Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002310.1 Hibiscus syriacus cultivar Beakdansim tig00004706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88000

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2186--2210
2
12.5
2
100
0
50
48
0
0
52
1.00
2482--2529
21
2.3
21
100
0
96
31
33
0
35
1.58
3743--3794
27
1.9
27
88
0
77
44
17
17
21
1.87
7129--7169
19
2.2
19
90
0
64
19
29
17
34
1.94
7751--7804
27
2.0
28
92
3
92
46
16
12
24
1.82
14751--14809
27
2.2
26
85
8
75
35
11
10
42
1.76
14761--14816
27
2.1
27
89
0
85
39
12
7
41
1.70
17172--17227
20
2.7
20
83
10
60
75
0
1
23
0.90
17231--17645
35
11.6
37
71
17
175
46
8
2
41
1.48
17232--17645
38
11.6
37
71
17
155
47
8
2
41
1.48
17311--17362
25
2.2
24
86
6
70
50
11
0
38
1.39
17334--17582
37
6.8
38
80
9
234
50
10
1
38
1.46
17330--17645
38
8.6
37
76
14
225
47
9
2
39
1.50
18238--18708
85
5.5
85
88
1
665
26
18
20
35
1.95
31028--31180
20
7.7
20
87
2
209
43
22
17
16
1.88
31300--31350
22
2.3
22
90
6
77
23
45
11
19
1.83
31695--31755
20
3.3
20
68
25
62
49
26
14
9
1.75
31710--31743
14
2.4
14
85
0
50
50
26
14
8
1.72
35145--35320
66
2.6
65
89
8
257
27
2
17
52
1.56
35373--35439
20
3.4
20
89
6
102
41
23
17
16
1.89
35776--35811
18
2.0
18
94
0
63
16
2
25
55
1.55
37850--37920
27
2.7
27
91
2
108
7
21
9
61
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38105--38150
24
1.9
24
90
0
74
39
21
13
26
1.90
39086--39317
20
11.6
20
70
11
111
23
15
24
37
1.93
39087--39158
19
3.7
20
83
7
85
26
12
23
37
1.90
39086--39248
80
2.1
79
82
5
195
22
15
22
39
1.91
39137--39273
60
2.3
60
88
1
193
23
18
21
37
1.94
39575--39637
23
2.7
23
95
4
110
42
12
3
41
1.59
40764--40829
32
2.1
32
83
10
84
54
6
10
28
1.58
40850--40890
9
4.6
9
90
0
64
73
0
0
26
0.84
40872--40929
31
1.9
30
83
13
75
65
1
10
22
1.32
41227--41264
18
2.1
18
90
0
58
0
28
2
68
1.03
42417--43140
90
8.0
90
95
0
1225
25
26
18
28
1.98
44809--44858
16
3.1
16
75
16
50
46
2
2
50
1.24
44809--44856
21
2.2
22
85
3
62
45
2
2
50
1.25
44875--44919
2
22.5
2
100
0
90
51
48
0
0
1.00
44919--45044
2
64.0
2
83
9
125
50
1
1
46
1.20
46719--46779
19
3.0
21
81
11
83
40
8
18
32
1.80
47303--47366
22
2.9
22
72
9
58
53
15
6
25
1.65
79107--79157
24
2.1
24
100
0
102
39
29
3
27
1.74
85907--85957
24
2.1
24
100
0
102
39
29
3
27
1.74
86898--86922
12
2.1
12
100
0
50
32
8
8
52
1.60

Tables:   1

The End!