Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002309.1 Hibiscus syriacus cultivar Beakdansim tig00004702_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77324

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4698--4766
31
2.2
31
84
5
86
17
23
27
31
1.97
22030--22068
16
2.4
17
86
8
62
53
0
0
46
1.00
23797--23859
31
2.0
31
84
6
83
41
6
4
47
1.50
24280--24332
3
18.0
3
84
11
74
33
0
0
66
0.92
24280--24339
14
4.2
15
85
12
65
35
1
0
63
1.05
24280--24339
30
2.0
30
83
6
77
35
1
0
63
1.05
24405--24453
25
2.0
25
100
0
98
36
22
16
24
1.94
30014--30051
20
1.9
20
88
0
58
71
10
15
2
1.25
30034--30081
12
3.9
12
83
10
53
70
12
12
4
1.29
30039--30076
11
3.4
11
89
7
58
71
10
13
5
1.30
31736--31805
36
2.0
34
83
5
86
32
15
10
41
1.81
31596--31996
196
2.0
197
89
5
607
31
15
11
40
1.84
31931--32050
35
3.3
36
80
12
129
35
15
11
37
1.84
31931--32067
71
1.9
73
80
7
163
33
18
13
34
1.90
32153--32234
36
2.3
36
77
8
87
36
18
13
31
1.89
32747--33094
29
11.8
28
72
17
210
27
11
14
47
1.78
33005--33126
37
3.5
36
73
15
130
31
12
10
45
1.76
32989--33144
67
2.3
67
94
0
267
30
12
10
46
1.76
33490--33557
28
2.4
28
90
4
102
33
8
13
44
1.74
33565--33644
40
2.0
40
95
0
142
31
21
11
36
1.88
34020--34094
35
2.1
36
85
7
100
36
18
10
34
1.86
34362--34415
28
1.9
28
85
7
74
22
16
16
44
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34518--34769
43
5.8
43
71
10
172
26
30
19
23
1.98
34427--34769
129
2.7
129
94
1
607
25
30
20
24
1.99
34479--34679
40
4.8
40
73
13
163
24
32
18
23
1.97
34465--34811
43
8.0
44
71
12
163
25
30
19
24
1.98
34968--35020
3
18.0
3
84
11
74
33
0
0
66
0.92
34968--35027
14
4.2
15
85
12
65
35
1
0
63
1.05
34968--35027
30
2.0
30
83
6
77
35
1
0
63
1.05
35093--35141
25
2.0
25
100
0
98
36
22
16
24
1.94
40261--40330
11
6.5
11
70
18
58
48
1
2
47
1.25
40850--40925
30
2.5
30
82
4
91
17
15
15
51
1.77
45327--45367
20
2.0
20
100
0
82
26
4
29
39
1.77
58428--58473
21
2.2
21
88
0
65
10
28
32
28
1.91
64552--64614
5
12.6
5
100
0
126
38
0
0
61
0.96
67113--67161
22
2.2
22
88
0
71
34
0
26
38
1.57
67121--67166
22
2.1
22
100
0
92
32
0
23
43
1.54
69330--69390
31
2.0
30
84
9
79
37
3
22
36
1.71
69613--69681
23
3.0
23
76
0
75
18
26
24
30
1.98
73492--73547
24
2.3
24
100
0
112
28
17
16
37
1.91
74028--74111
30
2.8
30
75
8
80
27
20
27
25
1.99

Tables:   1

The End!