Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002311.1 Hibiscus syriacus cultivar Beakdansim tig00004710_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73346
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:6859 original size:16 final size:18
Alignment explanation
Indices: 6830--6866 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
6820 TATAATGTTT
*
6830 TAAATAATATAAATAT-A
1 TAAATAATAAAAATATCA
6847 TAAA-AATAAAAATATCA
1 TAAATAATAAAAATATCA
6864 TAA
1 TAA
6867 TAAGAATACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAATAATAAAAATATCA
Found at i:12838 original size:111 final size:111
Alignment explanation
Indices: 12640--12860 Score: 309
Period size: 111 Copynumber: 2.0 Consensus size: 111
12630 GGGTGTATGA
* * * * *
12640 GAGTTGAAGCAGCAAATGAACACTGGCATGATTCTGGGGAAGCATCTGCAGCTGGAGTAGAAGTT
1 GAGTTGAAGCAGCAAATGAACACTGGCATGATTCTAGGGAAACATCCGCAACTGGACTAGAAGTT
* * *
12705 GAAATACCAGAACAAACAGGATCTTGGTGAATGTCTGTTGCAGTGG
66 GAAACACCAGAACAAACAGGATCTTCGTGAATGACTGTTGCAGTGG
* * *
12751 GAGTTGGAGCGGCAAATGAAC-CATGGCATGATTCTAGGGAAACATCCGTAACTGGACTAGAAGT
1 GAGTTGAAGCAGCAAATGAACAC-TGGCATGATTCTAGGGAAACATCCGCAACTGGACTAGAAGT
* *
12815 TGAAACACCAGAACAAACTGGATCTTCGTGAATGAGTGTTGCAGTG
65 TGAAACACCAGAACAAACAGGATCTTCGTGAATGACTGTTGCAGTG
12861 CGCCTTTCAC
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
110 1 0.01
111 95 0.99
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.22
Consensus pattern (111 bp):
GAGTTGAAGCAGCAAATGAACACTGGCATGATTCTAGGGAAACATCCGCAACTGGACTAGAAGTT
GAAACACCAGAACAAACAGGATCTTCGTGAATGACTGTTGCAGTGG
Found at i:21892 original size:15 final size:15
Alignment explanation
Indices: 21848--21893 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
21838 TTACCCGTCT
*
21848 CGCATCCGCCCACCC
1 CGCATCCGCCCGCCC
21863 CGCATCCGCCCGCCC
1 CGCATCCGCCCGCCC
*
21878 CGCATCCGCCTGCCC
1 CGCATCCGCCCGCCC
21893 C
1 C
21894 AACATCCACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.09, C:0.65, G:0.17, T:0.09
Consensus pattern (15 bp):
CGCATCCGCCCGCCC
Found at i:27556 original size:74 final size:73
Alignment explanation
Indices: 27423--27701 Score: 360
Period size: 74 Copynumber: 3.8 Consensus size: 73
27413 GACAACTAAG
*
27423 TTTAAGAACTTTCAGCTCAAACCAAGCAATACCCAGGAAACAAGAACACTTCAAAAACTTCGAAG
1 TTTAAGCACTTTCAGCTCAAACCAAGCAATACCCA-GAAACAAGAACACTTCAAAAACTTCGAAG
27488 AAATGAAGAA
65 AAAT-AAGAA
* * * * * *
27498 TTTGAGCACTTTCCGCTCAAACCAAACAATACTCAGAAACAAGGACACTTCAAAAACTTCAAAGA
1 TTTAAGCACTTTCAGCTCAAACCAAGCAATACCCAGAAACAAGAACACTTCAAAAACTTCGAAGA
27563 AACTAAGAA
66 AA-TAAGAA
* *
27572 TTTAAGCACTTTCAGATCAAACCAAGCAATACCCAGAAACAAGAAAACTTCAAAAACTTCGAAGA
1 TTTAAGCACTTTCAGCTCAAACCAAGCAATACCCAGAAACAAGAACACTTCAAAAACTTCGAAGA
