genome.fa.s2326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002326.1 Hibiscus syriacus cultivar Beakdansim tig00004742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135691

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81--127	24	1.9	25	91	4	78	57	8	6	27	1.53
1931--2024	37	2.6	37	98	1	181	21	13	28	36	1.92
4577--4645	13	5.3	13	80	11	79	59	1	1	37	1.15
4564--4654	26	3.6	25	72	15	71	60	3	1	35	1.20
4572--4611	11	3.4	12	87	12	57	62	0	0	37	0.95
4577--4654	27	3.0	27	79	7	90	58	2	1	37	1.20
7742--7920	44	4.0	45	88	5	263	36	40	10	12	1.77
11637--11703	31	2.2	31	91	0	107	22	28	14	34	1.94
12146--12216	31	2.3	31	90	0	106	26	25	11	36	1.90
12157--12223	31	2.2	31	94	0	116	20	29	13	35	1.91
16804--16875	29	2.5	29	77	4	83	15	38	16	29	1.89
16796--16871	28	2.7	28	83	2	98	13	39	17	30	1.87
17285--17348	22	2.9	23	77	9	62	51	1	1	45	1.20
17914--18109	101	1.9	102	84	10	267	63	5	9	21	1.44
19132--19201	27	2.6	27	76	13	72	58	4	1	35	1.26
19305--19342	18	2.1	18	85	9	51	57	2	2	36	1.26
25021--25052	12	2.8	12	95	4	57	31	0	0	68	0.90
33229--33258	2	15.0	2	100	0	60	50	0	0	50	1.00
35270--35316	23	2.1	23	84	11	62	38	6	21	34	1.79
35842--35911	30	2.3	30	95	4	124	44	12	4	38	1.63
40390--40416	4	6.8	4	100	0	54	77	0	0	22	0.76
46388--46432	23	2.0	23	86	0	63	26	28	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46413--46714	149	2.0	149	98	0	577	37	19	15	27	1.92
47192--47342	67	2.3	67	89	2	223	17	24	28	29	1.97
53385--53429	23	2.0	23	86	0	63	26	28	24	20	1.99
53410--53711	149	2.0	149	98	0	577	37	19	15	27	1.92
54190--54340	66	2.2	68	89	3	225	17	23	29	29	1.97
57049--57091	21	2.0	21	90	0	68	32	27	23	16	1.96
57119--57156	20	1.9	20	88	0	58	23	34	31	10	1.89
57638--57958	103	3.1	103	95	0	588	26	13	23	36	1.91
57975--58037	23	2.7	23	81	13	76	20	23	26	28	1.99
64074--64116	21	2.0	21	90	0	68	32	27	23	16	1.96
64144--64181	20	1.9	20	88	0	58	23	34	31	10	1.89
64767--64807	21	2.0	20	85	4	55	26	12	19	41	1.87
64665--64985	103	3.1	103	94	0	570	26	13	23	37	1.91
65002--65063	22	2.7	23	82	9	83	20	27	27	24	1.99
65901--65961	17	3.8	17	74	12	65	77	3	14	4	1.07
65894--65960	25	2.6	25	84	11	75	77	2	14	4	1.05
68160--68463	149	2.0	149	96	0	563	27	15	20	36	1.92
68442--68486	23	2.0	23	86	0	63	20	24	28	26	1.99
74039--74076	20	1.9	20	84	10	51	2	34	0	63	1.09
75397--75441	23	2.0	23	86	0	63	20	24	28	26	1.99
76283--76378	36	2.6	36	82	8	113	29	20	15	34	1.94
76487--76639	65	2.3	66	88	4	231	28	17	13	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76787--76931	39	3.8	38	90	4	177	28	20	16	34	1.94
76909--76949	15	2.7	15	96	0	73	17	31	19	31	1.95
76874--76974	51	2.0	51	92	0	166	23	25	16	33	1.96
76942--77042	21	5.4	21	66	26	82	27	23	11	36	1.90
76873--76985	51	2.2	51	87	3	165	24	25	15	33	1.95
76963--76993	15	2.1	15	93	0	53	35	25	9	29	1.88
76924--77139	36	5.8	36	88	2	252	26	22	15	35	1.94
77468--77529	20	3.0	21	72	13	65	19	29	25	25	1.99
77375--77652	132	2.1	132	97	0	529	23	21	23	30	1.99
79869--79903	18	1.9	18	88	0	52	54	0	17	28	1.43
86330--86354	8	3.1	8	100	0	50	36	16	0	48	1.46
86340--86454	60	1.9	60	85	0	158	35	13	3	47	1.59
86343--86470	60	2.1	60	80	0	139	34	15	4	45	1.67
86619--86764	60	2.4	58	81	11	154	40	7	21	30	1.81
86619--86794	60	2.9	60	80	10	148	40	6	20	31	1.79
91786--91841	23	2.4	23	85	5	69	26	8	16	48	1.75
96405--96493	45	1.9	47	93	4	155	29	11	22	37	1.89
106195--106267	17	4.7	15	77	15	60	73	0	20	5	1.02
106219--106252	7	4.9	7	96	0	59	76	0	14	8	1.01
107592--108203	51	11.8	51	89	4	816	28	15	27	28	1.96
111573--111661	45	1.9	47	93	4	155	29	11	22	37	1.89
121737--121779	14	2.8	17	73	26	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121737--121781	16	2.9	16	78	21	60	48	0	0	51	1.00
121935--121970	18	2.0	18	89	10	56	61	0	0	38	0.96
122141--122173	16	2.1	17	88	11	52	72	0	9	18	1.10
127929--127982	20	2.7	19	75	8	63	33	31	18	16	1.93
128032--128303	20	13.5	20	77	6	237	37	24	18	19	1.93
128073--128303	40	5.7	40	89	2	295	38	24	18	19	1.93
128334--128382	19	2.7	17	81	9	53	28	24	14	32	1.94
129162--129215	24	2.2	24	90	0	81	20	16	20	42	1.89
131765--131850	19	4.7	19	75	16	92	43	20	22	13	1.87
131732--131848	33	3.3	34	79	8	110	40	22	23	14	1.90
131780--131807	14	2.0	14	100	0	56	42	21	21	14	1.88
131781--131814	14	2.4	14	90	0	50	44	20	23	11	1.84
131846--131923	19	4.3	19	80	12	92	14	15	24	46	1.83
131861--131955	33	2.8	33	90	1	136	12	18	22	46	1.83
131846--131955	19	6.3	17	75	18	77	13	18	22	45	1.84
135417--135548	19	7.1	19	78	11	130	45	17	22	14	1.84
135544--135584	19	2.2	19	90	0	64	7	19	26	46	1.76

Tables:   1

The End!