Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002314.1 Hibiscus syriacus cultivar Beakdansim tig00004714_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58155

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3707--3756
15
3.4
14
81
10
55
2
12
6
80
0.98
3718--3769
23
2.3
22
87
12
79
0
9
9
80
0.90
3998--4070
30
2.4
30
84
4
94
16
31
35
16
1.91
10788--10893
42
2.5
42
81
3
106
33
19
16
30
1.95
11172--11252
42
2.0
41
85
2
108
32
19
20
27
1.97
10901--12521
233
7.0
233
85
2
2095
34
17
16
32
1.92
10902--12521
699
2.3
695
87
3
2332
34
17
16
32
1.92
16083--16121
17
2.3
17
86
8
53
25
10
0
64
1.25
17792--17844
20
2.5
21
81
9
63
15
13
16
54
1.71
21702--22019
54
5.9
54
86
2
415
36
18
18
27
1.94
21702--22063
108
3.3
106
82
5
386
35
17
18
28
1.94
21708--22063
162
2.2
162
83
2
419
35
17
18
28
1.94
33052--33122
31
2.3
31
87
4
99
22
9
15
52
1.72
37074--37128
24
2.3
24
80
0
65
38
18
23
20
1.93
39975--40048
29
2.5
31
76
12
82
27
16
10
45
1.80
42404--42455
23
2.3
23
96
0
95
17
36
5
40
1.73
43364--43423
25
2.5
24
80
2
66
45
16
20
18
1.86
43417--43464
24
2.0
24
91
0
78
45
20
12
20
1.83
57967--58013
20
2.5
20
93
6
80
27
19
19
34
1.96

Tables:   1

The End!