genome.fa.s234.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000234.1 Hibiscus syriacus cultivar Beakdansim tig00000404_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64718

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5749--5928	65	2.8	63	83	9	213	30	23	17	28	1.97
11719--11799	23	3.7	23	73	8	87	25	24	24	24	2.00
11786--11837	20	2.6	20	96	0	95	30	26	25	17	1.97
11718--11817	43	2.3	42	78	8	103	27	25	25	23	2.00
13368--13409	21	2.0	21	85	0	57	9	40	16	33	1.81
14524--14630	56	1.9	56	85	11	148	29	24	19	26	1.98
17100--17147	18	2.5	19	86	6	62	31	18	27	22	1.97
17474--17505	15	2.1	15	100	0	64	25	15	18	40	1.90
18597--18729	32	3.9	32	75	12	131	29	22	21	27	1.99
18599--18713	39	3.1	38	68	29	113	29	21	21	26	1.99
18595--18736	71	2.0	71	97	0	266	28	23	21	26	1.99
18797--18903	32	3.3	32	73	0	88	28	19	19	32	1.96
21317--21354	18	2.2	18	85	4	51	44	0	0	55	0.99
24753--24780	2	14.0	2	100	0	56	50	0	0	50	1.00
25074--25124	24	2.1	24	100	0	102	49	15	3	31	1.63
25470--25526	23	2.6	22	86	8	80	26	24	17	31	1.97
25470--25533	23	2.8	23	83	6	78	25	26	17	31	1.97
32273--32317	23	2.0	23	86	0	63	28	24	17	28	1.97
33114--33150	11	3.4	11	92	0	56	54	24	0	21	1.45
34791--34858	21	3.2	21	89	0	100	20	25	16	38	1.92
34819--34886	21	3.3	21	79	4	66	27	23	17	30	1.97
34854--34947	20	4.7	20	83	7	109	38	19	21	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35487--35574	19	4.8	19	77	14	96	45	21	21	11	1.83
35487--35604	52	2.2	53	89	1	175	45	22	22	10	1.81
35600--35745	19	8.1	19	75	17	141	11	23	19	45	1.83
35622--35678	14	3.7	14	75	20	60	10	24	21	43	1.83
35605--35737	33	3.8	33	87	8	176	11	23	20	45	1.83
35669--35736	20	3.5	19	84	6	73	11	23	22	42	1.86
37379--37754	94	4.1	93	93	2	589	22	12	18	47	1.82
37587--37619	17	1.9	17	88	11	50	24	15	15	45	1.84
37843--37924	20	4.2	20	86	9	123	51	15	21	10	1.75
37843--37924	39	2.1	40	88	6	123	51	15	21	10	1.75
37866--37984	33	3.4	33	82	8	112	48	21	20	9	1.77
37953--37990	20	1.9	20	94	0	67	50	26	15	7	1.72
37999--38093	33	2.8	33	85	1	118	8	18	24	48	1.76
37996--38093	19	5.7	18	69	23	68	8	19	24	47	1.76
39943--39985	13	3.4	13	77	3	52	27	0	18	53	1.45
40419--40549	65	2.0	65	100	0	262	19	25	19	34	1.96
42634--42687	24	2.2	24	93	0	90	40	20	18	20	1.91
43504--43693	61	3.1	63	81	7	221	36	17	23	22	1.95
43515--43692	21	8.7	21	84	5	195	37	17	24	20	1.94
43515--43693	41	4.4	41	86	4	245	37	17	24	20	1.94
43515--43714	41	4.9	41	83	6	210	36	18	24	21	1.95
49050--49111	27	2.3	27	100	0	124	22	6	30	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56760--56855	28	3.5	28	69	25	87	28	17	27	27	1.98
56761--57081	54	5.8	55	80	4	204	25	21	26	26	2.00
56782--57078	27	10.8	28	65	20	119	25	22	26	25	2.00
62274--62354	31	2.6	31	76	5	85	50	9	4	34	1.57

Tables:   1

The End!