Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002341.1 Hibiscus syriacus cultivar Beakdansim tig00004779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1266629
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 5
Found at i:1058131 original size:31 final size:31
Alignment explanation
Indices: 1058096--1058249 Score: 222
Period size: 31 Copynumber: 5.0 Consensus size: 31
1058086 CCCGAAGGAC
*
1058096 CAGTCCATA-GATCCCGAAGAATC-TAGGTAAT
1 CAGTCCATATG-TCCCGAAGAA-CATAGGTAAA
*
1058127 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
1058158 CAATCCATATATCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
1058189 CAGTCCGTATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
1058220 CAATCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
1058250 CCCTCGACCC
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 1 0.01
31 109 0.98
32 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:1062676 original size:12 final size:12
Alignment explanation
Indices: 1062659--1062690 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
1062649 CTATATGGTA
1062659 TGAACAGTACCG
1 TGAACAGTACCG
*
1062671 TGAACATTACCG
1 TGAACAGTACCG
1062683 TGAACAGT
1 TGAACAGT
1062691 GAAAATTTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (12 bp):
TGAACAGTACCG
Found at i:1063415 original size:31 final size:31
Alignment explanation
Indices: 1063380--1063564 Score: 266
Period size: 31 Copynumber: 6.0 Consensus size: 31
1063370 CTCGAAGGAC
* *
1063380 CAGTCCATA-GATCCTGAAGAATC-TAGGTAAT
1 CAGTCCATATG-TCCCGAAGAA-CATAGGTAAA
*
1063411 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
1063442 CAGTTCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1063473 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
1063504 CAGTCCATATGTCCCAAAGAACATATGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
1063535 CAGTTCATATGTCCTGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
1063565 CCGTAAACCC
Statistics
Matches: 140, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
30 1 0.01
31 138 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.23
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:1065660 original size:28 final size:27
Alignment explanation
Indices: 1065629--1065692 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 27
1065619 TAGGGCTATG
1065629 GGGTATTTTAGGTCATTTCACACTTCAA
1 GGGTATTTTAGGTCATTTCACACTTC-A
**
1065657 GGGTATTTTTTGTCATTTCACACTTCA
1 GGGTATTTTAGGTCATTTCACACTTCA
1065684 GGTGTATTT
1 GG-GTATTT
1065693 CATTCCTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 3 0.09
28 30 0.91
ACGTcount: A:0.20, C:0.16, G:0.19, T:0.45
Consensus pattern (27 bp):
GGGTATTTTAGGTCATTTCACACTTCA
Found at i:1071303 original size:16 final size:17
Alignment explanation
Indices: 1071278--1071311 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1071268 TGGTGGACGT
1071278 TTATTATTTTTTT-CAA
1 TTATTATTTTTTTACAA
*
1071294 TTATTTTTTTTTTACAA
1 TTATTATTTTTTTACAA
1071311 T
1 T
1071312 AAGAGATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTATTTTTTTACAA
Found at i:1077997 original size:16 final size:16
Alignment explanation
Indices: 1077976--1078008 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
1077966 TAATAAATAA
1077976 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