27637 AATTAAGAA
66 AA-TAAGAA
* * * * * * * *
27646 TTTCAGCACTTTCAACCCGAACAAAGCAATACCCAGATTAGAAGAACACTCCAAAA
1 TTTAAGCACTTTCAGCTCAAACCAAGCAATACCCAGA-AACAAGAACACTTCAAAA
27702 TATGAACAAC
Statistics
Matches: 176, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
74 131 0.74
75 45 0.26
ACGTcount: A:0.47, C:0.23, G:0.11, T:0.18
Consensus pattern (73 bp):
TTTAAGCACTTTCAGCTCAAACCAAGCAATACCCAGAAACAAGAACACTTCAAAAACTTCGAAGA
AATAAGAA
Found at i:27676 original size:148 final size:147
Alignment explanation
Indices: 27416--27682 Score: 403
Period size: 148 Copynumber: 1.8 Consensus size: 147
27406 CAAATTGGAC
* *
27416 AACTAAGTTTAAGAACTTTCAGCTCAAACCAAGCAATACCCAGGAAACAAGAACACTTCAAAAAC
1 AACTAAGTTTAAGAACTTTCAGATCAAACCAAGCAATACCCAGGAAACAAGAAAACTTCAAAAAC
* ** * *
27481 TTCGAAGAAATGAAGAATTTGAGCACTTTCCGCTCAAACCAAACAATACTCAGAAACAAGGACAC
66 TTCGAAGAAATGAAGAATTTCAGCACTTTCAACCCAAACCAAACAATACCCAGAAACAAGGACAC
27546 TTCAAAAACTTCAAAGA
131 TTCAAAAACTTCAAAGA
*
27563 AACTAAGAATTTAAGCACTTTCAGATCAAACCAAGCAATACCCA-GAAACAAGAAAACTTCAAAA
1 AACTAAG--TTTAAGAACTTTCAGATCAAACCAAGCAATACCCAGGAAACAAGAAAACTTCAAAA
* *
27627 ACTTCGAAGAAATTAAGAATTTCAGCACTTTCAACCCGAA-CAAAGCAATACCCAGA
64 ACTTCGAAGAAATGAAGAATTTCAGCACTTTCAACCCAAACCAAA-CAATACCCAGA
27683 TTAGAAGAAC
Statistics
Matches: 107, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
147 11 0.10
148 63 0.59
149 33 0.31
ACGTcount: A:0.47, C:0.23, G:0.12, T:0.18
Consensus pattern (147 bp):
AACTAAGTTTAAGAACTTTCAGATCAAACCAAGCAATACCCAGGAAACAAGAAAACTTCAAAAAC
TTCGAAGAAATGAAGAATTTCAGCACTTTCAACCCAAACCAAACAATACCCAGAAACAAGGACAC
TTCAAAAACTTCAAAGA
Found at i:31199 original size:2 final size:2
Alignment explanation
Indices: 31192--31236 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
31182 ACGTCAAGAT
31192 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
31234 TA T
1 TA T
31237 GGAGGAGAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:31415 original size:73 final size:72
Alignment explanation
Indices: 31297--31437 Score: 237
Period size: 73 Copynumber: 1.9 Consensus size: 72
31287 AAAACCCCAT
*
31297 AACTTTTGATTCCAGACCCTTAACATAGCATTCTCAATTTCCTCCAATTAATTTGTTTTTTTTTC
1 AACTTTTGATTCCAGACCCTTAACATAGCATTCTCAATTTCCTCCAACTAATTTGTTTTTTTTTC
31362 TTTCAGA
66 TTTCAGA
* * *
31369 AACTTTTGATTACCGGACCCTTAACGTATCATTCTCAATTTCCTCCAACTAATTTGTTTTTTTTT
1 AACTTTTGATT-CCAGACCCTTAACATAGCATTCTCAATTTCCTCCAACTAATTTGTTTTTTTTT
31434 CTTT
65 CTTT
31438 GATAAATGTG
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
72 11 0.17
73 53 0.83
ACGTcount: A:0.23, C:0.23, G:0.07, T:0.47
Consensus pattern (72 bp):
AACTTTTGATTCCAGACCCTTAACATAGCATTCTCAATTTCCTCCAACTAATTTGTTTTTTTTTC
TTTCAGA
