Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000232.1 Hibiscus syriacus cultivar Beakdansim tig00000402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 84878
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Found at i:609 original size:112 final size:114
Alignment explanation
Indices: 438--1107 Score: 948
Period size: 112 Copynumber: 6.0 Consensus size: 114
428 CGTCATGCAG
* * * * * *
438 TTCATCTTTTAATTCC-ATGATTGG-TTATGTGGTTCCTACCGAACCAGATCAGATAACTC-AAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
* * *
500 -ACACTTCCAGAAGATAC-TTGGG-CCTCTTATTTCTACCATGAGCAAA
66 AACACTTCCAGAAGATGCATTGGGTCTTCTTATTTCTACTATGAGCAAA
* *
546 TTCATCTTTCAAATCTAATGATTGGTTTTTTTAGGGTTCATACCAAACCAGATCAGATAACTCAA
1 TTCATCTTTCAAATCCAATGATTGG--TTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAA
611 AGAACACTTCCAG-AGATGCTATTGGGTCTTC-T-TTTCTACTATGAGCAAA
64 AGAACACTTCCAGAAGATGC-ATTGGGTCTTCTTATTTCTACTATGAGCAAA
* *
660 TTCATCTTTCAAATCCAATGA-TGGTTTTTGGAGTTCATACCAAACCATATCAGATAACTC-AAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
723 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATG-GCAAA
66 AACACTTCCAGAAGATGC-ATTGGGTCTTCTTATTTCTACTATGAGCAAA
* *
772 TGCATCTTTCAAATCTAATGA---GTTTTTGGGGTTCATACC-AACCAGATCA-ATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
832 AACACTTCCAGAAGATGCTATTGGGTCCTTCTTATTTCTACTATGAGCAAA
66 AACACTTCCAGAAGATGC-ATTGGGT-CTTCTTATTTCTACTATGAGCAAA
* *
883 TTCATCTTTTAAATCCAATGATTGGTTTTTGGGGTTCATACC-AATCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
*
947 AA-AC-TCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCACA
66 AACACTTCCAGAAGATGC-ATTGGGTCTTCTTATTTCTACTATGAGCAAA
*
995 TTCATCTTTCAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATAAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
*
1060 AACACTTCCAGAAGATGTTATTGGGTCTTCTTATTTCTACTATGAGCA
66 AACACTTCCAGAAGATG-CATTGGGTCTTCTTATTTCTACTATGAGCA
1108 CATGGCACTT
Statistics
Matches: 511, Mismatches: 28, Indels: 39
0.88 0.05 0.07
Matches are distributed among these distances:
108 20 0.04
109 46 0.09
110 49 0.10
111 74 0.14
112 119 0.23
113 64 0.13
114 77 0.15
115 59 0.12
116 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
AACACTTCCAGAAGATGCATTGGGTCTTCTTATTTCTACTATGAGCAAA
Found at i:874 original size:223 final size:226
Alignment explanation
Indices: 438--1107 Score: 969
Period size: 223 Copynumber: 3.0 Consensus size: 226
428 CGTCATGCAG
* * * *
438 TTCATCTTTTAATTCC-ATGATTGG-TTATGTG-GTTCCTACCGAACCAGATCAGATAACTCAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTG-GAGTTCATACC-AACCAGATCAGATAACTCAAG
* * *
500 -ACACTTCCAGAAGATAC--TTGGG-CCTCTTATTTCTACCATGAGCAAATTCATCTTTCAAATC
64 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAATTCATCTTTCAAATC
*
561 TAATGATTGGTTTTTTTAGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAG-A
129 TAATGA-T-G--TTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAA
625 GATGCTATTGGGTCTTC-T-TTTCTACTATGAGCAAA
190 GATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
*
660 TTCATCTTTCAAATCCAATGA-TGGTTTTTGGAGTTCATACCAAACCATATCAGATAACTCAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTTTTGGAGTTCATACC-AACCAGATCAGATAACTCAAGA
*
724 ACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATG-GCAAATGCATCTTTCAAATCT
65 ACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAATTCATCTTTCAAATCT
788 AATGA-GTTTTTGGGGTTCATACC-AACCAGATCA-ATAACTCAAAGAACACTTCCAGAAGATGC
130 AATGATGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGC
850 TATTGGGTCCTTCTTATTTCTACTATGAGCAAA
195 TATTGGGT-CTTCTTATTTCTACTATGAGCAAA
* * *
883 TTCATCTTTTAAATCCAATGATTGGTTTTTGGGGTTCATACCAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTTTTGGAGTTCATACCAACCAGATCAGATAACTC-AAGA
* *
948 A-AC-TCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCACATTCATCTTTCAAATCC
65 ACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAATTCATCTTTCAAATCT
*
1011 AATGATTGGTTTTTGGGGTTCATACCAAACCAGATAAGATAACTCAAAGAACACTTCCAGAAGAT
130 AATGA-T-GTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGAT
*
1076 GTTATTGGGTCTTCTTATTTCTACTATGAGCA
193 GCTATTGGGTCTTCTTATTTCTACTATGAGCA
1108 CATGGCACTT
Statistics
Matches: 409, Mismatches: 20, Indels: 33
0.89 0.04 0.07
Matches are distributed among these distances:
219 22 0.05
220 24 0.06
221 20 0.05
222 57 0.14
223 115 0.28
224 40 0.10
226 48 0.12
227 47 0.11
228 36 0.09
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (226 bp):
TTCATCTTTCAAATCCAATGATTGGTTTTTGGAGTTCATACCAACCAGATCAGATAACTCAAGAA
CACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAATTCATCTTTCAAATCTA
ATGATGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
ATTGGGTCTTCTTATTTCTACTATGAGCAAA
Found at i:1070 original size:337 final size:332
Alignment explanation
Indices: 468--1103 Score: 1014
Period size: 337 Copynumber: 1.9 Consensus size: 332
458 TTGGTTATGT
*
468 GGTTCCTACCGAACCAGATCAGATAACTCAAGACACTTCCAGAAGATACTTGGGCCTCTTATTTC
1 GGTTCATACCGAACCAGATCAGATAACTCAAGACACTTCCAGAAGATACTTGGGCCTCTTATTTC
*
533 TACCATGAGCAAATTCATCTTTCAAATCTAATGATTGGTTTTTTTAGGGTTCATACCAAACCAGA
66 TACCATGAGCAAATTCATCTTTCAAATCCAATGATTGG-TTTTTTAGGGTTCATACCAAACCAGA
598 TCAGATAACTCAAAGAACACTTCCAGAGATGCTATTGGGTCTTCTTTTCTACTATGAGCAAATTC
130 TCAGATAACTCAAAGAACACTTCCAGAGATGCTATTGGGTCTTCTTTTCTACTATGAGCAAATTC
* *
663 ATCTTTCAAATCCAATGATGGTTTTTGGAGTTCATACCAAACCATATCAGATAACTCAAGAACAC
195 ATCTTTCAAATCCAATGATGGTTTTTGGAGTTCATACCAAACCAGATAAGATAACTCAAGAACAC
728 TTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGGCAAATGCATCTTTCAAATCTAATGA
260 TTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGGCAAATGCATCTTTCAAATCTAATGA
793 GTTTTTGG
325 GTTTTTGG
*
801 GGTTCATACC-AACCAGATCA-ATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGTCCTTCT
1 GGTTCATACCGAACCAGATCAGATAACTC-AAG-ACACTTCCAGAAGATAC--TTGGG-CC-TCT
* * *
864 TATTTCTACTATGAGCAAATTCATCTTTTAAATCCAATGATTGG-TTTTTGGGGTTCATACC-AA
60 TATTTCTACCATGAGCAAATTCATCTTTCAAATCCAATGATTGGTTTTTTAGGGTTCATACCAAA
*
927 TCAGATCAGATAACTCAAAGAA-AC-TCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGA
125 CCAGATCAGATAACTCAAAGAACACTTCCAG-AGATGCTATTGGGTCTTC-T-TTTCTACTATGA
* *
990 GCACATTCATCTTTCAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATAAGATAACT
187 GCAAATTCATCTTTCAAATCCAATGA-TGGTTTTTGGAGTTCATACCAAACCAGATAAGATAACT
*
1055 CAAAGAACACTTCCAGAAGATGTTATTGGGTCTTCTTATTTCTACTATG
251 C-AAGAACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATG
1104 AGCACATGGC
Statistics
Matches: 280, Mismatches: 12, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
331 7 0.03
332 18 0.06
333 45 0.16
334 24 0.09
335 58 0.21
336 38 0.14
337 90 0.32
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33
Consensus pattern (332 bp):
GGTTCATACCGAACCAGATCAGATAACTCAAGACACTTCCAGAAGATACTTGGGCCTCTTATTTC
TACCATGAGCAAATTCATCTTTCAAATCCAATGATTGGTTTTTTAGGGTTCATACCAAACCAGAT
CAGATAACTCAAAGAACACTTCCAGAGATGCTATTGGGTCTTCTTTTCTACTATGAGCAAATTCA
TCTTTCAAATCCAATGATGGTTTTTGGAGTTCATACCAAACCAGATAAGATAACTCAAGAACACT
TCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGGCAAATGCATCTTTCAAATCTAATGAG
TTTTTGG
Found at i:7404 original size:15 final size:17
Alignment explanation
Indices: 7384--7420 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
7374 TTTATTTAAT
7384 ATAGG-ATTTA-TAAAA
1 ATAGGAATTTAGTAAAA
7399 ATAGGATATTTAGTAAAA
1 ATAGGA-ATTTAGTAAAA
7417 ATAG
1 ATAG
7421 AAAACAGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.26
17 5 0.26
18 9 0.47
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.32
Consensus pattern (17 bp):
ATAGGAATTTAGTAAAA
Found at i:7604 original size:19 final size:18
Alignment explanation
Indices: 7576--7614 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
7566 ATATATTTAT
7576 TATATAAATAATAAAAAA
1 TATATAAATAATAAAAAA
*
7594 TATATTAAATAATAATAAA
1 TATA-TAAATAATAAAAAA
7613 TA
1 TA
7615 ATATGCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TATATAAATAATAAAAAA
Found at i:7612 original size:10 final size:10
Alignment explanation
Indices: 7579--7617 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
7569 TATTTATTAT
7579 ATAAATAATA
1 ATAAATAATA
*
7589 AAAAAT-ATA
1 ATAAATAATA
*
7598 TTAAATAATA
1 ATAAATAATA
7608 ATAAATAATA
1 ATAAATAATA
7618 TGCAAATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
ATAAATAATA
Found at i:7834 original size:2 final size:2
Alignment explanation
Indices: 7827--7852 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7817 AATTTGATTT
7827 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7853 ATGCTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8997 original size:22 final size:23
Alignment explanation
Indices: 8969--9012 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
8959 ATTAATTATT
*
8969 TAATAATAAT-ATTAAAACAAAA
1 TAATAATAATAAATAAAACAAAA
8991 TAATAATAATAAATAAAACAAA
1 TAATAATAATAAATAAAACAAA
9013 TGAAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (23 bp):
TAATAATAATAAATAAAACAAAA
Found at i:11371 original size:44 final size:42
Alignment explanation
Indices: 11315--11454 Score: 136
Period size: 34 Copynumber: 3.5 Consensus size: 42
11305 AATTTATTAA
* *
11315 TGTTATGGTGTTATTTATTTTAATAAACTTATTGAGATTTAAT-G
1 TGTTATGATGTTATTTA-TTT--TAAACTTATTGAGACTTAATGG
*
11359 TGTTATGATGTTATTTATTTTAGACTTATTGAGACTTAA---
1 TGTTATGATGTTATTTATTTTAAACTTATTGAGACTTAATGG
*
11398 TG----G-TGTTATTTATTTTAGACTTATTGAGACTTAATGG
1 TGTTATGATGTTATTTATTTTAAACTTATTGAGACTTAATGG
* *
11435 TGTTATGGTATTATTTATTT
1 TGTTATGATGTTATTTATTT
11455 ACTTGTTTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 18
0.79 0.04 0.17
Matches are distributed among these distances:
34 31 0.37
35 1 0.01
37 2 0.02
39 2 0.02
41 18 0.21
42 11 0.13
43 3 0.04
44 16 0.19
ACGTcount: A:0.26, C:0.04, G:0.17, T:0.53
Consensus pattern (42 bp):
TGTTATGATGTTATTTATTTTAAACTTATTGAGACTTAATGG
Found at i:11405 original size:34 final size:34
Alignment explanation
Indices: 11367--11440 Score: 148
Period size: 34 Copynumber: 2.2 Consensus size: 34
11357 TGTGTTATGA
11367 TGTTATTTATTTTAGACTTATTGAGACTTAATGG
1 TGTTATTTATTTTAGACTTATTGAGACTTAATGG
11401 TGTTATTTATTTTAGACTTATTGAGACTTAATGG
1 TGTTATTTATTTTAGACTTATTGAGACTTAATGG
11435 TGTTAT
1 TGTTAT
11441 GGTATTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (34 bp):
TGTTATTTATTTTAGACTTATTGAGACTTAATGG
Found at i:12567 original size:22 final size:25
Alignment explanation
Indices: 12537--12583 Score: 73
Period size: 22 Copynumber: 2.0 Consensus size: 25
12527 AATATTTTTT
12537 TATATTTTTAATAAT-T-AAATAAA
1 TATATTTTTAATAATATAAAATAAA
12560 TATA-TTTTAATAATATAAAATAAA
1 TATATTTTTAATAATATAAAATAAA
12584 AATTCTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 10 0.45
23 5 0.23
24 7 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
TATATTTTTAATAATATAAAATAAA
Found at i:19231 original size:21 final size:21
Alignment explanation
Indices: 19207--19247 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
19197 GGATCTTATG
* *
19207 TGGTCTTTCGGGAAAAATATA
1 TGGTCCTTCGAGAAAAATATA
*
19228 TGGTCCTTCGAGACAAATAT
1 TGGTCCTTCGAGAAAAATAT
19248 GTGGCACTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (21 bp):
TGGTCCTTCGAGAAAAATATA
Found at i:19279 original size:23 final size:23
Alignment explanation
Indices: 19245--19298 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
19235 TCGAGACAAA
*
19245 TATGTGGCACTTCGGTGCAAACC
1 TATGTGGTACTTCGGTGCAAACC
19268 TATGTGGTACTTCGGTGCAAACC
1 TATGTGGTACTTCGGTGCAAACC
19291 TATGTGGT
1 TATGTGGT
19299 CTGTAACACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.31
Consensus pattern (23 bp):
TATGTGGTACTTCGGTGCAAACC
Found at i:20350 original size:12 final size:12
Alignment explanation
Indices: 20327--20359 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
20317 TGCCCCGATT
20327 ACCCGAATACCCG
1 ACCCG-ATACCCG
20340 ACCCGATACCCG
1 ACCCGATACCCG
20352 ACCCGATA
1 ACCCGATA
20360 AATATTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.30, C:0.45, G:0.15, T:0.09
Consensus pattern (12 bp):
ACCCGATACCCG
Found at i:20453 original size:47 final size:50
Alignment explanation
Indices: 20363--20461 Score: 134
Period size: 49 Copynumber: 2.0 Consensus size: 50
20353 CCCGATAAAT
20363 ATTAAAAATAATTATTATATATATATACAATATTAATAAATTTAAATTAA
1 ATTAAAAATAATTATTATATATATATACAATATTAATAAATTTAAATTAA
* * *
20413 ATTAAAAAT-A-TATATATATATATATATAAT-TT-ATATATTTAATTTAA
1 ATTAAAAATAATTAT-TATATATATATACAATATTAATAAATTTAAATTAA
