Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002324.1 Hibiscus syriacus cultivar Beakdansim tig00004740_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84601

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6502--6617
29
4.0
29
76
6
92
38
15
25
20
1.92
6520--6620
29
3.6
29
77
4
98
41
15
24
17
1.89
8119--8762
54
11.9
54
90
1
923
33
18
17
30
1.94
12774--12812
15
2.6
15
100
0
78
25
15
28
30
1.96
15305--15865
54
10.5
54
85
2
758
33
17
19
29
1.94
15324--15865
159
3.4
161
87
4
778
33
17
19
29
1.94
15308--15865
212
2.6
212
88
2
836
33
17
18
29
1.94
16281--16330
21
2.4
21
86
3
66
32
28
12
28
1.92
22056--22092
2
18.5
2
100
0
74
48
0
0
51
1.00
23438--23498
23
2.7
23
85
7
72
54
3
0
42
1.17
23997--24100
48
2.2
48
98
0
199
48
0
27
24
1.52
27168--27224
20
2.9
20
94
2
98
28
17
24
29
1.97
32559--32622
26
2.4
27
76
7
69
71
1
6
20
1.15
33892--33935
3
14.3
3
95
4
79
68
0
0
31
0.90
33963--34187
67
3.3
67
76
13
222
44
7
3
45
1.48
34004--34075
33
2.2
33
82
12
85
44
4
5
45
1.46
34042--34124
41
2.1
38
88
6
121
42
6
3
48
1.45
34003--34205
35
5.7
35
74
18
152
44
5
3
45
1.46
33954--34167
73
3.1
68
76
14
211
45
7
3
43
1.48
34827--35007
84
2.1
86
88
2
267
23
22
25
28
1.99
35017--35085
29
2.5
28
92
4
113
39
11
17
31
1.85
35073--35269
36
5.4
36
81
8
236
39
13
19
27
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35290--36269
164
6.0
164
94
0
1548
24
21
24
30
1.99
39296--39340
19
2.4
19
88
3
65
66
8
11
13
1.44
41288--41341
24
2.2
25
77
9
58
68
7
7
16
1.36
42390--42439
2
25.0
2
100
0
100
50
0
0
50
1.00
45945--46031
42
2.1
42
100
0
174
49
16
18
16
1.80
56402--56440
17
2.4
17
95
4
71
51
5
0
43
1.24
57605--57645
2
20.5
2
100
0
82
51
0
0
48
1.00
60523--60564
15
2.9
15
89
3
68
47
35
0
16
1.47
60522--60554
8
4.2
8
84
7
50
45
39
0
15
1.46
76545--76595
22
2.3
22
96
0
93
15
37
17
29
1.91
78595--78627
15
2.2
15
94
0
57
6
24
15
54
1.63
79361--79400
17
2.3
18
86
4
55
40
7
7
45
1.61
79443--79467
13
1.9
13
100
0
50
56
32
0
12
1.36

Tables:   1

The End!