genome.fa.s2334.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002334.1 Hibiscus syriacus cultivar Beakdansim tig00004770_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102405

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5041--5085	15	2.9	15	83	12	56	57	0	0	42	0.98
5715--5772	20	2.9	20	75	12	57	51	3	1	43	1.28
11851--11909	18	3.1	18	72	13	64	13	20	23	42	1.88
12040--12159	21	5.9	21	67	21	85	35	25	21	17	1.95
12069--12138	20	3.5	20	69	18	63	38	24	24	12	1.90
12050--12162	41	2.8	41	95	2	203	36	26	22	15	1.93
12107--12191	21	4.1	21	69	14	68	36	27	18	17	1.94
17995--18110	60	1.9	60	91	3	189	34	15	15	34	1.89
18616--18681	21	3.3	19	76	17	62	53	1	1	43	1.19
18630--18681	19	2.6	21	81	6	63	51	0	1	46	1.12
19798--19849	20	2.6	20	87	6	79	21	21	15	42	1.89
31310--31352	21	2.0	22	81	4	52	30	2	6	60	1.35
38040--38103	32	2.0	32	84	3	85	34	17	10	37	1.85
38225--38451	50	4.5	50	95	1	402	29	17	27	25	1.97
46645--46688	14	3.1	14	86	0	70	9	2	18	70	1.24
46657--46719	24	2.6	24	87	0	90	12	9	15	61	1.55
47122--47159	2	19.0	2	100	0	76	50	0	0	50	1.00
53550--53647	20	4.8	20	77	3	88	36	23	18	21	1.95
53491--53647	41	3.9	41	70	11	126	38	25	17	18	1.93
53634--53804	20	8.6	20	84	5	107	35	26	18	20	1.95
53614--53823	60	3.5	58	80	7	208	37	25	17	20	1.94
53668--53823	20	7.8	20	87	4	174	35	25	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53634--53823	40	4.8	40	86	5	208	36	25	17	20	1.94
54505--54551	24	2.0	24	87	8	69	25	14	21	38	1.92
57024--57401	19	21.4	19	81	15	483	46	18	20	14	1.83
57091--57401	71	4.4	71	89	8	497	46	17	20	14	1.83
57052--57423	52	7.0	52	90	6	556	46	17	21	14	1.83
57024--57423	71	5.7	69	83	9	413	46	18	21	14	1.83
57430--57530	19	5.6	19	84	13	142	14	23	17	43	1.87
57637--57673	14	2.6	14	91	0	65	45	21	0	32	1.52
59652--59708	14	3.7	14	77	20	60	45	22	21	10	1.82
59633--59725	33	2.8	33	95	0	168	47	21	20	10	1.80
59612--59730	19	6.8	19	77	18	123	47	22	20	10	1.80
59726--59838	19	6.5	19	74	19	120	7	17	28	46	1.74
59726--59817	33	2.8	33	93	3	150	7	18	28	45	1.76
59756--59854	19	5.4	18	76	12	80	9	18	27	45	1.79
59902--60370	93	5.1	93	98	0	904	46	18	13	21	1.83
62076--62165	14	5.7	14	72	23	72	43	23	24	8	1.82
62068--62182	33	3.5	33	96	0	212	46	20	22	9	1.79
62090--62187	19	5.7	19	70	22	81	44	22	22	10	1.82
62199--62255	14	3.7	14	75	20	60	8	24	22	43	1.81
62213--62301	19	4.9	19	72	15	80	11	23	21	43	1.84
62183--62301	33	3.4	33	88	6	157	10	22	22	44	1.82
62392--62462	33	2.2	33	94	0	124	47	16	23	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62642--62696	22	2.5	22	81	0	74	20	16	40	23	1.91
62843--63036	20	9.6	20	79	5	203	19	20	24	35	1.95
62845--63016	60	2.8	60	84	0	236	20	19	25	34	1.96
62842--63157	60	5.2	60	77	8	232	19	18	25	36	1.95
63003--63100	20	4.8	20	77	3	79	21	18	23	36	1.95
63003--63159	41	3.9	41	70	14	110	18	17	25	38	1.93
76821--76910	31	2.9	31	85	5	110	17	16	11	54	1.70
77197--77280	21	4.0	21	84	3	107	38	13	7	41	1.71
78152--78187	18	2.0	18	94	0	63	16	25	44	13	1.85
78653--78690	4	9.5	4	94	0	58	26	5	23	44	1.74
78944--78971	4	7.0	4	100	0	56	25	0	50	25	1.50
78764--78971	99	2.1	100	86	4	296	29	9	28	32	1.89
95130--95186	26	2.2	26	80	0	69	22	21	22	33	1.97
101170--101201	15	2.1	15	94	0	55	9	6	6	78	1.10

Tables:   1

The End!