1077992 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
1078008 A
1 A
1078009 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:1078099 original size:16 final size:16
Alignment explanation
Indices: 1078078--1078138 Score: 104
Period size: 16 Copynumber: 3.8 Consensus size: 16
1078068 TAATAAATAA
*
1078078 ACGAACATAAACGACC
1 ACGAACATAAACGAAC
1078094 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
1078110 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
1078126 ACGAACATAAACG
1 ACGAACATAAACG
1078139 TTGGAGACCC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.54, C:0.25, G:0.13, T:0.08
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:1079254 original size:14 final size:14
Alignment explanation
Indices: 1079236--1079288 Score: 69
Period size: 14 Copynumber: 4.1 Consensus size: 14
1079226 GAACATAAAT
1079236 GAACATAACCGAAC
1 GAACATAACCGAAC
*
1079250 AAACAT-A---AAC
1 GAACATAACCGAAC
1079260 GAACATAACCGAAC
1 GAACATAACCGAAC
1079274 GAACATAACCGAAC
1 GAACATAACCGAAC
1079288 G
1 G
1079289 TTCACGAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 8 0.24
11 1 0.03
13 1 0.03
14 23 0.70
ACGTcount: A:0.53, C:0.26, G:0.13, T:0.08
Consensus pattern (14 bp):
GAACATAACCGAAC
Found at i:1079254 original size:24 final size:24
Alignment explanation
Indices: 1079227--1079287 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
1079217 TAAATGAATG
*
1079227 AACATAAATGAACATAACCGAACA
1 AACATAAACGAACATAACCGAACA
*
1079251 AACATAAACGAACATAACCGAACG
1 AACATAAACGAACATAACCGAACA
*
1079275 AACATAACCGAAC
1 AACATAAACGAAC
1079288 GTTCACGAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.56, C:0.25, G:0.10, T:0.10
Consensus pattern (24 bp):
AACATAAACGAACATAACCGAACA
Found at i:1081918 original size:2 final size:2
Alignment explanation
Indices: 1081911--1081948 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1081901 AATTTTAGAG
1081911 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1081949 TGGATGTTGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1088405 original size:19 final size:19
Alignment explanation
Indices: 1088381--1088420 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
1088371 TCATCCTTGC
1088381 ATTACTTTCTGAAGCGGAA
1 ATTACTTTCTGAAGCGGAA
1088400 ATTACTTTCTGAAGCGGAA
1 ATTACTTTCTGAAGCGGAA
1088419 AT
1 AT
1088421 ACGAGTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (19 bp):
ATTACTTTCTGAAGCGGAA
Found at i:1093693 original size:2 final size:2
Alignment explanation
Indices: 1093686--1093715 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1093676 GATATGGTGA
1093686 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1093716 TAAATTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1096109 original size:20 final size:20
Alignment explanation
Indices: 1096084--1096139 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
1096074 GGTTGCGAAA
1096084 TCAAGTTGCAAAATTGGCGT
1 TCAAGTTGCAAAATTGGCGT
1096104 TCAAGTTGCAAAATTGGCGT
1 TCAAGTTGCAAAATTGGCGT
* *
1096124 TCGAGTTGCGAAATTG
1 TCAAGTTGCAAAATTG
1096140 ACGAATTCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (20 bp):
TCAAGTTGCAAAATTGGCGT
Found at i:1096151 original size:22 final size:20
Alignment explanation
Indices: 1096087--1096155 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