20460 AT
1 AT
20462 ATATATACCC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
47 15 0.33
48 5 0.11
49 16 0.36
50 9 0.20
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (50 bp):
ATTAAAAATAATTATTATATATATATACAATATTAATAAATTTAAATTAA
Found at i:21003 original size:19 final size:18
Alignment explanation
Indices: 20979--21024 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
20969 TCCTTTAGGA
20979 GTGTATCAGTACACTACAG
1 GTGTATC-GTACACTACAG
*
20998 GTGTATCGATACACTACGG
1 GTGTATCG-TACACTACAG
21017 GTGTATCG
1 GTGTATCG
21025 GTACCCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 1 0.04
19 24 0.96
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (18 bp):
GTGTATCGTACACTACAG
Found at i:24886 original size:21 final size:21
Alignment explanation
Indices: 24861--24912 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
24851 ATTAAGGGTA
*
24861 GTATCGATACCTGTTGAAGAG
1 GTATCGATACATGTTGAAGAG
24882 GTATCGATACATGTTGAAGAG
1 GTATCGATACATGTTGAAGAG
24903 GTATCGATAC
1 GTATCGATAC
24913 TGTAAGGGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (21 bp):
GTATCGATACATGTTGAAGAG
Found at i:25626 original size:23 final size:23
Alignment explanation
Indices: 25587--25647 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
25577 TCGGGACAAA
* *
25587 TATATGGCACTTAGGTGCAAACC
1 TATATGGTACTTCGGTGCAAACC
*
25610 TATGTGGTACTTCGGTGCAAACC
1 TATATGGTACTTCGGTGCAAACC
25633 TATATGGTACTTCGG
1 TATATGGTACTTCGG
25648 GATAATTATG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (23 bp):
TATATGGTACTTCGGTGCAAACC
Found at i:26450 original size:3 final size:3
Alignment explanation
Indices: 26442--26515 Score: 78
Period size: 3 Copynumber: 24.7 Consensus size: 3
26432 CTTAACCATT
* * *
26442 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -CA TAG TAT TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * *
26487 TAG TAA TAA TAA TAA AAA TGA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26516 GCTAATATAA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
2 1 0.02
3 55 0.95
4 2 0.03
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:27405 original size:20 final size:19
Alignment explanation
Indices: 27380--27472 Score: 98
Period size: 20 Copynumber: 4.8 Consensus size: 19
27370 GTAAAATTTC
* *
27380 AAAATCTGACTTCCAACCT
1 AAAATCTGAGTTGCAACCT
* *
27399 AAAAATCTGGGTAGCAACCT
1 -AAAATCTGAGTTGCAACCT
* *
27419 TAAATCTG-GTTTCAACCT
1 AAAATCTGAGTTGCAACCT
27437 AAAATCTGAGTTGCAACCT
1 AAAATCTGAGTTGCAACCT
*
27456 AAAAATCTGGGTTGCAA
1 -AAAATCTGAGTTGCAA
27473 TCTTAAACCA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
18 15 0.25
19 16 0.26
20 30 0.49
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (19 bp):
AAAATCTGAGTTGCAACCT
Found at i:27425 original size:19 final size:19
Alignment explanation
Indices: 27393--27472 Score: 99
Period size: 20 Copynumber: 4.2 Consensus size: 19
27383 ATCTGACTTC
*
27393 CAACCTAAAAATCTGGGTAG
1 CAACCT-AAAATCTGGGTTG
* *
27413 CAACCTTAAATCT-GGTTT
1 CAACCTAAAATCTGGGTTG
*
27431 CAACCTAAAATCTGAGTTG
1 CAACCTAAAATCTGGGTTG
27450 CAACCTAAAAATCTGGGTTG
1 CAACCT-AAAATCTGGGTTG
27470 CAA
1 CAA
27473 TCTTAAACCA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
18 15 0.29
19 15 0.29
20 21 0.41
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (19 bp):
CAACCTAAAATCTGGGTTG
Found at i:27437 original size:38 final size:38
Alignment explanation
Indices: 27393--27465 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
27383 ATCTGACTTC
* *
27393 CAACCTAAAAATCTGGGTAGCAACCT-TAAATCTGGTTT
1 CAACCT-AAAATCTGAGTAGCAACCTAAAAATCTGGTTT
*
27431 CAACCTAAAATCTGAGTTGCAACCTAAAAATCTGG
1 CAACCTAAAATCTGAGTAGCAACCTAAAAATCTGG
27466 GTTGCAATCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 17 0.55
38 14 0.45
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (38 bp):
CAACCTAAAATCTGAGTAGCAACCTAAAAATCTGGTTT
Found at i:28331 original size:17 final size:16
Alignment explanation
Indices: 28290--28329 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
28280 CCACAAAATA
28290 ATTTTTTTAGTATAAT
1 ATTTTTTTAGTATAAT
28306 ATTTTTTTAGTATAAT
1 ATTTTTTTAGTATAAT
28322 ATTTTTTT
1 ATTTTTTT
28330 TATTTTTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (16 bp):
ATTTTTTTAGTATAAT
Found at i:30203 original size:42 final size:42
Alignment explanation
Indices: 30144--30227 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
30134 GACCTATCAT
30144 CGAGAGTTGAACTTTCTTTTATCAAAGACGACTTTTAATTAA
1 CGAGAGTTGAACTTTCTTTTATCAAAGACGACTTTTAATTAA
30186 CGAGAGTTGAACTTTCTTTTATCAAAGACGACTTTTAATTAA
1 CGAGAGTTGAACTTTCTTTTATCAAAGACGACTTTTAATTAA
30228 TCATAACTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (42 bp):
CGAGAGTTGAACTTTCTTTTATCAAAGACGACTTTTAATTAA
Found at i:30658 original size:4 final size:4
Alignment explanation
Indices: 30649--33205 Score: 1163
Period size: 4 Copynumber: 640.0 Consensus size: 4
30639 AGATGCATCA
30649 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * *
30697 TGTG TGTG TGTG TGTT TGTG TGTG TGTG TGTG TGTG TGTT TGTG TGTT
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * *
30745 TGTG TGTG TGTT TGTG TGTG TGTG TGTG TGTC TGTG CGTG TGCG TGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * *
30793 TGCG CGTG CGTG CGCG TGCG TGCG TGTG TGTG GGTG CGCG TGCG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * *
30841 TGCG TGCG CGCG TGCG TGTG TGTG CGTG CGTG TGCG TGTG TGTG TGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
*
30889 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGCG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * *
30937 TGCG CGTG CGTG CGTG TGTG TGTG TGGG TGCG CGTG CGTG CGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * *
30985 CGTG TGTG CGCG TGTG TGTG CGTG TGTG CGTG TGTG TGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * *
31033 TGTG CGCG TGCG TGTG TGTG TGTCG -GTG CGCG TGTG CGGG TGTG CGCG
1 TGTG TGTG TGTG TGTG TGTG TGT-G TGTG TGTG TGTG TGTG TGTG TGTG
* * * * *
31081 TGTG TGTG TGTG TGTG TGTG TGTG TGCG CGCG CGTG CGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * *
31129 TGGG TGCG TGCG TGCG TGTG TGTG CGTG TGTG TGTG TGTG TGTG TGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * *
31177 CGTG CGTG TGTG TGTG TGTG TGGG TGCG CGTG TGCG TGTG CGGG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * *
31225 CGTG TGCG CGCG CGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * *
31273 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGCG TGCG TGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * *
31321 TGTG CGCG TGCG CGTG CGTG CGCG TGTG TGTG TG-G TGCG CGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * * *
31368 TGCG TGCG TGCG CGCG CGCG CGCG CGTG TGTG TGCG TGCG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * *
31416 TGTG CGTG CGTG CGTG TGTG TGTG CGGG TGTG CGTG CGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * * *
31464 TGTG TGTG CGTG TGCG GGTG TGCG TGCG CGTG CGCG TGCG CGTG CGGG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * *
31512 TGCG CGTG CGCG CGTG TGTG TGTG CGTG TGCG TGTG CGCG AGCG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * ** * *
31560 CGCG TGCG CGTG CGTG TGGG TACG CGTG TGTG TGTG CGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * ** * * * * * *
31608 TGTG TGCG TGCG TGCG TGCG TGCA TGCG TGCG CGTG CGTG CGTG CGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * *
31656 CGTG CGTG CGTG TGTG TGCG TGTG TGTG TGTG TGTG TGTG TGGG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* *
31704 TTTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGGG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * ** * * *
31752 TGCG CGTG CGCG CGTG TCCG TGCG TGTG TGTG TGTG CGTG TGCG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * ** * * *** * * *
31800 CGTG CGCG TGCG TGTG CAG-G TGTG CATG TGCG CGTG CACG CGCG CGTG
1 TGTG TGTG TGTG TGTG -TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * *
31848 TGTG TGTG TGTG TGTG TGTG GGTG CGTG TGTG TGCG CGTG CGCG TGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * * *
31896 TGCG TGTG TGTG GGGG TGCG CGTG CGCG CGTG TGTG TGCG TGCG CGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * *
31944 TGTG TGCTG TGTG TGCG TGTG TGCG CGTG CGTG TGTG TGTG TG-G TGCG
1 TGTG TG-TG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * *
31992 CGTG TGCG TGTG CG-G TGTG TGTG TG-G TGCG TGCG CGAG CGCG CGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * *
32038 TGTG GGTG CGCG TGCG CGCG TGTG CGTG TGTG TGCG TGCG TGCG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * *
32086 TGTG TGTG TGTG CGGG TGCG GGTG TGCG TGCG TGTG TGTG TCTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * *
32134 TGTG TGTG CGTG TGCG GGTG TGCG TGCG TGTG CGTG TGCG TGTG CGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * * *
32182 TGCG CGTG CGCG TGCG TGTG GGTG CGCG TGCG CGCG TGTG TGTG CGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * *
32230 TGTG TTTG TGTG TGCG CGTG CGTG CGCG CGTG CGCG TGCG TGTG GGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * *
32278 CGTG TGTG TGCG TGTG TGTG CGTG TGTG CGTG CGTG CGTG CGTG CGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * ** *
32326 CGTG TGCG TGTG TGTG TGTG TGTG TGTG TGCC TGTG TGTG TGCG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * **
32374 CGTG TGCG TGCG TGCG TGCG TGTG TGTG TGTG TGTG TGTG TGTG CCTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * *
32422 TGTG TGTG CGTG TGTG CGTG TGTG CGTG CGTG TGT- TTTG TGTG CGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * *
32469 TGCG TGCG CGCG TGCG CGTG CGTG TGGG TGCG TGTG TGCG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * *
32517 CGTG TGTG CGTG TGTG CGTG CGTG CGTG CGTG CGTG CGTG TGCG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
** * * *
32565 TGTG TGTG TGTG TGTG CCTG TGTG TGTG TGTG CGTG TGTG CGTG CGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * ** *
32613 CGTG CGTG TGTG TGTG TGTG TGTG TGCC TGTG TGTG TGCG TGTG TCGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG T-GTG
* * * * * * * * *
32662 TGTG CGCG CGTG CGTG TGCG TGCG TGTG TGTG TG-G TGCG TGTC CGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * ** *
32709 CTGTG TGTG CTGCG TGTG TGTG TGCG CGCG AGTG TGTG TGGG TGCA TGTC
1 -TGTG TGTG -TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * *
32759 CGTG CGTG TGTG TGCG TGCG TGTG TGTG TGTG CGTG CGTG CGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * *
32807 TGTG TGCG TGCG TGCG TGTG TGTG TGTG TGTG CGTG TGCG TGTG CGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * *
32855 TGCG GGTG TGCG TGTG TGCG TGCG TGTG TCTG TGTG TGTG TGCG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * *
32903 CGTG TGCG TGTG CGTT TGCG TGTG CGTG TGCG TGCG TGCG GGTG TGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * *
32951 TGTG CGCG TGCG CGTG CGTG TGTG TGTG TGGG TGCG CGTG CGCG CGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * *
32999 TCTG TGCG TGCG CGCG CGTG TGTG TGCG TGTG TGTA CGT- TGCG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * *
33046 CGTG TGTG CGTG CGTG CGGG TGTG CGTG TGCG TGCG TGTG TGTG TGGG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * * * * * * *
33094 GGTG CGCG TGCG CGCG TGTC TGTG CGTG CGCG CGCG CGTG TGTG TCTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * * * * * *
33142 TGTC TGTG TGTG TGTG CGCG TGTG CGTG TGTG CGCG TGCG CGTG TGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
*
33190 TGTG TGTG TGCG TGTG
1 TGTG TGTG TGTG TGTG
33206 CGCGTGCATG
Statistics
Matches: 2014, Mismatches: 524, Indels: 30
0.78 0.20 0.01
Matches are distributed among these distances:
3 19 0.01
4 1979 0.98
5 16 0.01
ACGTcount: A:0.00, C:0.15, G:0.50, T:0.35
Consensus pattern (4 bp):
TGTG
Found at i:33206 original size:6 final size:6
Alignment explanation
Indices: 30650--33502 Score: 1165
Period size: 6 Copynumber: 474.2 Consensus size: 6
30640 GATGCATCAT
* * * * * * * *
30650 GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * * * **
30698 GTGTGT GTGTGT GTTTGT GTGTGT GTGTGT GTGTGT GTTTGT GTGTTT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* ** * *
30746 GTGTGT GTGTTT GTGTGT GTGTGT GTGTGTC -TGTGC GTGTGC GTGCGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTG-C GTGTGC GTGTGC GT--GTGC
* * * * * *
30796 GCGTGC GTGCGC GTGCGTGC GTGT-- GTGTGG GTGCGC GTGCGT GTGTGC
