genome.fa.s2316.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002316.1 Hibiscus syriacus cultivar Beakdansim tig00004717_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75263

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1406--1549	78	1.8	78	92	0	243	43	11	5	40	1.64
3339--3394	21	2.7	21	97	0	103	25	21	25	28	1.99
3416--3480	21	3.1	21	95	0	112	23	26	21	29	1.99
11095--11259	82	2.0	83	97	1	314	35	13	18	32	1.89
11505--11585	21	3.8	21	80	6	81	25	32	24	17	1.97
11505--11565	23	2.8	22	85	7	79	24	32	24	18	1.97
16824--17087	57	4.5	57	72	15	177	40	12	8	38	1.75
18540--18782	82	2.9	83	92	3	393	46	12	2	39	1.53
21578--21608	2	15.5	2	93	0	53	45	0	3	51	1.17
25948--26029	29	2.8	29	92	1	128	32	14	8	43	1.76
26424--26461	19	2.0	20	90	10	62	21	26	36	15	1.93
30713--30794	29	2.8	29	94	1	137	32	14	9	42	1.79
33551--33619	21	3.3	21	66	22	63	31	18	15	33	1.93
33551--33658	42	2.6	42	93	0	180	29	22	14	33	1.94
33572--33640	21	3.3	20	66	22	52	26	20	15	37	1.93
36247--36343	41	2.4	41	85	1	124	19	18	23	38	1.93
36248--36320	20	3.6	20	77	1	74	21	17	24	35	1.95
36454--36521	6	11.3	6	100	0	136	33	48	17	0	1.48
37182--37238	25	2.4	24	82	8	73	36	29	17	15	1.91
44151--44182	15	2.2	14	94	5	55	34	15	15	34	1.90
44180--44229	20	2.6	20	85	14	70	32	18	26	24	1.97
44616--44816	59	3.4	59	90	0	321	34	13	17	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44699--45471	59	13.8	51	79	13	247	35	13	18	33	1.89
44616--45639	118	8.5	118	78	10	951	35	12	17	33	1.88
44732--45033	99	3.0	99	88	5	396	36	13	17	32	1.88
44906--44991	43	2.0	43	90	0	136	43	9	11	36	1.73
44918--44994	20	3.7	21	71	17	63	42	10	12	33	1.77
44747--45050	102	3.0	102	88	5	406	37	12	15	33	1.86
44949--45639	59	11.7	59	90	2	985	35	12	18	33	1.88
45860--46013	68	2.2	69	87	2	211	31	13	24	31	1.93
45985--46032	19	2.5	19	96	0	87	16	18	31	33	1.94
46004--46200	68	2.9	67	88	3	279	29	13	25	31	1.94
56363--56446	43	2.0	43	85	0	114	34	15	19	30	1.93
56362--56458	43	2.3	43	81	0	113	32	14	21	30	1.93
56884--56948	21	3.1	21	88	0	85	1	38	10	49	1.47
63837--63948	41	2.7	42	74	17	126	33	17	17	31	1.94
63811--64113	82	3.7	83	77	4	299	32	19	17	30	1.95
73132--73271	43	3.3	43	79	2	138	23	17	27	32	1.96
73132--73295	43	3.8	43	74	7	136	24	17	26	31	1.97
73297--73379	43	1.9	43	85	7	114	26	15	25	32	1.96
73744--73798	21	2.6	21	88	0	92	0	41	20	38	1.52

Tables:   1

The End!