genome.fa.s2337.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002337.1 Hibiscus syriacus cultivar Beakdansim tig00004774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86217

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5898--5937	20	1.9	22	90	10	66	72	2	12	12	1.22
7023--7062	19	2.1	19	95	0	71	5	20	42	32	1.73
7221--7264	22	2.0	22	90	0	70	45	9	2	43	1.48
7195--7252	29	2.1	26	87	9	80	46	5	0	48	1.24
7229--7324	36	2.7	35	80	6	131	43	12	3	40	1.58
9801--9985	101	1.9	97	87	4	255	35	12	11	40	1.80
16553--16629	32	2.4	32	95	0	136	23	14	10	51	1.72
23737--23811	3	24.7	3	83	2	96	60	0	1	38	1.06
23738--23811	15	4.9	15	91	1	112	59	0	1	39	1.06
24181--24267	36	2.4	36	90	0	129	21	20	10	47	1.80
24366--24423	19	3.1	19	67	18	57	20	24	10	44	1.82
24318--24423	38	2.6	39	89	7	151	25	23	8	42	1.82
24162--24534	154	2.5	147	87	6	536	28	19	11	39	1.87
24361--24904	113	4.8	113	93	1	871	28	19	14	37	1.91
25843--28095	83	26.7	83	83	7	2724	36	22	12	28	1.90
25843--28095	166	13.3	166	90	4	3407	36	22	12	28	1.90
25843--28095	249	8.9	249	90	4	3448	36	22	12	28	1.90
29243--29279	1	37.0	1	88	0	56	0	5	0	94	0.30
29243--29280	10	3.8	10	92	0	67	0	7	0	92	0.40
36581--36612	15	2.1	15	94	0	55	46	9	18	25	1.79
41532--41561	16	1.9	15	93	6	51	0	20	0	80	0.72
41985--42044	3	19.7	3	86	3	84	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44749--44799	13	3.9	13	89	0	75	27	19	21	31	1.97
44771--44936	85	2.0	84	84	1	215	31	19	17	30	1.95
47300--47331	15	2.0	17	88	11	50	62	12	18	6	1.50
61026--61067	21	2.0	22	86	9	61	47	4	0	47	1.23
61137--61788	283	2.3	284	82	7	797	34	13	5	46	1.67
61574--62000	216	2.0	214	82	4	527	35	16	4	42	1.70
63562--63603	20	2.0	21	86	4	59	35	14	16	33	1.89
64014--64070	26	2.2	26	100	0	114	29	33	17	19	1.95
68185--68372	94	2.0	94	92	0	313	28	20	14	36	1.92

Tables:   1

The End!