1096077 TGCGAAATCA
* * *
1096087 AGTTGCAAAATTGGCGTTCA
1 AGTTGCGAAATTGACGTTCG
* *
1096107 AGTTGCAAAATTGGCGTTCG
1 AGTTGCGAAATTGACGTTCG
1096127 AGTTGCGAAATTGACGAATTCG
1 AGTTGCGAAATTGACG--TTCG
1096149 AGTTGCG
1 AGTTGCG
1096156 GATTTTTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 33 0.75
22 11 0.25
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (20 bp):
AGTTGCGAAATTGACGTTCG
Found at i:1096358 original size:42 final size:40
Alignment explanation
Indices: 1096299--1096390 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 40
1096289 TGAAAACCGA
* *
1096299 GTTGCGAATTTGAAAACTGAGTTGCGAATTTGGGAAATTCAT
1 GTTGCGAATTTGAAAACTGAGTTACGAAATT-GG-AATTCAT
* * * *
1096341 GTTGCGAATTTGGAAACTGTGTTACGAAATTGGAGTTCGT
1 GTTGCGAATTTGAAAACTGAGTTACGAAATTGGAATTCAT
1096381 GTTGCGAATT
1 GTTGCGAATT
1096391 CGTTGGTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
40 15 0.34
41 2 0.05
42 27 0.61
ACGTcount: A:0.27, C:0.10, G:0.28, T:0.35
Consensus pattern (40 bp):
GTTGCGAATTTGAAAACTGAGTTACGAAATTGGAATTCAT
Found at i:1096368 original size:20 final size:20
Alignment explanation
Indices: 1096277--1096374 Score: 106
Period size: 20 Copynumber: 4.8 Consensus size: 20
1096267 ATCCGAATTC
* *
1096277 GAGTTGCGAATTTGAAAACC
1 GAGTTGCGAATTTGGAAACT
*
1096297 GAGTTGCGAATTTGAAAACT
1 GAGTTGCGAATTTGGAAACT
*
1096317 GAGTTGCGAATTTGGGAAATT
1 GAGTTGCGAATTT-GGAAACT
*
1096338 CATGTTGCGAATTTGGAAACT
1 GA-GTTGCGAATTTGGAAACT
* * *
1096359 GTGTTACGAAATTGGA
1 GAGTTGCGAATTTGGA
1096375 GTTCGTGTTG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
20 44 0.66
21 12 0.18
22 11 0.16
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.31
Consensus pattern (20 bp):
GAGTTGCGAATTTGGAAACT
Found at i:1097432 original size:20 final size:22
Alignment explanation
Indices: 1097396--1097447 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
1097386 CCGAAATAAT
*
1097396 AATAAAAATATGTTTTT-ATTC
1 AATAAAAAAATGTTTTTAATTC
*
1097417 AATAAAAAAATG-TTTTAATTG
1 AATAAAAAAATGTTTTTAATTC
1097438 AA-AAAAAAAT
1 AATAAAAAAAT
1097448 ATATAAAGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.37
Consensus pattern (22 bp):
AATAAAAAAATGTTTTTAATTC
Found at i:1100803 original size:32 final size:32
Alignment explanation
Indices: 1100743--1100803 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
1100733 TCAATTAGTA
* *
1100743 TTAATGACCATTTTGTACTAGTTTGATAAAAT
1 TTAATGACCATTTTGTACTAATTAGATAAAAT
*
1100775 TTAATGATCATTTTGTAAC-AATTAGATAA
1 TTAATGACCATTTTGT-ACTAATTAGATAA
1100804 GATCAACGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 23 0.92
33 2 0.08
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (32 bp):
TTAATGACCATTTTGTACTAATTAGATAAAAT
Found at i:1104403 original size:24 final size:22
Alignment explanation
Indices: 1104376--1104438 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 22
1104366 AGTTTTTCAG
1104376 TTATTTTTATAACAAAACATGTTT
1 TTATTTTTA-AACAAAACAT-TTT
* *
1104400 TTATTTATAAACAATACCATTTT
1 TTATTTTTAAACAA-AACATTTT
*
1104423 TAATTATTTAAACAAA
1 TTATT-TTTAAACAAA
1104439 TAACACCCGA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 13 0.39
24 20 0.61
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.46
Consensus pattern (22 bp):
TTATTTTTAAACAAAACATTTT
Found at i:1104423 original size:23 final size:23