1 GTGTGC GTGTGC GT--GTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * *
30844 GTGCGC GCGTGC GTGTGT GTGCGTGC GTGTGC GTGTGT GTGTGC GTGTGT
1 GTGTGC GTGTGC GTGTGC GT--GTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * * *
30894 GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GCGTGT GTGCGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * *
30942 GTGCGTGC GTGTGT GTGTGT GGGTGC GCGTGC GTGCGT GTGTGC GTGT--
1 GT--GTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * *
30990 GTGCGC GTGTGT GTGCGT GTGTGC GTGTGT GTGTGT GTGTGT GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * *
31038 GCGTGC GTGTGT GTGTGTC GGTGCGC GTGTGC GGGTGTGC GCGTGT GTGTGT
1 GTGTGC GTGTGC GTGTG-C -GTGTGC GTGTGC --GTGTGC GTGTGC GTGTGC
* * * * * * *
31090 GTGTGT GTGTGT GTGTGC --GCGC GCGTGC GTGTGT GTGTGT GGGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * *
31136 GTGCGTGC GTGT-- GTGTGC GTGT-- GTGTGT GTGTGT GTGTGC GCGTGC
1 GT--GTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * *
31182 GTGTGT GTGTGT GTGTGG GTGCGC GTGTGC GTGTGC GGGTGTGC GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC --GTGTGC GTGTGC
* * * * * * * * *
31232 GCGCGC GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * *
31280 GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GCGTGC --GTGC GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * *
31326 GCGTGC GCGTGC GTGCGC GTGTGT GTGTG- GTGCGC GTGT-- GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * * *
31371 GTGCGTGC GCGCGC GCGCGC GCGTGT GTGTGC GTGCGT GTGTGT GTGTGC
1 GT--GTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * *
31421 GTGCGTGC GTGTGT GTGTGC GGGTGTGC GTGCGT GTGTGT GTGTGT GTGTGC
1 GT--GTGC GTGTGC GTGTGC --GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * *
31473 GTGTGC GGGTGT GCGTGC GCGTGC GCGTGC GCGTGC GGGTGC GCGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * *
31521 --GCGC GTGTGT GTGTGC GTGTGC GTGTGC GCGAGC GTGTGC GCGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * ** * * *
31567 GCGTGC GTGTGG GTACGC GTGTGT GTGTGC GTGTGT GTGTGT GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * * * *
31615 GTGCGT GCGTGC GTGCATGC GTGCGC GTGCGT GCGTGC GTGCGT GCGTGC
1 GTGTGC GTGTGC GTG--TGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * *
31665 GTGT-- GTGTGC GTGTGT GTGTGT GTGTGT GTGTG- G-GTGT GTTTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * *
31709 GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GTGTGT GTGTGG GTGCGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * *
31757 GTGCGCGC GTGTCC GTGCGT GTGTGT GTGTGC GTGTGC GTGTGC --GTGC
1 GT--GTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * *
31805 GCGTGC GTGTGC AGGTGTGC ATGTGC GCGTGCAC GCGCGC GTGTGT GTGTGT
1 GTGTGC GTGTGC --GTGTGC GTGTGC GTGTG--C GTGTGC GTGTGC GTGTGC
* * * * *
31857 GTGTGT GTGTG- G-GTGC GTGTGT GTGCGC GTGCGC GTGCGTGC GTGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GT--GTGC GTGTGC
* * * * * * * * * *
31905 GTGGGG GTGCGC GTGCGC GCGTGT GTGTGC GTGCGC GCGTGT GTGCTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTG-TGC
* * * *
31954 GTGTGC GTGTGTGC GCGTGC GTGTGT GTGTGTG GTGCGC GTGTGC GTGTGC
1 GTGTGC --GTGTGC GTGTGC GTGTGC GTGTG-C GTGTGC GTGTGC GTGTGC
* * * * * * * *
32005 G-GTGT GTGTGT G-GTGC GTGCGC GAGCGC GCGT-- GTGTGG GTGCGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * *
32049 GTGCGCGC GTGTGC GTGT-- GTGTGC GTGCGTGC GTGTGT GTGTGT GTGTGC
1 GT--GTGC GTGTGC GTGTGC GTGTGC GT--GTGC GTGTGC GTGTGC GTGTGC
* * * * * * *
32099 GGGTGC GGGTGTGC GTGCGT GTGTGT GTCTGT GTGTGT GTGTGC GTGTGC
1 GTGTGC --GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * *
32149 GGGTGT GCGTGC GTGTGC GTGTGC GTGTGC GCGTGC GCGTGC GCGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * *
32197 GTGTGG GTGCGC GTGCGC GCGTGT GTGTGC GTGTGT GTTTGT GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * *
32245 GCGTGC GTGCGC GCGTGC GCGTGC GTGTG- G-GTGC GTGT-- GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * *
32289 GTGT-- GTGTGC GTGTGT GCGTGC GTGCGTGC GTGCGTGC GTGTGC GTGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GT--GTGC GT--GTGC GTGTGC GTGTGC
* * * *
32339 GTGTGT GTGTGT GTGTGC CTGTGT GTGTGC GTGTGC GTGTGC GTGCGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GT--GTGC
* * * * * * *
32389 GTGCGT GTGTGT GTGTGT GTGTGT GTGTGC CTGTGT GTGTGC GTGTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC --GTGTGC
* * * * * * *
32439 GTGTGT GCGTGC GTGTGTTTT GTGTGC GCGTGC GTGCGC GCGTGC GCGTGC
1 GTGTGC GTGTGC GTGTG---C GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * *
32490 GTGTGG GTGCGT GTGTGC GTGTGT GTGCGT GTGTGC GTGTGT GCGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * *
32538 GTGCGTGC GTGCGTGC GTGTGC GTGTGT GTGTGT GTGTGT GTGCCTGT
1 GT--GTGC GT--GTGC GTGTGC GTGTGC GTGTGC GTGTGC GTG--TGC
* * * * *
32586 GTGTGT GTGTGC GTGTGT GCGTGC GTGCGTGC GTGT-- GTGTGT GTGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GT--GTGC GTGTGC GTGTGC GTGTGC
* * * *
32634 GTGTGC CTGTGT GTGTGC GTGTGTC GTGT-- GTGCGC GCGTGC GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTG-C GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * *
32681 GTGCGT GTGTGT GTGGTGC GTGT-C -CGTGC -TGTGT GTGCTGC GTGTGT
1 GTGTGC GTGTGC GT-GTGC GTGTGC GTGTGC GTGTGC GTG-TGC GTGTGC
* * * * * * * * * *
32728 GTGTGC GCGCGA GTGTGT GTGGGTGC ATGTCC GTGCGT GTGTGT GCGTGC
1 GTGTGC GTGTGC GTGTGC GT--GTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * *
32778 GTGTGT GTGTGT GCGTGC GTGCGT GTGTGT GTGTGC GTGCGTGC GTGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GT--GTGC GTGTGC
* * *
32828 GTGTGT GTGTGC GTGTGC GTGTGC GTGTGC GGGTGTGC GTGTGT GCGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC --GTGTGC GTGTGC GTGTGC
* *
32878 GTGTGTC TGTGTGT GTGTGC GTGTGC GTGTGC GTGTGC GTTTGC GTGTGC
1 GTGTG-C -GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * *
32928 GTGTGC --GTGC GTGCGG GTGTGC GTGTGC GCGTGC GCGTGC GTGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * *
32974 GTGTGT GGGTGC GCGTGC --GCGC GTGT-C -TGTGC GTGCGCGC GCGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GT--GTGC GTGTGC
* * * * *
