Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002323.1 Hibiscus syriacus cultivar Beakdansim tig00004738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155256

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5582--5688
55
1.9
55
81
3
126
44
18
3
32
1.68
12033--12077
22
2.1
21
84
12
56
48
20
6
24
1.73
19455--19506
19
2.7
19
72
16
54
36
11
3
48
1.58
29862--29896
17
2.2
16
90
10
54
57
8
11
22
1.61
34996--35053
21
2.7
22
72
5
64
20
25
18
34
1.96
35042--35113
20
3.6
20
92
3
110
36
18
20
25
1.95
35083--35209
20
6.3
20
97
0
218
22
28
23
25
1.99
35063--35193
60
2.2
60
84
2
165
25
25
23
25
2.00
36028--36081
24
2.2
24
90
0
81
20
20
20
38
1.93
36271--36307
14
2.5
15
86
8
58
54
21
18
5
1.64
38332--38374
12
3.6
12
87
0
59
53
25
4
16
1.62
38334--38367
6
5.7
6
85
0
50
58
20
2
17
1.51
38434--38703
140
1.9
140
97
0
513
29
13
14
42
1.84
38681--38954
20
14.1
20
82
6
303
31
21
19
27
1.97
38949--39004
20
2.8
20
80
0
67
10
16
25
48
1.78
39105--39166
14
4.3
14
77
6
61
46
14
0
38
1.45
40553--40661
42
2.6
41
76
9
105
24
18
35
21
1.95
41158--41233
20
3.8
20
92
0
116
38
25
17
19
1.93
43217--43272
20
2.8
20
91
0
85
50
23
16
10
1.76
43240--43312
20
3.7
20
94
0
119
35
26
19
19
1.95
43902--44008
20
5.3
20
87
0
133
21
23
27
28
1.99
49530--49562
14
2.4
14
100
0
66
30
33
6
30
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60485--60535
24
2.1
24
85
0
66
45
17
15
21
1.86
65671--65758
41
2.1
41
100
0
176
40
23
10
25
1.86
83958--84041
43
2.0
43
87
0
123
28
10
23
36
1.89
87302--87338
2
18.5
2
100
0
74
51
0
0
48
1.00
87438--87522
35
2.5
35
92
1
145
48
28
4
18
1.68
87550--87625
20
3.8
20
98
0
143
25
27
10
36
1.89
91562--91630
18
3.6
18
80
14
84
24
31
23
20
1.98
93117--93273
64
2.5
62
80
10
165
29
17
19
33
1.95
98003--98159
64
2.5
62
81
10
165
29
17
19
33
1.95
103793--103825
15
2.1
17
88
11
52
51
3
0
45
1.16
104554--104588
8
4.4
8
100
0
70
34
0
11
54
1.37
105076--105177
19
5.2
21
67
22
69
51
1
0
46
1.12
105118--105171
18
3.1
18
84
12
69
57
1
0
40
1.09
105117--105171
10
5.7
10
74
21
55
58
1
0
40
1.09
105244--105281
20
2.0
19
90
10
60
50
10
21
18
1.76
106000--106046
24
2.0
24
86
0
67
36
25
2
36
1.68
107767--107806
3
13.3
3
94
0
71
62
0
35
2
1.09
108186--108216
16
1.9
16
93
0
53
74
12
6
6
1.21
109882--109957
30
2.5
30
80
8
82
57
10
6
25
1.56
111619--111666
22
2.2
22
96
0
87
22
16
25
35
1.95
113756--113810
18
3.2
17
73
17
51
45
3
0
50
1.19
113908--113938
6
5.2
6
100
0
62
0
16
0
83
0.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114542--114615
37
2.0
37
85
12
100
47
0
4
48
1.20
115976--116013
15
2.5
15
86
0
58
36
10
15
36
1.82
116022--116055
14
2.4
14
90
0
50
38
8
14
38
1.78
116346--116408
23
2.7
23
80
5
63
46
1
1
50
1.20
116384--116436
20
2.7
20
75
16
56
49
1
0
49
1.12
116400--116487
31
2.7
33
79
12
92
50
2
0
47
1.13
116393--116546
31
5.4
28
68
25
85
49
1
0
48
1.14
116509--116552
22
2.0
23
86
4
63
54
0
0
45
0.99
118261--118306
20
2.2
21
78
21
53
50
15
0
34
1.44
123682--123768
45
1.9
45
81
4
104
20
24
25
29
1.99
129726--129801
36
2.1
36
85
4
100
28
21
15
34
1.94
133066--133121
25
2.2
26
81
6
62
60
0
3
35
1.14
133220--133244
7
3.6
7
100
0
50
40
0
12
48
1.40
137824--137907
42
2.0
41
95
2
150
36
2
16
44
1.61
140286--140328
3
14.7
3
86
13
63
32
0
0
67
0.91
142530--142572
19
2.3
19
87
0
59
27
6
2
62
1.33
145850--145881
15
2.1
15
94
0
55
28
18
6
46
1.73
153159--153244
10
8.1
10
82
14
86
83
3
12
0
0.76
153157--153244
16
5.5
15
80
11
95
82
3
13
0
0.78
154140--154910
91
8.4
93
93
3
1291
27
18
20
33
1.96
154140--154910
272
2.8
276
92
3
1299
27
18
20
33
1.96

Tables:   1

The End!