genome.fa.s2321.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002321.1 Hibiscus syriacus cultivar Beakdansim tig00004728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80965

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6385--6446	30	2.1	30	93	0	106	62	6	9	20	1.47
6653--6687	9	3.7	9	85	14	52	51	8	2	37	1.47
6754--6837	31	2.7	32	79	5	109	48	7	4	39	1.52
6779--6972	11	17.9	11	67	24	76	51	7	3	37	1.47
6852--6944	13	6.9	13	79	7	96	52	6	2	38	1.39
6839--6925	26	3.5	26	74	10	83	50	4	3	41	1.40
6912--6971	9	6.7	9	78	14	70	55	10	1	33	1.43
6910--6997	29	3.3	27	79	14	85	53	6	1	38	1.35
6966--6998	2	17.5	2	87	12	52	48	0	0	51	1.00
6860--6998	13	10.9	13	68	21	50	52	5	2	39	1.37
6986--7032	22	2.0	22	88	8	67	36	2	0	61	1.08
7271--7328	28	2.1	28	100	0	116	6	24	29	39	1.81
17396--17972	180	3.2	182	82	4	666	39	8	11	40	1.72
18193--18285	20	4.7	20	85	5	100	34	19	22	23	1.96
18273--18423	21	7.4	21	71	11	134	35	26	18	19	1.95
18271--18423	40	3.8	40	95	3	279	35	26	18	19	1.95
18270--18423	82	1.9	82	98	0	299	35	25	18	20	1.95
18407--18439	17	1.9	17	93	0	57	30	30	15	24	1.95
18854--18892	22	1.9	20	85	15	53	69	2	5	23	1.21
19767--19805	2	19.5	2	100	0	78	51	0	0	48	1.00
20927--20990	12	5.4	11	78	15	65	32	0	3	64	1.10
20924--20986	8	7.1	9	77	12	60	34	0	3	61	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21638--21683	23	2.0	23	82	0	56	50	6	8	34	1.59
25692--25758	3	22.0	3	81	6	73	58	0	1	40	1.07
26078--27214	116	9.9	116	93	2	1745	30	19	11	37	1.88
26078--27216	342	3.3	344	92	2	1755	30	19	12	37	1.88
27899--28912	94	10.9	93	88	4	1453	34	19	15	31	1.92
27909--28912	187	5.4	184	89	4	1425	34	19	15	31	1.92
37241--37272	15	2.1	15	94	0	55	46	6	18	28	1.73
41362--41430	22	3.2	21	70	24	54	63	4	2	28	1.28
42734--42814	3	27.0	3	85	5	101	59	0	1	39	1.05
45545--47016	304	4.8	305	88	4	2149	41	12	16	30	1.84
45544--47016	153	9.7	152	88	4	2111	41	12	16	30	1.84
47321--47348	8	3.5	8	100	0	56	35	0	14	50	1.43
51495--52256	155	4.9	155	92	4	1284	41	12	15	30	1.84
51496--52256	307	2.4	314	93	3	1306	41	12	15	30	1.84
53057--53150	24	3.9	23	76	5	89	47	17	14	20	1.82
53059--53150	48	1.9	48	82	4	114	47	17	14	20	1.82
53057--53113	12	4.8	12	74	8	53	49	17	14	19	1.80
63375--63475	42	2.4	41	78	3	112	26	22	21	28	1.99
63592--63664	20	3.5	20	68	14	58	23	21	23	31	1.98
63593--63684	42	2.2	42	92	0	148	26	20	21	31	1.98
63648--63864	80	2.7	80	89	2	328	30	17	21	30	1.96
64281--64530	53	4.8	53	82	2	247	30	20	25	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69749--71237	152	9.8	152	90	3	2241	41	11	15	30	1.83
69749--71236	460	3.3	459	90	3	2297	41	11	15	30	1.83
79720--79778	21	2.8	21	92	2	91	30	18	11	38	1.87

Tables:   1

The End!