Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002320.1 Hibiscus syriacus cultivar Beakdansim tig00004723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69022

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
824--868
21
2.1
21
83
0
54
20
20
20
40
1.92
874--934
20
3.0
20
95
0
113
37
26
16
19
1.93
860--956
40
2.4
39
80
11
124
39
25
17
17
1.91
983--1066
20
4.2
20
79
8
82
33
21
10
34
1.88
1229--1266
16
2.5
15
88
12
60
28
2
0
68
1.03
2005--2058
24
2.2
24
93
0
90
20
18
20
40
1.91
2233--2260
12
2.3
12
100
0
56
71
0
28
0
0.86
4327--4356
12
2.5
12
94
0
51
53
23
3
20
1.60
5099--5146
25
1.9
25
91
0
78
22
10
22
43
1.84
5532--5568
18
2.1
18
89
0
56
32
5
10
51
1.60
5513--5572
24
2.5
23
78
7
75
36
6
11
45
1.67
6785--6858
29
2.6
29
93
0
130
27
17
25
29
1.97
6876--6980
20
5.2
20
84
0
129
20
19
21
38
1.94
7035--7189
64
2.4
66
85
5
215
52
18
1
27
1.53
8526--8596
21
3.4
21
76
3
72
21
21
35
22
1.96
8526--8648
42
2.9
42
84
4
151
23
17
35
22
1.95
8546--8644
21
4.7
21
75
3
92
24
17
34
24
1.96
8898--8948
21
2.4
21
87
6
68
37
27
13
21
1.91
9024--9073
21
2.4
21
82
0
64
32
32
14
22
1.93
10795--10832
20
1.9
20
88
0
58
18
13
18
50
1.78
11153--11233
22
3.8
22
86
3
103
24
7
40
27
1.81
11327--11375
25
1.9
26
83
4
64
36
10
18
34
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11344--11381
20
2.0
20
84
5
51
44
10
15
28
1.80
11407--11456
20
2.5
20
90
0
82
24
18
22
36
1.95
14588--14620
10
3.3
10
95
0
57
12
3
18
66
1.36
14807--14866
23
2.6
23
86
0
93
13
8
16
61
1.55
15970--16094
16
7.9
16
74
7
76
52
27
11
9
1.68
16024--16100
30
2.5
32
80
8
95
54
28
10
6
1.59
15982--16100
62
1.9
63
80
3
141
52
26
10
10
1.66
26499--26542
18
2.4
18
80
0
52
25
0
25
50
1.50
28959--28999
22
1.9
22
90
5
66
48
17
9
24
1.76
29046--29118
19
3.7
19
79
5
65
31
16
23
28
1.96
35319--35384
33
2.0
34
93
3
116
28
19
24
27
1.99
49911--50069
82
2.0
80
90
5
248
42
10
5
41
1.61
51849--51905
21
2.7
21
97
0
105
24
21
24
29
1.99
51926--51990
21
3.1
21
95
0
112
23
26
21
29
1.99
59984--60064
21
3.8
21
80
6
81
25
32
24
17
1.97
59984--60044
23
2.8
22
85
7
79
24
32
24
18
1.97
62852--62877
11
2.4
11
100
0
52
57
7
26
7
1.54
65234--65383
56
2.7
55
77
10
153
40
12
6
40
1.68
65234--65390
55
2.8
56
75
12
153
40
11
7
40
1.70
66927--67162
73
3.1
77
86
10
322
45
14
0
39
1.51

Tables:   1

The End!