genome.fa.s233.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000233.1 Hibiscus syriacus cultivar Beakdansim tig00000403_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75305

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5603--5644	18	2.3	18	88	8	59	57	0	0	42	0.99
8164--8209	18	2.5	18	89	10	67	0	32	23	43	1.54
8164--8219	18	3.1	18	85	10	53	1	30	23	44	1.63
9767--9848	23	3.7	22	82	6	85	18	25	31	24	1.97
17025--17062	3	12.7	3	100	0	76	65	0	0	34	0.93
17971--17997	2	13.5	2	100	0	54	48	0	0	51	1.00
19087--19167	27	3.0	27	80	14	78	27	2	2	67	1.15
19099--19373	100	2.7	102	80	7	274	30	6	2	60	1.37
19401--19459	25	2.4	25	81	18	70	10	6	3	79	1.03
19472--19504	15	2.1	16	88	5	50	12	6	3	78	1.04
29908--29944	12	3.2	12	81	11	51	86	2	10	0	0.67
30926--31054	43	3.0	43	86	2	179	34	29	15	20	1.94
31619--31668	2	25.0	2	100	0	100	50	0	0	50	1.00
32756--32787	15	2.1	15	94	0	55	18	0	3	78	0.89
32742--33001	108	2.4	108	83	7	300	30	6	3	59	1.38
32847--33003	55	2.9	52	70	17	124	29	7	3	58	1.44
33069--33112	22	2.0	22	86	0	61	6	9	4	79	1.04
33069--33118	22	2.3	22	77	16	59	10	8	4	78	1.09
35566--35658	20	4.7	20	97	0	177	39	20	19	20	1.92
35525--35677	60	2.5	61	78	10	186	33	22	18	24	1.97
35849--35924	22	3.5	22	88	0	107	26	38	14	21	1.91
36261--36342	19	4.5	19	71	20	59	13	18	23	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36295--36415	20	6.4	20	80	11	112	14	16	24	43	1.86
36261--36396	53	2.5	53	88	3	193	14	18	24	42	1.88
36382--36425	20	2.2	20	91	0	70	11	13	20	54	1.69
38305--38461	20	8.5	20	73	19	110	42	20	17	19	1.89
38506--38594	20	4.4	20	94	0	142	19	20	23	37	1.94
39074--39160	21	4.1	21	74	0	84	20	36	19	22	1.95
39082--39164	42	2.0	42	83	4	105	21	38	19	20	1.93
40546--40581	14	2.6	14	90	0	54	30	0	22	47	1.52
40687--40782	33	2.8	33	88	3	129	43	19	22	13	1.86
40797--40881	33	2.5	33	90	1	125	12	24	17	44	1.84
44204--44310	20	5.3	20	92	2	162	25	19	25	29	1.98
44297--44349	20	2.7	20	93	0	88	20	20	20	37	1.94
44203--44330	40	3.2	40	80	8	136	25	19	23	31	1.98
44346--44391	21	2.2	21	92	0	74	39	17	26	17	1.91
48318--49133	204	4.0	204	98	0	1524	20	25	23	30	1.98
55500--55575	31	2.5	30	74	18	75	36	2	10	50	1.51
59567--59618	22	2.5	22	87	6	72	32	15	23	28	1.95
59474--59707	95	2.5	93	80	10	255	37	16	22	23	1.93
59643--59691	18	2.6	19	93	3	82	34	18	24	22	1.96
59643--59693	19	2.8	18	93	3	84	35	17	23	23	1.95
60371--60626	68	3.8	68	87	1	352	32	15	23	28	1.95
60371--60626	136	1.9	136	90	1	406	32	15	23	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60578--60942	81	4.5	81	88	2	477	38	11	20	29	1.88
60577--60897	160	2.0	161	90	0	500	38	11	21	28	1.88
62960--62996	19	2.0	19	89	5	58	45	8	0	45	1.32
70916--70962	24	2.0	24	95	0	85	42	12	14	29	1.83

Tables:   1

The End!