genome.fa.s2313.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002313.1 Hibiscus syriacus cultivar Beakdansim tig00004713_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66768

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7990--8047	26	2.3	26	78	3	64	51	10	1	36	1.46
9369--9426	30	1.9	30	82	6	73	37	15	12	34	1.85
11414--11533	59	2.0	59	85	6	163	31	25	15	27	1.95
17025--17090	27	2.4	27	92	0	105	57	7	3	31	1.42
18773--18815	19	2.1	21	87	8	63	53	6	0	39	1.28
22985--23035	25	2.0	26	82	14	63	70	0	17	11	1.16
25188--25235	24	2.0	24	100	0	96	54	25	0	20	1.45
30363--30613	21	11.9	21	75	2	189	37	23	14	24	1.93
30426--30611	83	2.2	83	87	2	275	38	23	14	24	1.92
33256--33499	37	7.0	35	72	17	168	45	2	6	45	1.42
33320--33435	58	2.0	59	81	5	137	47	2	5	44	1.39
33375--33517	38	3.8	37	75	12	130	46	2	6	44	1.43
33443--33545	46	2.2	46	85	3	134	46	2	5	44	1.42
33535--33585	26	2.0	27	88	7	79	43	3	9	43	1.56
39065--39220	43	3.4	43	70	17	136	34	25	18	21	1.96
39154--40248	106	10.3	105	89	2	1564	33	24	17	23	1.96
39045--40248	212	5.7	212	90	1	1758	33	24	17	23	1.96
40855--41104	36	6.9	37	75	14	200	45	2	6	46	1.40
41048--41140	48	2.0	46	85	4	123	47	2	5	45	1.37
46399--46453	2	27.0	2	96	3	101	49	0	1	49	1.11
53180--53237	24	2.4	24	94	0	98	46	22	0	31	1.52
55139--55212	23	3.2	22	77	22	64	44	17	4	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55357--55514	21	7.4	20	74	8	109	36	20	16	25	1.94
55357--55514	42	3.7	42	78	5	174	36	20	16	25	1.94

Tables:   1

The End!