genome.fa.s2327.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002327.1 Hibiscus syriacus cultivar Beakdansim tig00004751_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188618

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310--344	17	2.1	18	89	10	56	20	5	5	68	1.31
9498--9563	12	5.6	12	78	10	73	28	46	12	12	1.77
12310--12382	33	2.3	32	83	4	85	53	4	4	38	1.39
13793--13832	20	2.0	20	90	9	64	55	2	0	42	1.13
17952--17986	6	5.8	6	100	0	70	48	0	17	34	1.47
20269--20302	2	17.5	2	87	6	52	0	0	47	52	1.00
20302--20345	2	22.0	2	100	0	88	50	0	0	50	1.00
20793--20860	25	2.7	25	82	8	68	30	5	5	57	1.46
21249--21315	29	2.3	29	82	2	73	55	10	7	26	1.60
21920--21998	34	2.4	33	85	8	99	37	0	1	60	1.05
22138--22191	17	3.2	17	72	0	54	31	0	3	64	1.11
23721--23768	21	2.3	21	85	0	60	25	39	12	22	1.89
23772--23865	21	4.5	21	90	5	120	18	34	26	21	1.96
24385--24478	28	3.2	28	78	14	107	54	4	1	40	1.27
24878--25635	128	5.9	128	94	0	1250	31	20	24	23	1.98
24878--25634	257	3.0	256	93	1	1277	31	20	24	23	1.98
24878--25635	385	2.0	384	92	1	1250	31	20	24	23	1.98
25706--25746	8	5.2	8	82	5	57	36	29	0	34	1.58
33640--33721	21	3.9	21	78	7	76	14	23	36	25	1.93
46808--46863	21	2.7	21	81	8	69	53	3	3	39	1.36
49135--49184	26	2.0	23	85	11	64	28	0	6	66	1.15
64138--64191	26	2.1	26	89	3	83	53	0	9	37	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77564--77606	15	2.6	17	82	7	54	41	4	20	32	1.73
81503--81629	59	2.2	59	83	8	152	35	4	24	35	1.77
82465--82538	37	2.0	36	84	7	96	50	1	1	47	1.18
83232--83265	17	1.9	17	88	5	50	41	8	0	50	1.34
83362--83435	24	3.0	23	72	18	60	55	1	0	43	1.08
83727--83786	21	2.9	21	87	5	77	51	1	1	45	1.21
90291--90316	13	2.0	13	100	0	52	23	23	15	38	1.92
92416--92449	16	2.1	17	88	5	52	44	8	5	41	1.60
93290--93315	13	2.0	13	100	0	52	7	53	30	7	1.57
94026--94070	11	4.0	11	88	8	56	60	0	0	40	0.97
94024--94070	3	16.3	3	82	8	62	59	0	0	40	0.97
94043--94099	21	2.7	22	76	7	57	49	0	0	50	1.00
94251--95040	76	10.4	76	97	0	1481	35	21	21	21	1.96
95701--95755	22	2.5	22	90	0	92	40	12	10	36	1.79
97194--97358	75	2.2	75	96	1	303	30	20	15	32	1.94
97222--97346	36	3.3	35	66	21	92	32	20	16	30	1.95
98380--98725	83	4.2	83	98	0	656	35	20	14	29	1.92
105628--105681	28	2.0	27	85	3	72	62	1	1	33	1.16
105607--105695	10	9.0	10	71	17	53	66	1	2	30	1.11
107107--107132	13	2.0	13	100	0	52	7	53	30	7	1.57
107845--107897	3	18.3	3	84	7	74	60	0	0	39	0.97
107845--107897	23	2.3	23	93	0	88	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107834--107895	23	2.8	20	77	17	70	58	0	0	41	0.98
107853--107921	12	5.8	12	80	10	70	53	0	0	46	1.00
108546--108570	3	8.3	3	100	0	50	68	0	0	32	0.90
109119--109186	21	3.3	21	89	2	93	39	14	22	23	1.91
109177--109314	41	3.4	41	75	2	134	35	23	15	24	1.94
109222--109288	20	3.3	20	82	0	89	28	28	13	29	1.94
109481--109524	22	2.0	22	95	0	79	20	45	15	18	1.85
109787--109845	20	3.0	20	82	0	55	16	16	20	45	1.85
109982--110036	25	2.2	24	78	15	58	20	9	18	52	1.71