33020 GTGTGC GTGT-- GTGTAC GT-TGC GTGTGC GTGTGT GCGTGC GTGCGG
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * *
33065 GTGTGC GTGTGC --GTGC GTGTGT GTGTGG GGGTGC GCGTGC --GCGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * * *
33109 GTGT-C -TGTGC GTGCGC GCGCGC GTGTGT GTCTGT GTCTGT GTGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * *
33155 GTGCGC GTGTGC GTGT-- GTGCGC GTGCGC GTGTGC GTGTGT GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * *
33201 GTGTGC GCGTGC ATGCGT GCGTGC GTGT-- GTGTGC GCGCGC GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * * * * *
33247 GCGCGC GTGTGC GCGTGT GTGTG- GTGCGC GTGTGT GCGCGC GCGTGT
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * *
33294 GTGTGC -TGTGC GCGT-- GTGTGC GTGTGT GTGCGT GTGTGC GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * * * * *
33339 GCGTGC GTGCGC GCGCGC GTGTGC GTGT-- GTGCGT GTGTGC GTGCGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * *
33385 GTGCGT GTGTGC GTGTTGCGC GTGTGC GTGCGC GTGTGC GTGTGTGC GTGCGC
1 GTGTGC GTGTGC GTG-T--GC GTGTGC GTGTGC GTGTGC --GTGTGC GTGTGC
* * * * *
33438 GCGTGC GCGT-- GTGTGC GTGTGC --GCGC GTGTGT GTGCGC GGGTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC --GTGTGC
*
33484 GGGTGC GTGTGC GTGTGC G
1 GTGTGC GTGTGC GTGTGC G
33503 CGCGTGCGTG
Statistics
Matches: 2240, Mismatches: 456, Indels: 302
0.75 0.15 0.10
Matches are distributed among these distances:
4 113 0.05
5 41 0.02
6 1849 0.83
7 28 0.01
8 199 0.09
9 10 0.00
ACGTcount: A:0.00, C:0.16, G:0.50, T:0.34
Consensus pattern (6 bp):
GTGTGC
Found at i:33223 original size:4 final size:4
Alignment explanation
Indices: 30784--33516 Score: 434
Period size: 4 Copynumber: 707.8 Consensus size: 4
30774 GTCTGTGCGT
* * * *
30784 GTGC GTGC GTGC --GC GTGC GTGC --GC GTGC GTGC GTGT GTGT GGGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * *
30828 GCGC GTGC GTGT GTGC GTGC GCGC GTGC GT-- GTGT GTGC GTGC GT--
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * * * *
30872 GTGC GTGT GTGT GTGC GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
30920 GTGT GTGT GTGC GTGT GTGC --GC GTGC GTGC GTGT GTGT GTGT GGGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * *
30966 GCGC GTGC GTGC GTGT GTGC GTGT GTGC GCGT GTGT GTGC GTGT GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * *
31014 GTGT GTGT GTGT GTGT GTGT GTGC --GC GTGC GTGT GTGT GTGTC GGTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTG-C -GTGC
* * * * * * * * * * * * *
31062 GCGT GTGC GGGT GTGC GCGT GTGT GTGT GTGT GTGT GTGT GTGT GCGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * *
31110 GCGC GTGC GT-- GTGT GTGT GTGG GTGC GTGC GTGC GT-- GTGT GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * * * *
31154 GTGT GTGT GTGT GTGT GTGT GCGC GTGC GT-- GTGT GTGT GTGT GTGG
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
31200 GTGC GCGT GTGC GT-- GTGC GGGT GTGC GT-- GTGC GCGC GCGT GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * * * * * *
31244 GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
31292 GTGT GTGT GTGT GTGT GTGC GTGC GTGC GTGT GCGC GTGC --GC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
31338 GTGC --GC GTGT GTGT GTG- GTGC GCGT GTGT GTGC GTGC GTGC GCGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * *
31383 GCGC GCGC GCGT GTGT GTGC GTGC GT-- GTGT GTGT GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
31429 GTGT GTGT GTGC GGGT GTGC GTGC GTGT GTGT GTGT GTGT GTGC GT--
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
31475 GTGC GGGT GTGC GTGC --GC GTGC GCGT GCGC GTGC GGGT GCGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
31521 GCGC GTGT GTGT GTGC GT-- GTGC GTGT GCGC GAGC GTGT GCGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
31567 --GC GTGC GT-- GTGG GTACGC GTGT GTGT GTGC GT-- GTGT GTGT GTGT
1 GTGC GTGC GTGC GTGC GT--GC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
*
31611 GTGC GTGC GTGC GTGC GTGC ATGC GTGC --GC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
31657 GTGC GTGC GT-- GTGT GTGC GTGT GTGT GTGT GTGT GTGT GTGG GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
** * * * * * * * * * * *
31703 GTTT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGG
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
31751 GTGC --GC GTGC GCGC GTGTCC GTGC GT-- GTGT GTGT GTGC GTGT GCGT
1 GTGC GTGC GTGC GTGC GTG--C GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * **
31797 GTGC GTGC --GC GTGC GT-- GTGC AG-GT GTGC ATGT GCGC GTGC ACGC
1 GTGC GTGC GTGC GTGC GTGC GTGC -GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * * * *
31841 GCGC GTGT GTGT GTGT GTGT GTGT GTGG GTGC GTGT GTGT GCGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
31889 --GC GTGC GTGC GTGT GTGT GGGG GTGC --GC GTGC GCGC GT-- GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * *
31931 GTGC GTGC GCGC GTGT GTGC TGTGT GTGC GTGT GTGC --GC GTGC GTGT
1 GTGC GTGC GTGC GTGC GTGC -GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
31978 GTGT GTGTG GTGC GCGT GTGC GT-- GTGC GGTGT GTGT GTG- GTGC GTGC
1 GTGC GTG-C GTGC GTGC GTGC GTGC GTGC -GTGC GTGC GTGC GTGC GTGC
* * * * * * * * *
32025 --GC GAGC GCGC GTGT GTGG GTGC --GC GTGC GCGC GTGT GCGT GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
32069 GTGC GTGC GTGC GTGT GTGT GTGT GTGT GCGG GTGC GGGT GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * *
32117 GTGT GTGT GT-C -TGT GTGT GTGT GTGC GT-- GTGC GGGT GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * * * * * *
32161 GTGT GCGT GTGC GTGT GCGC GTGC GCGT GCGC GTGC GTGT GGGT GCGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
32209 GTGC GCGC GT-- GTGT GTGC GTGT GTGT TTGT GTGT GCGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * *
32255 GCGC GTGC --GC GTGC GT-- GTGG GTGC GTGT GTGT GCGT GTGT GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * *
32299 GTGT GTGC GTGC GTGC GTGC GTGC GTGC GT-- GTGC GTGT GTGT GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
32345 GTGT GTGT GTGC CTGT GTGT GTGC GTGT GCGT GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * * *
