genome.fa.s2333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002333.1 Hibiscus syriacus cultivar Beakdansim tig00004769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68776

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870--923	15	3.2	17	77	17	51	40	1	1	55	1.21
6982--7073	45	2.0	47	93	4	161	31	13	20	34	1.91
8217--8594	203	1.9	199	95	2	684	38	12	10	39	1.76
9048--9103	24	2.3	24	93	0	94	48	28	21	1	1.60
9048--9112	24	2.6	24	87	4	76	46	29	21	3	1.67
13515--13862	179	1.9	181	94	2	612	27	21	21	30	1.98
15023--15181	72	2.1	76	87	6	229	27	18	15	38	1.91
15014--15140	36	3.5	36	73	2	121	25	18	14	40	1.89
15189--15483	105	2.9	104	90	2	461	30	19	12	37	1.89
15383--15458	36	2.1	36	87	0	107	23	19	15	40	1.90
15418--15643	88	2.6	88	93	0	380	32	20	10	37	1.86
21863--21925	21	2.9	21	85	4	81	20	36	25	17	1.94
21907--21946	21	1.9	21	89	0	62	25	40	25	10	1.86
24190--24232	21	2.0	21	100	0	86	34	0	41	23	1.55
25518--25728	106	2.0	105	91	0	341	34	24	18	22	1.96
26557--26609	24	2.2	24	93	0	88	49	28	20	1	1.60
26563--26620	24	2.3	24	88	5	80	48	27	20	3	1.66
28624--28708	22	3.9	22	88	0	125	10	47	17	24	1.79
28739--28797	31	1.9	31	93	6	102	23	38	15	22	1.92
40099--40264	32	5.2	32	97	0	314	51	16	21	10	1.73
43241--43390	55	2.7	54	78	8	160	44	12	21	22	1.85
46108--46211	27	3.8	27	97	1	190	15	21	14	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46117--46271	67	2.3	67	93	3	258	16	21	13	49	1.79
46198--46298	27	3.7	27	97	0	184	17	19	11	50	1.77
46117--46302	54	3.4	54	86	8	140	16	20	13	48	1.80
46108--46302	94	2.1	94	93	0	329	16	20	13	49	1.79
46117--46302	67	2.8	66	87	8	227	16	20	13	48	1.80
47463--47612	5	29.4	5	68	19	55	76	2	18	3	1.05
47466--47601	14	10.7	13	74	23	96	76	2	17	2	1.04
47469--47523	7	8.1	7	91	4	87	72	1	25	0	0.94
47474--47614	19	7.0	20	73	22	100	75	2	18	3	1.08
47471--47602	7	18.4	7	77	16	60	76	3	17	3	1.04
47463--47613	18	8.1	17	75	16	97	76	2	17	3	1.04
48655--48788	32	4.2	32	91	1	205	29	15	24	29	1.96
48655--48788	65	2.1	64	90	1	205	29	15	24	29	1.96
48893--49012	34	3.5	34	88	0	168	32	20	11	35	1.89
49311--49590	40	7.0	40	89	0	407	30	15	10	43	1.80
49584--49634	26	2.0	26	88	0	75	19	27	15	37	1.92
49666--49730	21	3.4	21	68	24	70	24	26	12	36	1.91
49609--49893	36	7.8	36	89	1	408	26	21	13	37	1.91
49609--50060	108	4.3	108	78	10	438	26	19	14	39	1.90
49966--50097	37	3.5	36	74	8	95	30	15	14	39	1.88
49994--50173	76	2.4	76	79	9	183	30	19	12	37	1.89
50865--50918	17	3.1	17	70	15	56	46	11	18	24	1.81

Tables:   1

The End!