genome.fa.s2335.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002335.1 Hibiscus syriacus cultivar Beakdansim tig00004771_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123960

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6806--6843	19	2.1	19	90	5	60	28	28	18	23	1.98
13565--13614	19	2.6	19	100	0	100	30	24	18	28	1.97
19423--19459	20	1.9	19	89	10	58	45	10	24	18	1.81
21186--21234	18	2.7	18	83	3	62	79	2	14	4	0.97
21476--21539	33	2.0	33	84	3	85	28	10	15	45	1.80
21895--21919	3	8.3	3	100	0	50	68	0	0	32	0.90
27562--27630	24	2.9	24	78	4	68	10	23	14	52	1.72
31941--31965	11	2.3	11	100	0	50	40	8	0	52	1.31
33967--34018	21	2.5	20	81	9	59	67	5	5	21	1.33
34747--34799	26	2.0	26	81	0	61	26	18	30	24	1.98
43934--43997	3	21.7	3	93	3	112	32	34	0	32	1.58
44849--44900	25	2.2	23	82	6	59	38	15	1	44	1.58
46257--46393	3	45.7	3	92	0	229	35	2	0	62	1.07
46898--46932	18	1.9	18	100	0	70	80	2	17	0	0.84
59183--59235	9	6.2	9	77	16	51	81	0	18	0	0.70
59186--59222	13	2.9	12	92	8	56	86	0	13	0	0.57
59186--59238	10	5.5	10	82	6	56	83	0	16	0	0.66
59183--59238	19	3.0	18	82	10	67	82	0	17	0	0.68
59183--59238	29	2.0	29	85	3	78	82	0	17	0	0.68
59556--59595	16	2.5	16	88	8	55	30	7	7	55	1.56
60378--61173	82	9.7	82	94	1	1400	27	13	23	35	1.93
60378--61173	247	3.2	247	96	1	1427	27	13	23	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60378--61173	329	2.4	330	95	2	1438	27	13	23	35	1.93
61824--62786	113	8.5	112	93	2	1378	36	13	20	29	1.90
61801--62791	339	2.9	339	91	3	1521	36	13	19	29	1.90
62924--63040	3	39.0	3	94	3	209	34	0	0	64	0.99
67813--67902	43	2.1	43	97	0	171	44	13	5	36	1.67
68598--68627	13	2.4	12	94	5	51	80	0	0	20	0.72
73817--73871	28	1.9	29	96	3	103	50	18	7	23	1.71
75496--75618	50	2.5	50	79	2	149	14	34	28	22	1.94
75741--75781	10	4.1	10	84	12	57	31	29	0	39	1.57
75802--75830	14	2.1	14	93	6	51	20	6	6	65	1.40
75905--76126	111	2.0	111	94	0	390	36	9	10	44	1.70
77633--77690	18	3.2	18	87	4	82	24	29	20	25	1.99
78023--78062	21	1.9	21	100	0	80	30	20	37	12	1.89
78284--78368	35	2.5	33	78	14	91	25	8	10	55	1.62
80831--80923	30	3.1	31	77	9	102	34	20	18	26	1.96
81058--81093	17	2.0	19	89	10	58	38	11	5	44	1.63
81582--81739	64	2.5	64	84	4	194	25	19	19	34	1.96
84597--84689	30	3.1	30	80	6	107	33	21	18	26	1.96
84824--84859	17	2.0	19	89	10	58	38	11	5	44	1.63
85348--85506	63	2.5	64	83	5	189	26	20	19	33	1.96
88150--88272	50	2.5	50	83	0	147	21	27	35	15	1.93
93036--93120	32	2.7	32	94	0	152	55	10	16	17	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97507--97538	16	2.1	16	88	11	50	53	0	0	46	1.00
98962--99082	43	2.8	43	77	2	127	21	5	19	52	1.66
101589--101684	40	2.4	40	82	0	102	54	15	3	27	1.56
101936--101960	11	2.3	11	100	0	50	0	12	0	88	0.53
107573--107651	32	2.5	31	84	6	106	59	1	36	2	1.19
122974--123028	18	2.8	19	76	20	60	20	16	1	61	1.43
122754--123075	156	2.1	151	85	9	429	27	16	5	50	1.67
122754--123152	156	2.6	153	81	12	387	28	16	5	50	1.66
123799--123825	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1

The End!