genome.fa.s2325.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002325.1 Hibiscus syriacus cultivar Beakdansim tig00004741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69230

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
754--833	37	2.2	35	82	13	90	31	1	30	37	1.66
3862--3924	26	2.6	23	72	13	63	17	14	9	58	1.61
6323--6423	8	12.2	8	77	18	93	82	0	17	0	0.68
6330--6416	10	8.7	10	82	12	108	81	0	18	0	0.69
6325--6428	5	21.6	5	69	24	64	80	0	18	0	0.76
7952--8009	28	2.1	28	93	6	100	24	24	29	22	1.99
9354--9422	23	3.3	23	66	29	71	31	11	14	42	1.82
9635--9703	23	3.3	23	61	23	60	30	11	15	42	1.83
9315--9936	120	5.2	120	89	1	872	30	16	12	40	1.85
9701--9765	20	3.2	20	65	16	53	26	16	10	46	1.80
9315--9870	40	13.9	40	94	1	871	30	16	12	41	1.84
9446--10005	40	14.2	38	87	4	250	29	17	13	39	1.87
9330--9968	80	8.1	78	86	4	345	30	16	12	40	1.86
10008--10122	36	3.2	36	77	4	106	26	20	15	37	1.92
10145--10252	28	3.8	28	89	7	148	30	14	16	37	1.89
10158--10240	13	6.2	13	69	21	55	30	10	16	42	1.83
10326--10371	24	1.9	24	86	0	65	23	17	19	39	1.92
10228--10467	120	2.0	122	88	3	360	31	17	12	37	1.88
10228--10451	61	3.7	61	92	1	362	31	17	12	38	1.88
10725--10788	20	3.2	20	65	12	51	40	10	23	25	1.87
10804--11283	136	3.6	136	93	1	790	33	17	22	26	1.96
11221--11513	117	2.6	111	83	8	353	39	13	21	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33166--33471	156	2.0	153	93	4	530	41	10	8	39	1.70
35353--35391	18	2.2	18	90	0	60	23	46	20	10	1.81
35398--35534	29	4.7	29	87	4	195	35	1	15	48	1.54
42319--42413	7	13.7	7	98	1	183	12	44	0	43	1.42
42970--43106	29	4.7	29	88	1	177	33	1	18	46	1.58
42970--43127	58	2.7	58	84	3	192	32	1	17	48	1.58
45407--45481	3	25.0	3	86	0	105	60	0	0	40	0.97
45811--46599	113	7.0	114	89	2	1121	28	18	14	38	1.90
45811--46572	224	3.4	226	92	1	1246	27	19	14	38	1.90
47391--47797	83	4.9	83	94	0	710	37	22	12	27	1.91
48949--49024	1	76.0	1	76	0	71	0	11	0	88	0.52
48952--49024	9	7.7	9	85	11	101	0	12	0	87	0.54
48950--49024	20	3.8	20	84	13	111	0	12	0	88	0.53
48948--49024	38	2.0	40	92	5	131	0	12	0	87	0.56
48948--49023	32	2.4	32	87	12	113	0	13	0	86	0.56
60279--60312	14	2.4	15	85	14	54	70	5	2	20	1.21
61620--61694	3	25.0	3	80	0	87	57	0	0	42	0.98
61622--61694	18	3.9	18	84	10	101	57	0	0	42	0.98
61619--61704	21	4.2	20	76	15	79	56	0	0	43	0.99
65605--65642	14	2.6	15	84	16	53	26	10	0	63	1.27

Tables:   1

The End!