Found at i:35819 original size:16 final size:17
Alignment explanation
Indices: 35789--35821 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
35779 AATCAATATT
*
35789 TTTTTTTATTTAAAATA
1 TTTTTTTATTGAAAATA
35806 TTTTTTTA-TGAAAATA
1 TTTTTTTATTGAAAATA
35822 GAATATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TTTTTTTATTGAAAATA
Found at i:36138 original size:25 final size:25
Alignment explanation
Indices: 36110--36183 Score: 130
Period size: 25 Copynumber: 3.0 Consensus size: 25
36100 GTTTTGAGGG
36110 TTATTTTTATTTCTGAAGTATATTT
1 TTATTTTTATTTCTGAAGTATATTT
36135 TTATTTTTATTTCTGAAGTATATTT
1 TTATTTTTATTTCTGAAGTATATTT
* *
36160 TTATTTTTATTTCTGTACTATATT
1 TTATTTTTATTTCTGAAGTATATT
36184 CAGTTTATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (25 bp):
TTATTTTTATTTCTGAAGTATATTT
Found at i:37846 original size:15 final size:15
Alignment explanation
Indices: 37826--37867 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
37816 ATGGTGGGCC
37826 AGGTGGGCCAATTGA
1 AGGTGGGCCAATTGA
* *
37841 AGGTGGGCTAGTTGA
1 AGGTGGGCCAATTGA
*
37856 AGATGGG-CAATT
1 AGGTGGGCCAATT
37868 TGATGGTGGT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.26, C:0.10, G:0.40, T:0.24
Consensus pattern (15 bp):
AGGTGGGCCAATTGA
Found at i:40299 original size:21 final size:21
Alignment explanation
Indices: 40273--40312 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
40263 ATTTTTAGGT
*
40273 TCCATCTTCATCTCAGACTGC
1 TCCATCTTCATCCCAGACTGC
40294 TCCATCTTCATCCCAGACT
1 TCCATCTTCATCCCAGACT
40313 ACTACATGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.40, G:0.07, T:0.33
Consensus pattern (21 bp):
TCCATCTTCATCCCAGACTGC
Found at i:40411 original size:21 final size:21
Alignment explanation
Indices: 40387--40436 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
40377 CAACATATTT
* *
40387 ATCTCATCCTACAATAACTTC
1 ATCTCAGCCTACAACAACTTC
* *
40408 ATCTCAGCTTACAACACCTTC
1 ATCTCAGCCTACAACAACTTC
40429 ATCTCAGC
1 ATCTCAGC
40437 TTGTAAGAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.36, G:0.04, T:0.30
Consensus pattern (21 bp):
ATCTCAGCCTACAACAACTTC
Found at i:40983 original size:33 final size:33
Alignment explanation
Indices: 40921--40983 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
40911 TCAATGAAAG
* *
40921 TCATAACCAACACTAACAACACTTCAATGGCAT
1 TCATAACCAACACTAACAACACATAAATGGCAT
* * *
40954 TCATAGCCAACAGTAGCAACACATAAATGG
1 TCATAACCAACACTAACAACACATAAATGG
40984 AAATCATATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.43, C:0.27, G:0.11, T:0.19
Consensus pattern (33 bp):
TCATAACCAACACTAACAACACATAAATGGCAT
Found at i:40991 original size:33 final size:33
Alignment explanation
Indices: 40916--40991 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 33
