genome.fa.s2338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002338.1 Hibiscus syriacus cultivar Beakdansim tig00004775_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91096

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371--412	21	2.0	21	100	0	84	28	19	19	33	1.96
2284--2321	17	2.3	17	86	13	53	2	0	15	81	0.80
5320--5356	18	2.0	19	89	5	58	62	5	8	24	1.44
15299--15599	151	2.0	152	92	1	507	32	17	6	42	1.77
18102--18135	5	6.8	5	87	12	52	41	0	0	58	0.98
31209--31255	23	2.0	23	83	4	58	68	12	14	4	1.36
34815--34875	25	2.4	25	80	17	65	39	3	6	50	1.45
36605--36638	17	2.0	17	94	0	59	17	11	32	38	1.86
37012--37066	29	1.9	28	85	3	74	41	1	3	52	1.29
38008--38074	27	2.5	27	97	0	125	19	11	13	55	1.69
39579--39965	186	2.1	181	90	2	614	41	4	8	45	1.54
41476--41552	33	2.3	34	86	2	102	15	23	20	40	1.91
41658--41694	14	2.6	14	86	0	56	48	21	0	29	1.50
42959--43030	19	3.8	19	76	5	74	19	19	37	23	1.94
42934--43032	39	2.5	39	78	4	110	22	19	35	23	1.96
43516--43584	20	3.5	20	95	0	129	39	24	20	15	1.92
43515--43601	40	2.4	37	81	14	108	40	22	21	14	1.91
43608--43762	34	4.4	34	77	13	170	15	18	20	45	1.85
43591--43762	53	3.2	52	71	16	163	16	19	19	44	1.86
43633--43765	20	7.3	20	75	22	123	17	18	21	43	1.88
45636--45723	20	4.4	20	84	1	106	46	22	15	14	1.83
46050--46115	22	3.0	22	86	0	96	21	13	39	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46828--46866	20	2.0	20	89	0	60	51	15	20	12	1.76
46607--47254	181	3.6	180	84	4	793	42	13	17	26	1.86
47320--47376	21	2.7	21	100	0	114	42	22	10	24	1.85
47572--47623	23	2.3	23	82	0	59	40	11	3	44	1.59
52828--53063	36	6.5	36	83	5	273	45	3	7	43	1.50
52836--53052	71	3.0	72	81	10	251	45	4	7	42	1.52
58733--58764	10	3.1	10	91	8	55	18	31	31	18	1.95
60342--60830	85	5.8	85	87	2	673	34	21	19	24	1.96
60342--60830	169	2.9	169	87	5	670	34	21	19	24	1.96
60342--60830	254	1.9	254	86	3	689	34	21	19	24	1.96
61895--61961	22	3.0	22	95	2	116	25	28	26	19	1.99
63651--63695	21	2.1	21	87	0	63	15	24	28	31	1.96
66974--67133	36	4.3	36	82	9	180	44	3	8	43	1.53
67117--67150	2	17.5	2	93	6	61	50	0	0	50	1.00
67080--67185	54	2.0	53	85	7	144	45	1	6	46	1.40
67045--67224	90	2.0	89	84	3	236	44	3	8	43	1.52
67011--67240	126	1.8	128	89	4	367	43	3	9	43	1.54
67137--67247	36	3.0	37	82	5	143	44	5	10	39	1.62
68546--68573	14	2.0	14	100	0	56	14	0	0	85	0.59
68637--68663	5	5.4	5	100	0	54	18	0	0	81	0.69
72979--73017	18	2.2	18	90	9	62	38	2	7	51	1.44
73580--73617	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73779--73886	23	4.7	23	75	2	74	38	22	18	20	1.93
74019--74146	45	2.8	45	82	2	141	35	21	7	36	1.80
77181--77298	57	2.1	57	98	0	227	33	13	24	27	1.93
77442--77489	23	2.1	23	88	0	69	35	12	18	33	1.89
77865--77935	23	3.2	23	84	4	83	40	21	4	33	1.72
78336--78422	39	2.2	39	93	0	147	17	14	20	47	1.83
78677--78713	18	2.1	18	89	0	56	51	10	5	32	1.60
79008--79058	25	2.0	25	92	0	84	39	19	7	33	1.81
79332--79394	23	2.7	23	90	0	90	38	19	6	36	1.77
82055--82354	55	5.4	55	83	6	322	30	26	16	27	1.97
82066--82669	99	5.7	111	84	8	417	29	25	16	28	1.97
82055--82671	150	3.9	160	83	8	439	29	26	16	28	1.97
82097--82683	51	11.3	51	85	6	485	29	25	16	28	1.96
82207--82678	99	4.6	99	84	9	470	29	26	15	28	1.96
82097--82683	55	11.3	51	86	5	528	29	25	16	28	1.96
82262--82684	150	2.8	149	85	4	517	29	26	15	29	1.96
83991--84036	16	3.2	14	87	9	58	6	17	0	76	1.00
84038--84094	25	2.3	25	84	6	71	0	28	1	70	0.98

Tables:   1

The End!