32393 GT-- GTGT GTGT GTGT GTGT GTGT GTGC CTGT GTGT GTGC GTGT GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * ** * * *
32439 GTGT GTGC GTGC GTGT GTTTT GTGT GCGC GTGC GTGC GCGC GTGC --GC
1 GTGC GTGC GTGC GTGC G-TGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * *
32486 GTGC GT-- GTGG GTGC GTGT GTGC GT-- GTGT GTGC GTGT GTGC GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * *
32530 GTGC GTGC GTGC GTGC GTGC GTGC GTGT GCGT GTGT GTGT GTGT GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
32578 GTGC CTGT GTGT GTGT GTGC GTGT GTGC GTGC GTGC GTGC GT-- GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * * *
32624 GTGT GTGT GTGT GTGC CTGT GTGT GTGC GTGT GT-C GTGT GTGC GCGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * *
32671 GTGC GT-- GTGC GTGC GTGT GTGT GTG- GTGC GTGTCC GTGC TGTGT GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTG--C GTGC -GTGC GTGC
* * * * * * * *
32719 -TGC GTGT GTGT GTGC GCGC GAGT GTGT GTGG GTGC ATGTCC GTGC GT--
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC --GTGC GTGC GTGC
* * * * *
32766 GTGT GTGC GTGC GT-- GTGT GTGT GTGC GTGC GTGC GT-- GTGT GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * * *
32810 GTGC GTGC GTGC GTGT GTGT GTGT GTGT GCGT GTGC GTGT GCGT GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
32858 GGGT GTGC GTGT GTGC GTGC GTGT GT-C TGTGT GTGT GTGC GT-- GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC -GTGC GTGC GTGC GTGC GTGC
* * * * * * * * *
32904 GTGT GCGT GTGC GTTTGC GTGT GCGT GTGC GTGC GTGC GGGT GTGC GTGT
1 GTGC GTGC GTGC G--TGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
32954 GCGC GTGC --GC GTGC GTGT GTGT GTGT GGGT GCGC GTGC GCGC GTGTC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTG-C
* * * * *
33001 TGTGC GTGC GCGC GCGT GTGT GTGC GTGT GTGTAC GTTGC GT-- GTGC
1 -GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTG--C G-TGC GTGC GTGC
* * * * * *
33047 GTGT GTGC GTGC GTGC GGGT GTGC GT-- GTGC GTGC GTGT GTGT GTGG
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * *
33093 GGGT GCGC GTGC GCGC GTGTC TGTGC GTGC GCGC GCGC GTGT GTGTC TGTGTC
1 GTGC GTGC GTGC GTGC GTG-C -GTGC GTGC GTGC GTGC GTGC GTG-C -GTG-C
* * * * * * * *
33146 TGTGT GTGT GTGC GCGT GTGC GTGT GTGC --GC GTGC GCGT GTGC GTGT
1 -GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
33193 GTGT GTGC GTGT GCGC GTGC ATGC GTGC GTGC GTGT GTGT GCGC GCGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * * *
33241 GTGT GCGC GCGC GTGT GCGC GTGT GTGTG GTGC --GC GTGT GTGC GCGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTG-C GTGC GTGC GTGC GTGC GTGC
* * * * * *
33288 GCGT GTGT GTGC TGTGC --GC GTGT GTGC GT-- GTGT GTGC GTGT GTGC
1 GTGC GTGC GTGC -GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
33333 GTGT GCGC GTGC GTGC GCGC GCGC GT-- GTGC GTGT GTGC GTGT GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * *
33379 GTGC --GC GTGC GTGT GTGC GTG- TTGC GCGT GTGC GTGC GCGT GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * *
33424 GTGT GTGC GTGC GCGC GTGC --GC GTGT GTGC GT-- GTGC GCGC GTGT
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * * * * * *
33468 GTGT GCGC GGGT GTGC G-G- GTGC GTGT GCGT GTGC GCGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
33514 GTG
1 GTG
33517 TGTGTGTTCA
Statistics
Matches: 2097, Mismatches: 472, Indels: 320
0.73 0.16 0.11
Matches are distributed among these distances:
2 120 0.06
3 19 0.01
4 1889 0.90
5 30 0.01
6 37 0.02
7 2 0.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (4 bp):
GTGC
Found at i:83764 original size:243 final size:241
Alignment explanation
Indices: 83301--84256 Score: 1001
Period size: 243 Copynumber: 4.0 Consensus size: 241
83291 TAGAAATAGT
* * * * *** *
83301 TTACTAGGTAAGGAACTTTTGAAATCGTTTTCTTACTTTTTAAAA-ATTTCAATTTTCATAAAAG
1 TTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAGAAACCAATTTTCAGAAAAG
*** * *
83365 ATTTAAATAAGAAACTTTGGAAATTGTTTTCTCATCTTTCGAAAAACATGT-AAAAGCATCT-TG
66 ATTTAAATAAGAAACTTTGGAAATCACTTTCTCATTTTTCGAAAAACATGTGAAAA-TAT-TATG
* * * * *** * * * * *
83428 CTCAAAAGTCTTATAGATTGCATGAAGGACTTATCATCTTTCTCTAAAGACTGACAGATGACTCG
129 CCCAAAGGTCTTATGGATGGCCCAAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCA
* * *
83493 AAGGATTTAATCATCATGCTCGAAAGACTTATTGATGGCCCGAATTAC
194 AAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAATGAC
* * * * *
83541 ATACCAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTTAAAAGAAACCAATTTTAAAAAAAA
1 TTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAGAAACCAATTTT-CAGAAAA
* * * * *
83606 TATTTAAATTAGAAACTTTGGAAATCGCTTTCTCATTTTTTTGAAAAACATATGAAAATATTATG
65 GATTTAAATAAGAAACTTTGGAAATCACTTTCTCA-TTTTTCGAAAAACATGTGAAAATATTATG
**
83671 CCTGAAGGTCTTATGGATGGCCCAAAGGACTTATCATCTTGCTC-AAATGACTTACAGATGACCC
129 CCCAAAGGTCTTATGGATGGCCCAAAGGACTTATCATCTTGCTCGAAA-GACTTACAGATGACCC
* * * * ** * *
83735 AAAGCATTTACGAATCATACTTAAAAGACTTACTGATGACACGAATGAC
193 AAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAATGAC
* **
83784 TTGCTAAGTAAGAAACTTTGGAAATTTTTTTCTTACTTTTCAAAAGAAACCAATTTTCAGAAAAG
1 TTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAGAAACCAATTTTCAGAAAAG
* * ** *
83849 GTTTAAATAAGAAACTTTGGAAATCATTTTCTCA-TTTTCGAAAAACATGTGAATACATCCTA-A
66 ATTTAAATAAGAAACTTTGGAAATCACTTTCTCATTTTTCGAAAAACATGTGAA-A-ATATTATG
* * * *
83912 CCCAAAGGTCTTATGGATGGTCCAAAGGACTTATCATCTTGCTCGAAAGACTTACGGATGACTCG
129 CCCAAAGGTCTTATGGATGGCCCAAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCA
* * * * *
83977 AAGGATTTAAGTATAATGCTCGAAAGACTTACTGAT-GTCTGAAGGAC
194 AAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAATGAC
** *
84024 TTACTAAGTAAGAAACTTTGGAAATTATTTTCCTACTTTTCAAAAGAAACCAATTTTCAGAAAAT
1 TTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAGAAACCAATTTTCAGAAAA-
** * * * **
84089 G-TTTAAATGTGAAACTTTGGAAATTACTTTCTCATTTTTTTTGAAAAATATGTGAAAATATCCT
65 GATTTAAATAAGAAACTTTGGAAATCACTTTCTCA--TTTTTCGAAAAACATGTGAAAATATTAT
* * * **
84153 GCCCGAAGGTCTTATGGATGGCCCGAATGACTTATCATCTTGCTCGAAAGACTTATGGATGACCC
128 GCCCAAAGGTCTTATGGATGGCCCAAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCC
* * * * *
84218 AGATGAATTAAGCATCATGCTTGAAAGACTTATTGATGG
193 AAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGG
84257 TCTTATATAT
Statistics
Matches: 595, Mismatches: 106, Indels: 27
0.82 0.15 0.04
Matches are distributed among these distances:
240 153 0.26
241 96 0.16
242 170 0.29
243 172 0.29
244 4 0.01
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (241 bp):
TTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAGAAACCAATTTTCAGAAAAG
ATTTAAATAAGAAACTTTGGAAATCACTTTCTCATTTTTCGAAAAACATGTGAAAATATTATGCC
CAAAGGTCTTATGGATGGCCCAAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAA
GGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAATGAC
Found at i:84187 original size:483 final size:482
Alignment explanation
Indices: 83308--84218 Score: 1235
Period size: 483 Copynumber: 1.9 Consensus size: 482
83298 AGTTTACTAG
* * * *** *
83308 GTAAGGAACTTTTGAAATCGTTTTCTTACTTTTTAAAAATTTCAATTTTCATAAAAGATTTAAAT
1 GTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAAAACCAATTTTCAGAAAAGATTTAAAT
** ** *
83373 AAGAAACTTTGGAAATTGTTTTCTCATCTTTCGAAAAACATGTAAAAGCATCTTGCTCAAAAGTC
66 AAGAAACTTTGGAAATCATTTTCTCATCTTTCGAAAAACATGTAAAAGCATCTAACCCAAAAGTC
* * *
83438 TTATAGATTGCATGAAGGACTTATCATCTTTCTCTAAAGACTGACAGATGACTCGAAGGATTTAA
131 TTATAGATTCCA-GAAGGACTTATCATCTTGCTCGAAAGACTGACAGATGACTCGAAGGATTTAA
* * ** *
83503 TCATCATGCTCGAAAGACTTATTGATGGCCCGAATTACATACCAAGTAAGAAACTTTGGAAATCG
195 TCATAATGCTCGAAAGACTTACTGATGGCCCGAAGGACATACCAAGTAAGAAACTTTGGAAATCA
* * *
83568 TTTTCTTACTTTTTAAAAGAAACCAATTTTAAAAAAAATATTTAAATTAGAAACTTTGGAAATCG
260 TTTTCCTACTTTTCAAAAGAAACCAATTTTAAAAAAAATATTTAAATTAGAAACTTTGGAAATCA
* *
83633 CTTTCTCATTTTTTTGAAAAACATATGAAAATATTATGCCTGAAGGTCTTATGGATGGCCCAAAG
325 CTTTCTCATTTTTTTGAAAAACATATGAAAATATCATGCCCGAAGGTCTTATGGATGGCCCAAAG
83698 GACTTATCATCTTGCTC-AAATGACTTACAGATGACCCAAAGCATTTACGAATCATACTTAAAAG
390 GACTTATCATCTTGCTCGAAA-GACTTACAGATGACCCAAAGCATTTACGAATCATACTTAAAAG
83762 ACTTACTGATGACACGAATGACTTGCTAA
454 ACTTACTGATGACACGAATGACTTGCTAA
** *
83791 GTAAGAAACTTTGGAAATTTTTTTCTTACTTTTCAAAAGAAACCAATTTTCAGAAAAGGTTTAAA
1 GTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAA-AAACCAATTTTCAGAAAAGATTTAAA
* *
83856 TAAGAAACTTTGGAAATCATTTTCTCAT-TTTCGAAAAACATGTGAATA-CATCCTAACCCAAAG
65 TAAGAAACTTTGGAAATCATTTTCTCATCTTTCGAAAAACATGT-AAAAGCAT-CTAACCCAAAA
* * *
83919 GTCTTATGGATGGTCCA-AAGGACTTATCATCTTGCTCGAAAGACTTACGGATGACTCGAAGGAT
128 GTCTTATAGAT--TCCAGAAGGACTTATCATCTTGCTCGAAAGACTGACAGATGACTCGAAGGAT
* * * *
83983 TTAAGT-ATAATGCTCGAAAGACTTACTGAT-GTCTGAAGGACTTACTAAGTAAGAAACTTTGGA
191 TTAA-TCATAATGCTCGAAAGACTTACTGATGGCCCGAAGGACATACCAAGTAAGAAACTTTGGA
* * * *
84046 AATTATTTTCCTACTTTTCAAAAGAAACCAATTTT-CAGAAAATGTTTAAATGT-GAAACTTTGG
255 AATCATTTTCCTACTTTTCAAAAGAAACCAATTTTAAAAAAAATATTTAAAT-TAGAAACTTTGG
* * * *
84109 AAATTACTTTCTCATTTTTTTTGAAAAATATGTGAAAATATCCTGCCCGAAGGTCTTATGGATGG
319 AAATCACTTTCTCA-TTTTTTTGAAAAACATATGAAAATATCATGCCCGAAGGTCTTATGGATGG
* * **
84174 CCCGAATGACTTATCATCTTGCTCGAAAGACTTATGGATGACCCA
383 CCCAAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCA
84219 GATGAATTAA
Statistics
Matches: 370, Mismatches: 49, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
482 35 0.09
483 192 0.52
484 139 0.38
485 1 0.00
486 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (482 bp):
GTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAAAACCAATTTTCAGAAAAGATTTAAAT
AAGAAACTTTGGAAATCATTTTCTCATCTTTCGAAAAACATGTAAAAGCATCTAACCCAAAAGTC
TTATAGATTCCAGAAGGACTTATCATCTTGCTCGAAAGACTGACAGATGACTCGAAGGATTTAAT
CATAATGCTCGAAAGACTTACTGATGGCCCGAAGGACATACCAAGTAAGAAACTTTGGAAATCAT
TTTCCTACTTTTCAAAAGAAACCAATTTTAAAAAAAATATTTAAATTAGAAACTTTGGAAATCAC
TTTCTCATTTTTTTGAAAAACATATGAAAATATCATGCCCGAAGGTCTTATGGATGGCCCAAAGG
ACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGCATTTACGAATCATACTTAAAAGAC
TTACTGATGACACGAATGACTTGCTAA
Found at i:84249 original size:42 final size:41
Alignment explanation
Indices: 84163--84255 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 41
84153 GCCCGAAGGT
* * * *
84163 CTTATGGATGGCCCGAATGACTTATCATCTTGCTCGAAAGA
1 CTTATGGATGACCCGAATGAATTAGCATCATGCTCGAAAGA
*
84204 CTTATGGATGACCC-AGATGAATTAAGCATCATGCTTGAAAGA
1 CTTATGGATGACCCGA-ATGAATT-AGCATCATGCTCGAAAGA
*
84246 CTTATTGATG
1 CTTATGGATG
84256 GTCTTATATA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
40 1 0.02
41 19 0.43
42 24 0.55
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (41 bp):
CTTATGGATGACCCGAATGAATTAGCATCATGCTCGAAAGA
Found at i:84273 original size:4 final size:4
Alignment explanation
Indices: 84264--84878 Score: 988
Period size: 4 Copynumber: 158.0 Consensus size: 4
84254 TGGTCTTATA
*
84264 TATG TATG TATG TATA TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
84312 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
84360 TATG --TG TATG TATG --TG TATG TAT- TATG GATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
84403 TATG TATG TATG TATG --TG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
84449 TATG TTATG TAATG TATA TATG TATG TATG TATG TA-- TATG TATG TA-G
1 TATG -TATG T-ATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
84496 TA-G TATG TATG TATG TATAG TATG TATG TATG TATG TATG TGA-G TATG
1 TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG T-ATG TATG
84544 TATG TATG T-TG TATG TA-G TATG TATG TATG TATG --TG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
84588 TATG TATG TATG TATG TATG TATG TATG TATG TATGG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT-G TATG TATG TATG
84637 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
84685 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
84733 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG --TG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
84779 TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TA-G TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
84825 TATG TATG TATG TATG TATG TATG TATGG TATG TATG TA-- TATG TA-G
1 TATG TATG TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG
84871 TATG TATG
1 TATG TATG
Statistics
Matches: 577, Mismatches: 6, Indels: 56
0.90 0.01 0.09
Matches are distributed among these distances:
2 14 0.02
3 25 0.04
4 517 0.90
5 21 0.04
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
TATG
Done.