111164--111211	18	2.7	18	93	0	87	27	45	12	14	1.81
111746--111817	20	3.7	19	81	5	81	40	23	22	13	1.90
111824--111887	19	3.6	19	70	20	66	14	20	20	45	1.85
111872--111926	20	2.8	20	91	2	85	16	27	23	32	1.96
113750--113788	14	2.8	14	84	0	51	35	0	17	46	1.49
113915--113968	14	3.5	14	73	22	54	48	18	20	12	1.81
113925--113961	19	1.9	19	88	0	56	51	13	21	13	1.75
113992--114087	20	4.8	20	75	7	97	17	20	20	40	1.91
113980--114067	40	2.4	36	83	12	108	15	20	21	42	1.89
113992--114087	40	2.4	41	81	8	117	17	20	20	40	1.91
114301--114350	20	2.5	20	80	0	73	22	18	22	38	1.94
115181--115234	24	2.2	24	90	0	81	22	16	20	40	1.91
115409--115433	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117939--118032	20	4.7	20	85	2	134	20	21	19	39	1.93
117913--118170	41	6.3	41	70	11	136	27	18	19	34	1.95
118029--118084	20	2.7	21	80	5	69	42	16	21	19	1.89
117941--118073	61	2.2	61	79	5	144	26	21	19	33	1.97
118022--118094	21	3.5	21	79	3	76	36	17	21	23	1.94
118104--118155	21	2.5	20	81	3	59	19	23	15	42	1.89
118145--118197	21	2.5	22	78	6	65	33	16	26	22	1.96
124226--124518	149	2.0	149	94	0	514	29	17	21	32	1.96
126104--126171	3	21.7	3	76	8	64	29	33	4	32	1.77
132750--132842	21	4.5	21	78	4	100	39	18	24	17	1.91
132750--132842	41	2.3	41	100	0	186	39	18	24	17	1.91
132769--132903	41	3.3	41	82	6	132	37	21	21	19	1.94
132831--132945	20	5.7	19	78	11	86	34	24	17	23	1.96
133113--133156	22	2.0	22	95	0	79	20	45	15	18	1.85
133400--133463	20	3.2	20	86	0	83	15	18	21	43	1.87
134783--134827	18	2.5	18	88	0	72	26	44	15	13	1.83
135309--135375	20	3.4	19	83	6	80	38	25	22	13	1.90
135364--135641	14	19.9	14	100	0	556	50	28	14	7	1.69
135651--135757	20	5.9	18	75	15	78	14	21	21	42	1.87
135651--135715	33	2.0	33	91	8	107	12	20	21	46	1.83
137625--137660	14	2.6	14	90	0	54	30	0	22	47	1.52
137777--137839	19	3.6	17	89	10	69	49	17	20	12	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137777--137825	19	2.6	19	100	0	98	48	16	20	14	1.80
137863--137920	20	2.9	20	94	0	98	15	20	24	39	1.91
138977--139030	24	2.2	24	86	0	72	25	16	18	38	1.92
139205--139229	12	2.1	12	100	0	50	72	0	28	0	0.86
141523--141653	19	7.7	19	66	23	94	42	19	22	14	1.88
141523--141649	33	3.8	33	88	4	202	42	19	22	14	1.88
141524--141656	66	2.0	66	97	0	248	41	19	22	16	1.90
141814--141847	14	2.4	14	90	0	59	44	23	0	32	1.54
143242--143321	42	1.9	42	84	0	106	22	17	38	21	1.93
145319--145459	19	7.8	19	70	17	95	43	20	23	12	1.85
145344--145429	33	2.6	33	96	1	154	38	23	26	11	1.89
145460--145504	19	2.4	19	88	0	72	6	11	24	57	1.57
146053--146105	20	2.7	20	93	0	88	26	20	28	24	1.99
146218--146258	21	2.0	21	85	0	55	36	31	14	17	1.90
174376--174405	2	15.0	2	92	0	51	53	0	0	46	1.00
177914--177943	2	15.0	2	100	0	60	50	0	0	50	1.00
178724--178754	2	15.5	2	100	0	62	51	0	48	0	1.00
184615--184662	25	1.9	25	86	0	69	35	4	0	60	1.16
186799--186827	14	2.0	15	93	6	51	62	0	6	31	1.22
188192--188241	24	2.1	24	85	7	66	60	16	2	22	1.46

Tables:   1

The End!