genome.fa.s2315.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002315.1 Hibiscus syriacus cultivar Beakdansim tig00004715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78005

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3180--3213	14	2.4	14	90	0	50	47	20	0	32	1.51
5073--5126	20	2.7	20	88	0	81	37	24	24	14	1.93
5195--5291	19	5.6	19	69	22	79	9	19	22	48	1.77
5200--5289	33	2.7	33	92	0	153	7	18	23	50	1.73
5276--5330	20	2.8	19	83	8	65	16	23	23	36	1.94
5865--5913	18	2.7	18	87	0	80	14	16	44	24	1.84
7232--7289	20	2.9	20	84	0	62	43	20	17	18	1.89
7796--7868	20	3.7	20	90	0	110	24	19	27	28	1.98
7796--7902	20	5.3	20	80	6	99	23	18	25	32	1.97
8567--8623	20	3.0	20	76	5	55	19	21	8	50	1.74
8890--8973	42	2.0	42	83	4	107	47	13	20	19	1.82
13217--13292	31	2.4	31	82	4	98	28	14	21	35	1.92
15080--15595	137	3.8	137	85	5	684	35	24	15	25	1.94
15507--15644	54	2.6	54	92	0	222	35	21	17	26	1.95
15369--15781	191	2.2	191	88	2	616	34	24	15	25	1.95
15234--15918	328	2.1	327	85	4	927	34	25	16	24	1.95
15555--15926	137	2.7	137	88	1	523	34	25	16	23	1.95
17111--17324	118	1.8	119	80	9	258	37	6	7	49	1.56
24742--24879	60	2.3	61	83	5	174	35	23	4	36	1.75
24999--25086	29	3.0	29	67	18	81	37	4	25	32	1.76
24996--25150	60	2.6	58	82	6	177	40	3	21	33	1.72
34476--34530	3	18.0	3	85	10	76	30	0	3	65	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36289--36331	19	2.3	19	83	0	50	25	4	9	60	1.47
41082--41142	30	2.0	31	83	3	79	65	14	14	4	1.43
41113--41154	12	3.6	11	87	9	57	69	11	14	4	1.34
42330--42391	4	16.0	4	83	12	85	50	24	0	25	1.50
42738--42846	38	2.9	36	82	6	119	33	19	12	34	1.90
42771--42906	38	3.8	38	67	21	123	33	19	11	36	1.87
42798--42929	66	2.0	66	98	0	255	34	18	9	37	1.84
42932--43170	105	2.3	102	83	7	288	31	20	11	37	1.88
43116--43234	36	3.4	36	81	4	118	31	21	12	35	1.90
43485--43549	29	2.3	28	84	5	87	32	7	15	44	1.75
43485--43558	28	2.7	27	83	10	87	29	8	17	44	1.77
43604--43671	28	2.5	27	81	9	84	32	8	13	45	1.74
43716--43796	28	3.0	26	80	10	90	25	9	18	45	1.80
43443--43957	119	4.3	119	94	2	863	27	11	15	46	1.79
43841--43905	28	2.3	27	84	7	85	30	7	15	46	1.74
43846--43928	26	3.1	25	81	11	85	28	8	14	48	1.73
43472--43957	237	2.0	239	94	1	861	27	11	15	45	1.80
43924--44027	52	2.0	54	92	3	176	32	13	16	37	1.87
44015--44279	30	8.1	30	69	16	161	33	10	11	44	1.76
44032--44311	67	4.2	67	98	0	524	31	11	11	45	1.76
44578--44702	64	2.0	63	88	1	187	31	14	11	43	1.80
44868--44917	15	3.3	15	97	0	91	34	20	4	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44859--44917	30	2.0	30	89	0	91	32	20	3	44	1.68
45331--45566	40	5.5	41	70	17	149	27	32	18	22	1.97
45372--45566	43	4.4	43	72	14	164	27	32	18	21	1.97
45319--45662	133	2.6	133	92	1	539	27	31	18	22	1.97
45594--45704	40	2.7	39	75	8	105	25	32	18	24	1.97
45870--45924	3	18.0	3	85	10	76	30	0	3	65	1.10
47696--47738	19	2.3	19	83	0	50	25	4	9	60	1.47
50637--50782	60	2.5	60	78	11	158	32	19	16	30	1.94
51419--51471	26	2.0	26	96	0	97	50	9	11	28	1.69
55781--56420	318	2.0	318	99	0	1253	30	15	27	27	1.96
56470--57557	120	9.1	119	82	4	1104	28	15	27	28	1.97
57518--57621	33	3.2	33	98	0	199	25	23	23	28	1.99
57300--57849	300	1.8	295	82	6	692	27	17	26	28	1.98
61082--61131	21	2.4	21	89	0	73	44	32	16	8	1.76
64319--64506	97	1.9	98	83	3	245	34	13	9	42	1.77
76313--76349	16	2.2	18	85	9	51	67	2	0	29	1.04

Tables:   1

The End!