genome.fa.s2312.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002312.1 Hibiscus syriacus cultivar Beakdansim tig00004711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75583

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591--662	32	2.2	32	80	0	81	15	29	31	23	1.95
1833--1883	17	2.8	18	79	8	50	56	0	3	39	1.18
16365--16490	33	3.6	34	85	12	175	42	36	10	10	1.73
16367--16488	38	3.3	38	89	7	182	41	37	10	9	1.73
24120--24392	127	2.1	127	95	0	492	29	18	18	33	1.95
28444--28729	143	2.0	143	100	0	572	33	18	10	37	1.85
29381--29422	17	2.5	17	82	14	52	33	2	2	61	1.21
29684--29778	31	3.1	31	68	14	81	33	13	8	44	1.74
29690--29873	60	3.0	59	80	7	190	36	16	5	40	1.73
30163--30209	22	2.0	24	92	8	80	51	4	2	42	1.33
31006--31247	115	2.1	117	83	3	301	37	14	17	30	1.89
31006--31261	117	2.2	115	79	5	282	38	13	17	31	1.88
33452--33521	10	7.1	10	82	9	74	71	0	2	25	1.00
33452--33521	16	4.2	17	77	14	83	71	0	2	25	1.00
33458--33523	26	2.5	27	87	7	100	71	0	1	27	0.95
33592--33686	32	2.9	32	80	10	104	48	8	4	38	1.53
33592--33673	32	2.5	32	88	5	112	48	8	3	39	1.51
33657--33926	39	7.2	38	81	10	270	44	6	4	44	1.50
34865--34904	20	2.0	20	90	0	62	52	12	12	22	1.72
42540--42601	22	2.8	23	73	7	65	27	35	22	14	1.93
44561--44593	15	2.1	16	88	5	50	15	6	24	54	1.63
44751--44781	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45148--45241	47	2.0	47	95	0	170	45	12	4	37	1.62
45155--45232	23	3.3	23	68	10	68	44	11	5	38	1.63
46614--46669	24	2.3	24	84	0	76	51	12	5	30	1.61
46614--46650	18	2.1	18	89	0	56	51	10	5	32	1.60
49321--49369	7	7.0	7	97	0	89	44	0	40	14	1.45
49322--49380	21	2.8	21	89	0	64	49	0	33	16	1.47
50472--50523	23	2.3	23	100	0	104	36	7	17	38	1.78
50737--50850	34	3.5	34	72	13	121	43	10	11	34	1.75
51136--51204	23	2.9	24	77	12	79	26	2	4	66	1.24
51180--51314	41	3.3	40	80	14	138	28	2	1	67	1.11
51245--51375	29	4.4	30	73	17	98	19	5	0	74	1.06
51262--51340	23	3.3	23	70	17	63	21	2	1	74	1.01
51195--51317	39	3.1	41	80	15	143	30	2	0	66	1.10
51295--51370	21	3.8	20	75	13	59	15	5	1	77	1.01
51459--51488	15	2.0	15	93	0	51	23	16	0	60	1.36
55386--55735	183	1.9	183	96	0	646	27	21	21	30	1.98
57022--57109	37	2.4	37	84	1	106	28	20	11	39	1.87
57124--57209	37	2.4	36	82	5	104	29	20	11	38	1.88
56934--57338	102	4.0	102	91	2	645	31	19	12	37	1.89
57225--57310	36	2.4	36	86	3	111	25	18	13	41	1.88
57293--57351	30	2.0	30	86	6	84	40	16	10	32	1.82
56940--57338	202	2.0	204	92	2	669	31	19	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57365--57477	36	3.1	36	83	5	156	30	19	11	38	1.87
57518--57632	33	3.4	35	90	5	152	38	19	11	31	1.87
57518--57632	31	3.5	32	88	10	153	38	19	11	31	1.87
57587--57779	67	2.8	66	82	4	233	29	20	12	37	1.89
58377--58789	105	4.0	101	79	9	377	32	25	20	21	1.97
59333--59401	34	2.0	34	94	0	120	43	11	13	31	1.79
59725--59790	22	2.9	22	75	20	57	21	6	4	68	1.30
59740--59806	24	2.8	23	76	14	64	23	4	4	67	1.28
59858--59972	6	18.7	6	70	21	60	19	5	0	75	0.98
59845--59972	28	4.5	27	71	18	91	20	5	0	74	1.02
59782--59912	36	3.5	36	79	17	135	29	2	1	66	1.13
59860--59986	43	3.0	43	77	13	129	20	6	0	73	1.05
59860--59922	17	3.8	17	73	21	53	25	1	0	73	0.93
59885--59973	9	9.7	9	73	8	54	16	6	0	76	0.99
59860--59976	44	2.8	44	74	19	115	19	5	0	74	1.02
59886--60013	55	2.4	52	78	11	118	16	9	0	73	1.13
59988--60050	31	2.1	31	85	8	85	17	7	3	71	1.23
60065--60094	15	2.0	15	100	0	60	20	20	0	60	1.37
63057--63100	16	2.7	16	79	13	54	54	0	0	45	0.99
63728--63868	64	2.2	64	80	2	149	26	18	24	30	1.98
64532--64579	17	2.9	16	84	9	60	52	0	2	45	1.12
64605--64652	13	3.5	13	75	10	51	45	6	4	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64778--64951	20	8.7	20	81	6	165	40	22	16	20	1.90
64803--64951	60	2.5	60	86	0	190	40	23	16	19	1.90
65065--65115	22	2.3	22	93	0	84	21	41	15	21	1.90
65615--65751	13	10.2	13	68	18	61	48	2	3	44	1.35
65615--65751	30	4.5	30	74	17	106	48	2	3	44	1.35
65925--65969	20	2.2	20	96	0	81	35	24	20	20	1.96
65963--66015	20	2.7	20	93	0	88	43	26	16	13	1.85
66124--66171	22	2.2	22	92	0	78	20	43	16	18	1.88
66576--66602	14	1.9	14	100	0	54	7	22	22	48	1.75
66585--66628	20	2.2	20	83	0	52	13	18	18	50	1.79
68369--68418	21	2.4	21	80	6	57	16	10	34	40	1.81
68792--68859	21	3.2	21	74	0	64	20	36	23	19	1.95
70185--70357	65	2.6	64	88	9	242	28	1	16	53	1.53
70282--70361	34	2.2	37	78	14	87	25	0	18	56	1.42
70451--70510	20	3.0	20	87	0	93	41	20	18	20	1.90
70549--70594	13	3.5	13	80	16	58	13	13	26	47	1.78
73954--73987	16	2.1	16	88	0	50	64	5	5	23	1.38
74128--74174	18	2.6	18	82	3	58	31	14	23	29	1.95
74148--74258	19	5.7	19	82	4	116	32	9	20	36	1.86
74250--74312	20	3.2	20	74	0	72	22	15	20	41	1.90
74247--74380	40	3.3	40	76	14	107	24	17	18	39	1.92
74310--74368	20	3.0	20	97	0	109	27	20	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74370--74497	20	6.4	20	74	11	120	20	16	25	37	1.93
74290--74392	40	2.6	40	73	14	104	25	19	19	35	1.95
74370--74473	40	2.6	40	89	6	149	21	17	24	37	1.94
74267--74497	100	2.3	100	81	8	249	22	17	22	37	1.94
74732--74807	19	3.9	20	82	5	93	47	0	26	26	1.52
75000--75583	4	148.2	4	96	3	1096	25	0	24	50	1.50

Tables:   1

The End!