genome.fa.s2339.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002339.1 Hibiscus syriacus cultivar Beakdansim tig00004776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195769

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473--539	22	3.0	22	82	0	80	40	5	13	40	1.69
1042--1074	15	2.1	16	88	5	50	51	3	15	30	1.58
1389--1442	22	2.3	23	78	15	58	61	1	5	31	1.30
4880--4919	15	2.9	15	89	10	59	42	0	0	57	0.98
9412--9484	22	3.3	22	75	17	71	49	13	12	24	1.77
11738--12070	44	7.7	43	77	10	290	45	7	18	27	1.77
11742--12077	87	3.9	84	76	11	272	46	7	18	26	1.76
11760--12132	129	2.9	130	78	6	319	47	7	18	26	1.74
12246--12375	51	2.6	50	83	4	154	16	33	27	21	1.95
16512--16564	18	2.9	18	88	0	88	32	18	22	26	1.97
18243--18281	18	2.2	18	90	4	62	66	0	0	33	0.92
23402--23427	6	4.3	6	100	0	52	65	15	19	0	1.27
24398--24432	14	2.4	15	85	9	54	57	5	0	37	1.23
28271--28348	20	3.9	20	93	0	129	32	19	21	26	1.97
29143--29201	30	2.0	29	83	3	73	37	6	22	33	1.80
33865--33905	19	2.2	19	90	0	64	39	21	2	36	1.67
33806--34042	79	3.0	78	91	3	379	33	20	4	41	1.73
34006--34140	60	2.3	58	81	2	153	30	25	5	38	1.79
34266--34378	57	2.0	57	84	10	151	37	4	25	32	1.76
35050--35182	60	2.2	61	85	8	182	37	9	11	41	1.74
35073--35196	60	2.1	60	80	8	137	34	12	12	40	1.81
37481--37540	24	2.5	24	83	2	68	53	3	11	31	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45596--45629	2	17.0	2	100	0	68	50	0	0	50	1.00
46389--46549	64	2.5	65	85	7	195	33	18	21	27	1.96
47041--47075	18	1.9	18	88	11	54	54	5	17	22	1.64
47407--47434	2	14.0	2	100	0	56	50	0	0	50	1.00
47982--48296	149	2.1	149	91	2	499	26	17	21	34	1.95
48264--48308	23	2.0	23	90	0	72	22	26	26	24	2.00
51446--51606	64	2.5	63	85	5	207	34	18	20	27	1.95
52098--52132	18	1.9	18	88	11	54	54	5	17	22	1.64
53032--53348	149	2.1	151	91	3	516	27	17	21	34	1.95
53316--53360	23	2.0	23	90	0	72	22	26	26	24	2.00
58836--58864	2	14.5	2	100	0	58	51	0	0	48	1.00
59431--59466	2	18.5	2	94	5	65	50	0	0	50	1.00
76564--76604	21	2.0	21	95	0	73	14	9	9	65	1.46
82291--82320	13	2.3	13	100	0	60	33	16	23	26	1.96
82480--82538	2	29.5	2	100	0	118	50	0	0	49	1.00
89897--90012	59	2.0	57	85	11	155	37	4	24	33	1.75
90089--90239	61	2.5	60	81	6	180	39	3	23	33	1.71
97183--97248	31	2.1	33	82	5	82	46	12	4	36	1.61
100625--100696	15	4.9	15	82	3	101	41	6	19	31	1.78
100620--100696	30	2.6	29	93	4	136	40	7	18	33	1.79
100679--100748	20	3.5	20	96	0	131	40	10	14	35	1.79
100915--100979	28	2.3	27	84	10	85	52	1	1	44	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100914--101018	29	3.5	30	78	19	105	53	1	0	43	1.18
100945--101004	24	2.7	23	82	7	61	56	1	0	41	1.09
101032--101075	22	2.0	23	86	4	63	54	0	0	45	0.99
101036--101092	21	2.6	22	81	10	64	52	0	0	47	1.00
100972--101092	54	2.3	51	77	19	133	50	0	0	47	1.12
101281--101400	42	2.9	42	94	0	204	45	18	19	16	1.85
101552--101613	22	2.8	23	88	9	94	25	0	3	70	1.02
101979--102067	36	2.4	38	78	17	114	51	3	0	44	1.18
105876--106054	89	2.0	89	100	0	358	23	15	20	40	1.90
107817--107863	24	2.0	23	87	4	67	55	2	6	36	1.37
108062--108094	3	11.0	3	100	0	66	33	0	0	66	0.92
108145--108184	20	2.0	20	85	4	55	62	0	5	32	1.17
114297--114359	31	2.0	31	84	6	83	49	6	6	38	1.54
118407--118439	18	1.9	17	88	11	50	45	0	3	51	1.16
122780--122824	19	2.2	21	84	7	58	26	17	8	46	1.78
123328--123372	19	2.2	20	85	14	58	24	4	22	48	1.68
133655--133722	33	2.1	33	100	0	136	33	14	17	33	1.91
136685--136720	17	2.1	17	94	0	63	25	0	25	50	1.50
137352--137465	59	1.9	59	89	3	176	35	12	13	38	1.82
142496--142537	21	2.0	21	85	0	57	9	23	38	28	1.86
152758--152802	21	2.1	21	87	0	63	31	28	24	15	1.96
154496--154562	22	3.0	22	95	2	116	19	26	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157698--157742	21	2.1	21	87	0	63	31	28	24	15	1.96
157766--157808	22	2.0	21	86	8	61	25	34	27	11	1.91
159434--159500	22	3.0	22	95	2	116	19	26	28	25	1.99
164383--164408	3	8.7	3	100	0	52	30	0	0	69	0.89
171016--171051	7	5.1	7	100	0	72	13	41	0	44	1.44
172794--173016	113	2.0	114	97	0	421	30	8	21	39	1.83
182700--182744	12	3.8	12	91	2	65	11	8	46	33	1.70
182698--182763	23	2.8	24	83	4	80	12	12	46	28	1.77
182852--182888	12	3.0	12	92	4	56	10	16	54	18	1.71
183455--183495	16	2.7	16	81	7	50	63	2	0	34	1.08
185027--185102	32	2.4	32	81	16	111	55	9	18	17	1.68
187320--187416	30	3.3	29	76	13	110	26	35	11	26	1.90
187299--187531	57	4.0	57	70	13	215	25	35	13	25	1.93
187299--187384	27	3.1	27	70	15	84	25	36	15	23	1.94
187365--187456	45	2.0	45	87	0	130	25	38	9	27	1.87
187330--187792	132	3.6	131	84	8	657	28	36	10	24	1.88
187348--187573	117	1.9	117	95	0	407	26	35	12	25	1.91
187482--187705	45	5.0	45	73	7	206	30	37	8	23	1.84
187410--187606	75	2.7	75	80	5	197	27	37	11	23	1.90
187482--187545	15	4.3	15	67	15	51	28	35	10	25	1.89
187549--187664	30	4.0	29	77	11	121	31	37	6	23	1.81
187667--187792	30	4.3	30	80	9	152	29	37	7	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187565--187767	102	2.0	100	80	9	223	28	37	9	24	1.86
187786--187867	15	5.5	15	76	0	74	8	42	20	28	1.81
187788--187867	30	2.7	30	96	0	142	8	43	21	26	1.81
193350--193428	22	3.6	22	81	1	97	31	20	25	22	1.98

Tables:   1

The End!