Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002308.1 Hibiscus syriacus cultivar Beakdansim tig00004701_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60713

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3730--3772
19
2.3
19
88
8
61
69
4
9
16
1.31
4250--4287
18
2.1
18
90
0
58
63
0
7
28
1.23
12893--12945
27
2.0
26
88
3
79
30
28
16
24
1.97
15709--15734
2
13.0
2
100
0
52
50
0
0
50
1.00
16010--16390
157
2.4
156
82
3
469
46
7
18
27
1.76
20857--20947
46
2.0
46
97
0
173
27
24
18
29
1.98
21814--21849
18
2.0
18
100
0
72
44
11
11
33
1.75
22400--22433
3
11.3
3
100
0
68
32
0
0
67
0.91
25710--26039
131
2.5
131
82
1
376
33
12
15
38
1.85
27998--28068
29
2.5
27
82
8
88
22
7
7
63
1.44
28684--29014
131
2.5
131
82
4
409
34
11
16
37
1.85
35220--35264
19
2.4
19
100
0
90
44
28
13
13
1.81
35931--35999
30
2.3
30
100
0
138
36
8
7
47
1.62
37192--37648
136
3.4
136
86
1
603
34
17
19
28
1.95
39309--39426
54
2.2
54
81
0
128
28
17
16
37
1.92
44423--44595
90
1.9
89
94
1
301
39
10
5
43
1.63
47573--47690
54
2.2
54
84
0
146
28
18
16
35
1.93
48325--48612
136
2.1
135
82
1
335
36
17
19
27
1.94
50578--50607
10
3.0
10
95
0
51
56
0
0
43
0.99
51918--52099
48
4.1
45
84
9
221
34
9
15
39
1.81
51916--52113
45
4.4
45
81
7
240
32
9
17
40
1.82
52273--52463
58
3.3
58
87
0
292
34
8
14
42
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52415--52507
48
1.9
48
89
4
143
29
8
12
49
1.71
52368--52560
106
1.8
106
84
2
262
34
8
13
44
1.74
52566--52715
55
2.7
55
86
2
194
31
6
14
48
1.68
52771--52884
39
2.9
39
84
0
147
41
8
11
38
1.72
52674--52924
136
1.8
136
87
0
376
40
7
12
39
1.72
52810--53077
98
2.7
97
86
4
369
41
6
13
38
1.71
52674--53099
234
1.8
233
88
2
649
40
6
13
39
1.70
53008--53307
39
7.4
39
74
15
211
41
8
11
39
1.71
53005--53307
78
3.8
78
75
16
269
40
7
11
39
1.71
55119--55370
108
2.3
108
83
6
303
44
18
17
19
1.87
56337--56403
6
11.0
6
74
17
50
74
0
2
22
0.95
56339--56409
9
8.1
9
73
16
60
71
0
2
25
0.99
56337--56385
5
9.4
5
80
14
55
77
0
2
20
0.87
56337--56385
11
4.6
11
82
5
57
77
0
2
20
0.87
56630--56952
133
2.4
133
86
4
429
29
17
21
32
1.96
59384--59419
18
1.9
19
94
5
65
27
33
27
11
1.91

Tables:   1

The End!