Alignment explanation
Indices: 1104381--1104438 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
1104371 TTCAGTTATT
*
1104381 TTTAT-AACAAAACATGTTTTTA
1 TTTATAAACAAAACATGTTTTAA
*
1104403 TTTATAAACAATACCAT-TTTTAA
1 TTTATAAACAA-AACATGTTTTAA
*
1104426 TTATTTAAACAAA
1 TT-TATAAACAAA
1104439 TAACACCCGA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 5 0.17
23 13 0.43
24 12 0.40
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (23 bp):
TTTATAAACAAAACATGTTTTAA
Found at i:1106472 original size:17 final size:17
Alignment explanation
Indices: 1106448--1106488 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
1106438 CATTTAAATT
1106448 AATGATCAGATTGATAA
1 AATGATCAGATTGATAA
*
1106465 AGTGATCAGATTGATAA
1 AATGATCAGATTGATAA
1106482 AATGATC
1 AATGATC
1106489 TAACCTACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (17 bp):
AATGATCAGATTGATAA
Found at i:1107608 original size:24 final size:24
Alignment explanation
Indices: 1107575--1107640 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
1107565 AATTTAAAGT
**
1107575 ATATATAAATTATATATTTTTTAAA
1 ATATA-AAATTATATATTTAATAAA
* *
1107600 ATATAAAATTAAATAATTAATAAA
1 ATATAAAATTATATATTTAATAAA
*
1107624 ATATCTAAATTATATAT
1 ATAT-AAAATTATATAT
1107641 AAATTTAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
24 19 0.58
25 14 0.42
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
ATATAAAATTATATATTTAATAAA
Found at i:1112874 original size:38 final size:37
Alignment explanation
Indices: 1112785--1112874 Score: 119
Period size: 38 Copynumber: 2.4 Consensus size: 37
1112775 TCAGGTCGGG
1112785 TATATATATAT-ATTTAAATTAAATATATAAATATTA
1 TATATATATATAATTTAAATTAAATATATAAATATTA
* * * *
1112821 TATATATTTTTTAATTTAAATTAAATTTATTAATATTA
1 TATATA-TATATAATTTAAATTAAATATATAAATATTA
1112859 TATATATATAATAATT
1 TATATATAT-ATAATT
1112875 ATTTTTAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
36 6 0.13
37 5 0.11
38 34 0.76
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (37 bp):
TATATATATATAATTTAAATTAAATATATAAATATTA
Found at i:1114661 original size:25 final size:25
Alignment explanation
Indices: 1114593--1114673 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
1114583 GATAAGTTCA
* * *
1114593 GTTCGGGTTGGACCAGTACGGTTCG
1 GTTCGGGCTGGACCAGTTCGGTTTG
* **
1114618 ATTCGGGCTGGATAAGTTCGGTTTG
1 GTTCGGGCTGGACCAGTTCGGTTTG
* *
1114643 GTTCGGGCTGGACCGGTTCAGTTTG
1 GTTCGGGCTGGACCAGTTCGGTTTG
1114668 GTTCGG
1 GTTCGG
1114674 ACGAGTTTGG
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.11, C:0.17, G:0.40, T:0.32
Consensus pattern (25 bp):
GTTCGGGCTGGACCAGTTCGGTTTG
Found at i:1117373 original size:29 final size:29
Alignment explanation
Indices: 1117327--1117405 Score: 124
Period size: 29 Copynumber: 2.7 Consensus size: 29
1117317 TACTGCTACG
1117327 GGTGTTAGATCGAG-AAATATAATCTCACC
1 GGTGTTAGATCG-GTAAATATAATCTCACC
*
1117356 GGTGTTAGATCGGTAAATATAATCTGACC
1 GGTGTTAGATCGGTAAATATAATCTCACC
*
1117385 AGTGTTAGATCGGTAAATATA
1 GGTGTTAGATCGGTAAATATA
1117406 CCGATCACCG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
28 1 0.02
29 46 0.98
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (29 bp):
GGTGTTAGATCGGTAAATATAATCTCACC
Found at i:1133214 original size:43 final size:40
Alignment explanation
Indices: 1133166--1133244 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
