Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000231.1 Hibiscus syriacus cultivar Beakdansim tig00000401_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46158

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
436--521
34
2.4
36
86
11
124
29
13
9
47
1.74
21120--21167
25
1.9
25
91
0
78
20
18
12
47
1.81
23589--24035
228
2.0
226
94
1
788
44
8
7
39
1.62
24101--24146
20
2.3
19
89
10
74
54
10
17
17
1.70
24266--24311
20
2.3
19
89
10
74
54
10
17
17
1.70
25194--25232
20
2.0
20
89
0
60
25
15
10
48
1.76
25547--25610
23
2.8
23
87
0
92
35
6
20
37
1.78
25547--25619
23
3.2
23
82
7
85
34
5
20
39
1.76
25887--25937
25
2.0
25
92
0
84
33
7
19
39
1.81
26231--26265
18
1.9
18
88
0
52
31
5
11
51
1.61
26528--26606
38
2.1
38
95
0
140
48
20
15
16
1.82
27007--27070
23
2.8
23
87
0
92
35
6
20
37
1.78
27007--27079
23
3.2
23
82
7
85
34
5
20
39
1.76
28237--28298
32
1.9
32
86
0
88
35
14
19
30
1.92
32400--32433
17
2.0
17
88
0
50
41
17
11
29
1.85
35670--35736
34
2.0
33
88
2
98
37
14
10
37
1.81
38529--38606
38
2.1
37
95
2
138
38
10
15
35
1.81
39172--39229
24
2.4
24
85
0
89
32
31
8
27
1.87
39927--40221
147
2.0
147
99
0
581
23
23
22
30
1.99
42502--42537
12
3.0
13
84
15
51
19
0
5
75
1.00
42499--42537
16
2.5
15
88
8
60
20
0
5
74
1.01
44516--44566
26
2.0
26
88
0
75
43
3
9
43
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44583--44632
19
2.6
19
93
0
82
48
2
2
48
1.24
45543--45701
20
8.0
20
75
12
148
42
23
13
20
1.88
45522--45701
40
4.5
40
83
9
226
41
23
14
20
1.89

Tables:   1

The End!