genome.fa.s2306.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002306.1 Hibiscus syriacus cultivar Beakdansim tig00004698_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82160

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5339--5378	21	2.0	21	85	5	55	30	20	20	30	1.97
16908--16986	24	3.3	24	85	0	113	25	15	22	36	1.93
26758--26864	40	2.7	39	78	5	108	32	19	11	36	1.87
27081--27141	32	1.9	32	87	12	90	16	8	32	42	1.78
29705--29737	16	2.1	16	94	0	57	30	6	15	48	1.69
29979--30085	39	2.7	39	81	8	137	34	15	1	47	1.57
30696--30738	23	2.0	21	86	13	61	34	0	0	65	0.93
32614--32682	3	22.3	3	75	21	63	34	1	0	63	1.03
32614--32682	22	3.2	21	87	6	93	34	1	0	63	1.03
38750--38922	90	1.9	88	90	2	274	38	11	5	44	1.65
42625--43715	255	4.2	256	82	6	1237	31	16	17	34	1.92
42625--43715	513	2.1	512	82	6	1325	31	16	17	34	1.92
44111--44189	36	2.2	36	97	0	149	43	20	15	21	1.88
45998--46024	14	1.9	14	100	0	54	37	3	0	59	1.15
46555--46595	14	2.8	15	81	7	57	31	2	19	46	1.63
49930--50035	46	2.3	47	90	1	160	22	23	10	43	1.84
51486--51642	55	2.8	55	86	1	197	34	13	21	31	1.92
51951--52099	67	2.2	68	89	3	230	32	13	24	29	1.93
52049--52347	81	3.7	81	88	0	409	38	14	21	26	1.91
57030--57170	55	2.7	52	82	10	162	32	13	19	34	1.90
57436--57759	68	4.8	68	86	4	415	32	14	23	29	1.94
57722--58108	81	4.8	81	87	1	490	40	12	21	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64923--65061	46	3.0	46	91	1	224	22	23	10	43	1.83
64983--65127	66	2.2	66	94	0	254	21	26	10	41	1.85
64935--65252	112	2.8	111	86	7	412	20	24	10	44	1.83
65048--65219	46	3.7	46	93	0	299	18	26	11	43	1.83
64923--65252	158	2.1	159	92	0	545	20	24	10	44	1.83

Tables:   1

The End!