Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002336.1 Hibiscus syriacus cultivar Beakdansim tig00004773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54211

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2769--2905
16
9.3
15
72
19
94
72
0
19
7
1.07
2785--2903
8
14.9
8
74
20
99
73
0
19
7
1.07
2786--2862
25
3.2
25
81
17
83
75
0
16
7
1.03
2799--2903
50
2.1
49
83
10
126
72
0
20
7
1.08
2794--2903
25
4.5
24
75
19
88
73
0
19
7
1.06
8118--8164
8
6.0
8
81
18
55
87
2
0
10
0.63
8103--8164
23
2.8
23
83
9
76
85
4
0
9
0.73
8105--8164
20
3.0
22
83
11
67
85
5
0
10
0.75
8122--8161
16
2.5
16
91
0
62
87
2
0
10
0.63
8343--8396
22
2.6
20
83
16
74
57
9
9
24
1.59
9812--9849
2
19.5
2
94
5
69
50
0
0
50
1.00
11223--11265
21
2.0
21
95
0
77
18
9
11
60
1.57
13605--13641
14
2.6
14
91
0
56
64
5
8
21
1.40
13605--13649
14
3.2
14
83
0
54
66
4
6
22
1.33
14107--14168
29
2.1
29
82
5
72
54
3
11
30
1.51
14997--15026
15
1.9
16
93
6
53
46
6
6
40
1.56
15092--15423
182
1.8
179
79
8
386
43
9
9
37
1.70
15288--16116
415
2.0
411
84
4
1069
39
8
7
44
1.64
16301--16372
2
36.0
2
100
0
144
50
0
0
50
1.00
21244--21346
28
3.7
28
75
8
93
47
13
0
37
1.50
21256--21346
29
3.3
27
77
10
76
50
10
1
37
1.45
21342--21410
29
2.4
29
95
0
120
49
20
1
28
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27716--27873
29
5.6
29
75
8
137
48
13
1
36
1.51
31947--32001
23
2.3
23
84
6
65
50
0
0
49
1.00
31949--32016
23
2.9
23
77
12
59
44
0
1
54
1.09
32126--32195
27
2.5
29
81
9
83
48
0
1
50
1.09
32155--32209
16
3.8
16
73
21
50
45
0
0
54
0.99
32196--32240
23
2.0
23
90
0
72
53
2
0
44
1.13
34218--34269
23
2.3
23
82
0
68
26
21
19
32
1.97
41624--41670
21
2.2
21
96
0
85
38
19
12
29
1.89
42076--42119
23
2.0
22
86
4
61
59
4
4
31
1.38
42061--42388
98
3.3
99
68
16
250
48
9
5
37
1.58
42071--42860
193
4.1
195
80
5
753
47
10
5
36
1.61
47243--47282
3
13.3
3
94
0
71
65
0
2
32
1.06
47755--47975
66
3.4
66
86
3
288
39
14
21
24
1.91
47755--47975
65
3.4
66
85
4
288
39
14
21
24
1.91

Tables:   1

The End!