2.2	23	89	0	75	35	17	7	39	1.79
20958--21151	87	2.2	87	95	0	343	30	13	12	43	1.81
21416--21445	3	10.0	3	100	0	60	66	0	0	33	0.92
21444--21516	3	25.0	3	94	5	132	34	0	0	65	0.93
24305--24388	37	2.3	37	85	0	123	13	13	38	35	1.83
24485--24541	22	2.7	21	78	10	62	36	3	3	56	1.34
24967--25099	55	2.4	55	96	0	239	36	12	9	42	1.75
24602--25782	420	2.8	420	98	0	2272	39	10	10	39	1.74
25387--25519	55	2.4	55	97	0	248	35	12	9	42	1.76
30113--30169	23	2.8	19	72	23	53	17	21	10	50	1.75
30123--30175	23	2.3	23	100	0	106	16	22	7	52	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30132--30185	23	2.7	18	73	24	54	16	20	9	53	1.70
32254--32324	36	2.0	36	91	0	115	32	25	19	22	1.98
34270--34306	18	2.2	17	86	13	51	16	24	10	48	1.77
35266--35293	14	2.0	14	100	0	56	64	7	21	7	1.43
37155--37250	19	5.1	19	88	0	138	42	3	18	35	1.66
37155--37266	38	2.9	38	84	5	111	43	4	17	33	1.69
37221--37271	19	2.7	19	81	0	57	45	7	15	31	1.75
39190--39280	24	3.8	24	79	5	103	58	15	10	15	1.64
39197--39271	34	2.2	34	85	0	96	57	16	10	16	1.65
39245--39280	14	2.6	14	90	0	54	63	11	8	16	1.49
41071--41137	21	3.5	21	64	26	58	28	1	19	50	1.56
41064--41182	35	3.3	36	87	5	170	31	1	20	46	1.61
45674--45757	37	2.3	38	87	6	120	33	4	19	42	1.72
48098--48364	93	2.9	92	89	1	390	32	20	17	28	1.96
49529--49625	31	3.1	31	80	4	106	46	2	3	48	1.29
61929--61983	20	2.8	20	91	0	92	27	34	27	10	1.90
61946--61982	10	3.7	10	86	13	58	24	37	27	10	1.88
62054--62114	14	4.4	14	97	0	104	6	29	39	24	1.80
63091--63132	20	2.1	20	86	0	57	45	2	9	42	1.49
71734--72023	143	2.0	143	99	0	571	37	13	17	30	1.89
76861--76920	5	11.8	5	82	10	77	5	21	53	20	1.64
76883--76929	24	2.0	24	91	0	76	6	23	51	19	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76914--76951	19	2.0	19	94	0	67	26	26	28	18	1.98
76885--76936	24	2.2	24	82	0	59	11	23	46	19	1.82
76919--76958	19	2.1	19	90	0	62	27	30	22	20	1.98

Tables:   1

The End!