genome.fa.s2317.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002317.1 Hibiscus syriacus cultivar Beakdansim tig00004719_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118665

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994--1057	21	2.9	22	77	15	60	48	1	1	48	1.20
4422--4478	29	1.9	30	89	3	89	54	15	10	19	1.70
9621--9723	44	2.3	45	93	3	172	40	7	13	37	1.74
10415--10442	2	14.0	2	100	0	56	50	0	0	50	1.00
17128--17171	23	1.9	23	95	0	79	11	36	0	52	1.38
22935--22978	22	2.0	22	86	0	61	27	27	29	15	1.96
23004--23048	22	2.0	22	86	4	63	31	33	26	8	1.87
24417--24630	103	2.1	103	97	0	401	25	13	23	37	1.92
24642--24714	23	3.3	23	76	3	78	23	23	21	31	1.98
28453--28494	22	1.9	22	85	0	57	33	28	21	16	1.95
28521--28565	22	2.0	22	86	4	63	31	33	26	8	1.87
29931--30145	103	2.1	103	96	0	394	27	13	22	36	1.92
30160--30232	23	3.3	23	80	3	87	23	23	23	30	1.99
33970--34013	22	2.0	22	86	0	61	27	27	29	15	1.96
35451--35668	103	2.1	103	98	0	418	26	13	22	37	1.92
35680--35752	23	3.3	23	78	3	78	24	23	21	30	1.99
37353--37394	22	1.9	22	85	0	57	40	2	11	45	1.54
40991--41052	28	2.2	27	83	11	79	25	3	12	58	1.50
40993--41047	28	2.0	28	88	0	83	27	3	14	54	1.57
41183--41208	2	13.0	2	100	0	52	50	0	0	50	1.00
41666--41691	3	8.7	3	100	0	52	65	0	0	34	0.93
47199--47235	3	12.3	3	88	0	56	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47347--47387	16	2.6	16	92	0	64	12	53	17	17	1.72
48544--48583	12	3.1	13	82	10	55	40	0	0	60	0.97
53000--53042	22	2.0	22	100	0	86	9	23	48	18	1.76
53039--53156	9	12.3	9	74	10	83	28	27	27	15	1.96
53041--53157	19	6.1	19	78	10	112	29	28	26	16	1.97
53083--53157	29	2.5	31	87	8	111	30	26	26	16	1.96
60319--60349	7	4.4	7	100	0	62	25	29	29	16	1.96
60338--60381	22	2.0	24	82	13	58	11	22	50	15	1.76
60380--60515	19	7.1	19	80	9	132	27	28	27	16	1.97
60432--60514	29	2.8	29	85	5	87	28	27	27	15	1.96
60448--60515	9	6.9	10	80	15	63	30	25	26	17	1.97
70259--70356	10	9.9	10	81	14	98	84	0	15	0	0.62
70260--70356	21	4.9	19	81	15	108	85	0	14	0	0.60
70263--70356	27	3.6	25	84	12	118	86	0	13	0	0.58
70265--70355	38	2.3	38	85	9	121	85	0	14	0	0.59
70260--70337	7	11.3	7	86	8	106	87	0	12	0	0.55
70263--70338	1	76.0	1	76	0	71	88	0	11	0	0.52
71494--72136	83	7.7	83	98	0	1223	25	13	22	37	1.91
72882--73485	113	5.4	113	89	2	880	37	14	18	29	1.91
72882--73485	223	2.7	225	88	4	887	37	14	18	29	1.91
73832--73927	3	32.0	3	84	0	129	39	1	0	59	1.04
73832--73927	30	3.2	30	93	0	165	39	1	0	59	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74040--74080	16	2.6	16	96	0	73	9	56	17	17	1.67
75286--75325	12	3.1	13	82	10	55	40	0	0	60	0.97
91798--91849	20	2.6	20	82	11	70	17	21	26	34	1.95
91798--91865	19	3.5	19	84	6	73	17	23	26	32	1.97
91869--91911	5	8.2	5	85	10	59	18	55	20	4	1.60
91871--91918	22	2.2	22	100	0	96	18	50	22	8	1.74
97705--97794	43	2.1	43	100	0	180	41	12	6	40	1.69
107122--107157	2	18.5	2	94	5	65	50	0	0	50	1.00
107169--107212	21	2.1	21	86	0	61	54	0	0	45	0.99
107211--107276	12	5.6	12	78	10	73	28	46	12	12	1.77
109344--109375	2	16.0	2	100	0	64	50	0	0	50	1.00
110036--110108	33	2.3	33	83	4	87	52	4	4	39	1.40
110193--110217	2	12.5	2	100	0	50	48	0	0	52	1.00
110706--110733	12	2.3	12	100	0	56	50	0	0	50	1.00
111541--111580	20	2.0	20	90	9	64	55	2	0	42	1.13
117952--117985	2	17.5	2	87	6	52	0	0	47	52	1.00
118471--118518	24	2.0	25	87	4	71	29	8	8	54	1.60

Tables:   1

The End!