genome.fa.s2307.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002307.1 Hibiscus syriacus cultivar Beakdansim tig00004700_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66692

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379--454	32	2.4	32	84	2	91	27	15	22	34	1.95
11707--11877	46	3.8	45	91	3	256	38	7	21	32	1.82
12277--12342	33	2.0	33	93	0	114	24	24	21	30	1.99
15660--15782	41	3.0	41	96	0	219	40	14	15	29	1.87
17242--17309	21	3.2	21	87	0	100	22	23	17	36	1.94
17305--17353	20	2.5	20	86	0	71	38	26	14	20	1.91
17345--17551	20	10.4	20	89	4	301	45	25	12	17	1.83
17300--17591	60	4.9	60	83	5	270	43	23	12	20	1.86
17555--17592	19	2.0	19	100	0	76	36	15	10	36	1.82
18556--18609	24	2.2	24	93	0	90	20	18	20	40	1.91
20869--20904	18	2.0	18	94	0	63	55	25	2	16	1.55
21286--21349	20	3.1	21	77	8	69	21	20	14	43	1.87
21400--21571	66	2.6	65	88	9	249	52	16	2	28	1.56
22919--23017	21	4.7	21	71	8	76	23	19	33	24	1.97
22911--23020	42	2.6	42	80	9	125	23	17	35	23	1.95
25565--25622	22	2.6	22	88	0	89	17	13	44	24	1.85
25731--25877	20	7.3	20	81	9	156	18	13	24	43	1.86
25727--25877	60	2.5	60	84	5	198	17	14	24	43	1.87
25727--25905	60	3.0	61	78	8	161	19	14	24	41	1.88
25892--25945	20	2.7	20	97	0	99	29	5	33	31	1.80
25885--25959	20	3.7	19	84	8	78	26	10	32	30	1.90
29248--29318	26	2.8	25	77	10	72	29	1	28	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29268--29319	26	2.0	26	88	7	79	30	0	28	40	1.57
32199--32305	43	2.5	43	98	0	205	45	12	11	30	1.76
32288--32343	18	3.0	19	89	10	89	62	14	7	16	1.52
34239--34286	22	2.2	22	96	0	87	41	20	8	29	1.81
43922--44000	23	3.7	22	85	8	92	24	31	26	17	1.97
43922--43983	23	2.7	23	92	2	99	22	32	25	19	1.97
43965--44007	19	2.3	19	83	0	50	23	27	32	16	1.96
52511--52557	23	2.0	23	100	0	94	38	12	4	44	1.62
61805--61842	13	3.1	13	77	14	53	44	15	15	23	1.85
64136--64175	21	1.9	21	94	0	71	30	15	7	47	1.72
64170--64268	33	3.0	33	94	1	164	32	7	15	45	1.73
64254--64308	13	4.2	13	75	13	58	34	3	12	49	1.59
64692--64738	15	3.0	15	79	11	58	29	12	12	44	1.80
64702--64735	18	1.9	18	94	5	61	38	11	11	38	1.79
64829--64860	16	2.0	17	88	11	50	43	21	21	12	1.86

Tables:   1

The End!