genome.fa.s2330.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002330.1 Hibiscus syriacus cultivar Beakdansim tig00004760_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136268

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2443--2478	18	2.0	18	94	0	63	55	25	0	19	1.43
2798--2853	20	2.8	20	88	0	85	14	16	23	46	1.83
3319--3355	18	2.1	18	89	0	56	32	5	10	51	1.60
3311--3363	24	2.2	24	86	0	70	35	3	13	47	1.61
3666--3754	39	2.3	39	90	3	135	49	16	13	20	1.79
3966--4004	20	2.0	20	89	0	60	38	20	20	20	1.94
4013--4068	20	2.8	20	91	0	94	14	19	28	37	1.91
4194--4230	14	2.6	14	95	0	65	48	18	2	29	1.62
5655--5754	21	4.7	21	76	6	85	25	20	32	23	1.98
15611--15655	14	3.2	14	96	0	81	51	26	13	8	1.70
28377--28434	29	2.0	29	86	0	80	31	27	12	29	1.92
28609--28741	35	3.8	34	82	4	140	18	24	19	36	1.94
28643--28752	36	3.1	36	80	2	141	17	24	19	39	1.92
28609--28752	71	2.0	71	89	2	218	18	25	18	38	1.92
28895--28924	15	2.0	15	100	0	60	33	13	40	13	1.83
30094--30149	29	1.9	29	81	0	67	32	26	10	30	1.90
39233--39280	20	2.4	20	82	0	60	29	22	22	25	1.99
39352--39385	17	2.1	17	88	5	52	26	23	8	41	1.83
42818--42885	3	22.0	3	82	5	82	60	0	0	39	0.97
43012--43159	45	3.3	45	96	0	260	36	20	20	22	1.95
43093--44278	76	15.6	76	98	0	2207	35	21	21	21	1.96
44955--45031	22	3.5	22	76	0	82	37	12	12	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45387--45498	54	2.1	54	86	0	152	21	22	16	40	1.91
46789--46984	93	2.1	92	83	3	241	36	20	14	28	1.93
49183--49216	17	2.1	16	94	5	59	0	20	0	79	0.73
51670--51708	14	2.8	14	85	11	53	58	7	17	15	1.59
51607--51694	36	2.4	36	73	3	88	56	7	15	19	1.63
56288--56349	3	20.0	3	80	6	70	59	0	0	40	0.97
64022--64088	33	2.0	33	91	5	109	25	35	17	20	1.95
76786--77014	4	57.2	4	95	0	386	48	23	1	25	1.60
80291--80324	12	2.8	12	95	0	59	55	17	26	0	1.42
81368--81417	19	2.7	19	84	9	59	24	30	20	26	1.98
81306--81480	64	2.7	65	86	7	218	27	25	20	26	1.99
83044--83096	24	2.2	24	100	0	106	39	26	16	16	1.91
88204--88247	21	2.1	21	86	0	61	6	43	15	34	1.74
89384--89432	19	2.6	19	84	9	57	24	28	20	26	1.99
98100--98167	7	9.7	7	76	6	50	75	2	4	17	1.10
98104--98158	18	3.4	17	76	16	53	72	3	5	18	1.18
98232--98310	33	2.5	33	85	8	101	44	6	6	43	1.55
98194--98592	38	11.2	37	74	14	177	45	7	4	43	1.50
98194--98592	76	5.6	75	72	18	257	45	7	4	43	1.50
99261--99856	84	7.2	83	77	6	584	24	20	24	30	1.99
99182--99837	164	4.0	164	86	3	911	24	20	24	30	1.98
106301--106361	18	3.2	18	72	20	52	75	3	4	16	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106424--106502	33	2.5	33	85	8	101	44	6	6	43	1.55
106511--106786	38	7.4	37	77	12	169	45	6	4	44	1.48
106433--106786	76	4.9	75	74	15	257	45	6	4	43	1.51
107833--107890	30	1.9	30	100	0	116	32	3	8	55	1.47
113226--113276	22	2.3	22	89	0	75	41	13	15	29	1.86
118491--118538	21	2.3	21	82	7	53	47	2	0	50	1.12
118492--118544	12	4.5	12	77	11	56	45	1	0	52	1.11
118884--118968	24	3.6	23	75	13	75	48	0	1	50	1.08
119827--119883	3	18.7	3	83	16	73	31	0	0	68	0.90
119837--119900	26	2.4	25	77	12	65	34	1	0	64	1.03
121192--121259	2	36.0	2	81	11	81	50	0	0	50	1.00
121149--121203	28	2.0	28	82	7	67	32	5	1	60	1.30
126554--126688	72	1.9	72	92	0	225	27	20	18	34	1.96
131368--132156	113	6.9	113	80	8	826	39	14	19	27	1.90
131368--132047	237	3.0	236	83	6	728	38	14	19	28	1.91
131386--132156	349	2.2	343	86	3	1084	39	13	19	27	1.89
132360--132403	3	14.0	3	90	9	70	31	0	0	68	0.90
132357--132420	26	2.4	25	77	12	65	34	1	0	64	1.03
133717--133789	28	2.6	27	77	14	69	43	0	0	56	0.99
133713--133801	45	2.0	45	82	4	108	40	0	0	59	0.97

Tables:   1

The End!