40906 CTCTCTCAAT
* *
40916 GAAAGTCATAACCAACACTAACAACACTTCAATG
1 GAAA-TCATAACCAACACTAACAACACATAAATG
* * * * *
40950 GCATTCATAGCCAACAGTAGCAACACATAAATG
1 GAAATCATAACCAACACTAACAACACATAAATG
40983 GAAATCATA
1 GAAATCATA
40992 TAAAATAACA
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.46, C:0.24, G:0.12, T:0.18
Consensus pattern (33 bp):
GAAATCATAACCAACACTAACAACACATAAATG
Found at i:44087 original size:2 final size:2
Alignment explanation
Indices: 44080--44106 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
44070 ACCACCAACC
44080 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
44107 ATTAATCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:47072 original size:2 final size:2
Alignment explanation
Indices: 47065--47104 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
47055 TATAATACAA
47065 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47105 TTGGGTAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51330 original size:29 final size:30
Alignment explanation
Indices: 51297--51372 Score: 118
Period size: 29 Copynumber: 2.6 Consensus size: 30
51287 ACTAAACCCA
51297 TCCCCGTCCCCGTTTAACATAAAC-GATTT
1 TCCCCGTCCCCGTTTAACATAAACGGATTT
* *
51326 TCCCCGTCCCCGTTTAGCATAAACGGTTTT
1 TCCCCGTCCCCGTTTAACATAAACGGATTT
*
51356 TCCCCATCCCCGTTTAA
1 TCCCCGTCCCCGTTTAA
51373 TTCGATTTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 23 0.55
30 19 0.45
ACGTcount: A:0.20, C:0.37, G:0.12, T:0.32
Consensus pattern (30 bp):
TCCCCGTCCCCGTTTAACATAAACGGATTT
Found at i:58268 original size:23 final size:23
Alignment explanation
Indices: 58242--58291 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
58232 ATAAGCATAC
58242 AGTAAAAATTAAAATATGAATAA
1 AGTAAAAATTAAAATATGAATAA
58265 AGTAAAAATTAAAATATGAATAA
1 AGTAAAAATTAAAATATGAATAA
58288 AGTA
1 AGTA
58292 GGGTTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (23 bp):
AGTAAAAATTAAAATATGAATAA
Found at i:60815 original size:22 final size:22
Alignment explanation
Indices: 60787--60855 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 22
60777 TCAGGTCGGG
60787 TCTCGGGTGGAGGATTCCTTGA
1 TCTCGGGTGGAGGATTCCTTGA
* * *
60809 TCTCGGGT-CAGG--T-C-GGG
1 TCTCGGGTGGAGGATTCCTTGA
*
60826 TCTCGGGTGGAGGATTCTTTGA
1 TCTCGGGTGGAGGATTCCTTGA
60848 TCTCGGGT
1 TCTCGGGT
60856 CGGGTCGGGC
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
17 9 0.26
18 4 0.11
19 1 0.03
20 1 0.03
21 3 0.09
22 17 0.49
ACGTcount: A:0.10, C:0.19, G:0.39, T:0.32
Consensus pattern (22 bp):
TCTCGGGTGGAGGATTCCTTGA
Found at i:60820 original size:39 final size:39
Alignment explanation
Indices: 60775--60864 Score: 162
Period size: 39 Copynumber: 2.3 Consensus size: 39
60765 ATCTTGTTTT
60775 GGTCAGGTCGGGTCTCGGGTGGAGGATTCCTTGATCTCG
1 GGTCAGGTCGGGTCTCGGGTGGAGGATTCCTTGATCTCG
*
60814 GGTCAGGTCGGGTCTCGGGTGGAGGATTCTTTGATCTCG
1 GGTCAGGTCGGGTCTCGGGTGGAGGATTCCTTGATCTCG
*
60853 GGTCGGGTCGGG
1 GGTCAGGTCGGG
60865 CCAACCCGAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.09, C:0.19, G:0.44, T:0.28
Consensus pattern (39 bp):
GGTCAGGTCGGGTCTCGGGTGGAGGATTCCTTGATCTCG
Found at i:70010 original size:154 final size:154
Alignment explanation
Indices: 69778--70081 Score: 497
Period size: 154 Copynumber: 2.0 Consensus size: 154
69768 GTCGGTCGCA
* *
69778 CCCTTAAAATTTTTAAATTATCACATATTTTAGATATTTTCTTTATATTTTTATTGATAGTCTAT
1 CCCTTAAAATTTTCAAATTATCACATATTTTAGATATTTTCTTTATATTTTTATTGATAATCTAT
* * * *
69843 TTTCACCCTTAGAATTTTATAAATTTGCCTTCTTTTAAAATTTTAAAAATTCGCTTTCTTCCACG
66 TTTCACCCTTAGAATTTTATAAATTTACCTTCTTCTAAAATTTTAAAAATTCGCTCTCTTCCACA
69908 CATGTCC-CTGTTAATATCTATGTG
131 CATGTCCAC-GTTAATATCTATGTG
69932 CCCTTAAAATTTTCAAATTATCACATATTTTAGATA-TTTCTTTATATTTTTTTATTGATAATCT
1 CCCTTAAAATTTTCAAATTATCACATATTTTAGATATTTTCTTTATA--TTTTTATTGATAATCT
*
69996 ATTTTCACCC-TAGAATTTTATAAATTTACCTTCTTCTAAAATTTTAAAAGTTCGCTCTCTTCCA
64 ATTTTCACCCTTAGAATTTTATAAATTTACCTTCTTCTAAAATTTTAAAAATTCGCTCTCTTCCA
70060 CACATGTCCACGTTAATATCTA
129 CACATGTCCACGTTAATATCTA
70082 CATTTCATTA
Statistics
Matches: 140, Mismatches: 7, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
153 10 0.07
154 104 0.74
155 26 0.19
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.47
Consensus pattern (154 bp):
CCCTTAAAATTTTCAAATTATCACATATTTTAGATATTTTCTTTATATTTTTATTGATAATCTAT
TTTCACCCTTAGAATTTTATAAATTTACCTTCTTCTAAAATTTTAAAAATTCGCTCTCTTCCACA
CATGTCCACGTTAATATCTATGTG
Found at i:71070 original size:53 final size:53
Alignment explanation
Indices: 71007--71116 Score: 202
Period size: 53 Copynumber: 2.1 Consensus size: 53
70997 TATAGAAAAA
* *
71007 TAGGATATTTAATGGAGAAGAAAGGAAAGTTTTTTCTTTATCCGATTTAAGGT
1 TAGGATATTTAATGGAGAAGAAAGGAAAGCTTTTTCTTTATCCGAATTAAGGT
71060 TAGGATATTTAATGGAGAAGAAAGGAAAGCTTTTTCTTTATCCGAATTAAGGT
1 TAGGATATTTAATGGAGAAGAAAGGAAAGCTTTTTCTTTATCCGAATTAAGGT
71113 TAGG
1 TAGG
71117 TTATATGTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (53 bp):
TAGGATATTTAATGGAGAAGAAAGGAAAGCTTTTTCTTTATCCGAATTAAGGT
Found at i:72961 original size:19 final size:20
Alignment explanation
Indices: 72937--72976 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
72927 ATATGAATGT
*
72937 AATACAAGTGA-AAAGAAAA
1 AATACAAATGAGAAAGAAAA
72956 AATACAAATGATGAAAGAAAA
1 AATACAAATGA-GAAAGAAAA
72977 TATTAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.68, C:0.05, G:0.15, T:0.12
Consensus pattern (20 bp):
AATACAAATGAGAAAGAAAA
Done.