1133156 GGGAAGTTCG
1133166 TTTATGTGCGTTTATTTATTAAATGAACGAACACGAACAAGAT
1 TTTATGTGCGTTTA---ATTAAATGAACGAACACGAACAAGAT
* *
1133209 TTTATGTTCGTTTAATTAAATGAACGAACATGAACA
1 TTTATGTGCGTTTAATTAAATGAACGAACACGAACA
1133245 TAGGTCTCGT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
40 21 0.62
43 13 0.38
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.35
Consensus pattern (40 bp):
TTTATGTGCGTTTAATTAAATGAACGAACACGAACAAGAT
Found at i:1133304 original size:24 final size:24
Alignment explanation
Indices: 1133276--1133337 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
1133266 CGTTCGTGAA
1133276 CGTTCAGTTATGTTCGTTTATGTT
1 CGTTCAGTTATGTTCGTTTATGTT
* *
1133300 TGTTCGGTTATGTTCGTTTATGTT
1 CGTTCAGTTATGTTCGTTTATGTT
* *
1133324 CATTCATTTATGTT
1 CGTTCAGTTATGTT
1133338 TAAGCCAATC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.13, C:0.11, G:0.19, T:0.56
Consensus pattern (24 bp):
CGTTCAGTTATGTTCGTTTATGTT
Found at i:1133975 original size:10 final size:10
Alignment explanation
Indices: 1133960--1134039 Score: 59
Period size: 10 Copynumber: 8.6 Consensus size: 10
1133950 GGTCTCCAAT
1133960 GTTTATGTTC
1 GTTTATGTTC
1133970 GTTTATGTTC
1 GTTTATGTTC
1133980 G----TGTTC
1 GTTTATGTTC
*
1133986 ATTTATGTTC
1 GTTTATGTTC
*
1133996 GTGTTCGTGTTC
1 GT-TT-ATGTTC
1134008 GTTTA---T-
1 GTTTATGTTC
*
1134014 GTTTGTGTTC
1 GTTTATGTTC
1134024 GTTTATGTTC
1 GTTTATGTTC
1134034 GTTTAT
1 GTTTAT
1134040 TTATTAAATG
Statistics
Matches: 54, Mismatches: 6, Indels: 20
0.68 0.08 0.25
Matches are distributed among these distances:
6 9 0.17
7 1 0.02
9 1 0.02
10 32 0.59
11 4 0.07
12 7 0.13
ACGTcount: A:0.09, C:0.10, G:0.23, T:0.59
Consensus pattern (10 bp):
GTTTATGTTC
Found at i:1133984 original size:16 final size:16
Alignment explanation
Indices: 1133965--1134035 Score: 70
Period size: 16 Copynumber: 4.1 Consensus size: 16
1133955 CCAATGTTTA
1133965 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
1133981 TGTTCATTTATGTTCGTGTTCG
1 TGTTCGTTTA------TGTTCG
*
1134003 TGTTCGTTTATGTTTG
1 TGTTCGTTTATGTTCG
1134019 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
1134035 T
1 T
1134036 TTATTTATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
16 30 0.67
22 15 0.33
ACGTcount: A:0.07, C:0.11, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:1134000 original size:22 final size:22
Alignment explanation
Indices: 1133975--1134025 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
1133965 TGTTCGTTTA
1133975 TGTTCGTGTTCATTTATGTTCG
1 TGTTCGTGTTCATTTATGTTCG
* *
1133997 TGTTCGTGTTCGTTTATGTTTG
1 TGTTCGTGTTCATTTATGTTCG
1134019 TGTTCGT
1 TGTTCGT
1134026 TTATGTTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.06, C:0.12, G:0.25, T:0.57
Consensus pattern (22 bp):
TGTTCGTGTTCATTTATGTTCG
Found at i:1134086 original size:21 final size:21
Alignment explanation
Indices: 1134060--1134104 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
1134050 AACGAACATG
1134060 AACAAGTTATATTCCTTAATA
1 AACAAGTTATATTCCTTAATA
1134081 AACAAGTTATATTCCTTAATA
1 AACAAGTTATATTCCTTAATA
1134102 AAC
1 AAC
1134105 GAACATGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.36
Consensus pattern (21 bp):
AACAAGTTATATTCCTTAATA
Found at i:1141738 original size:34 final size:34
Alignment explanation
Indices: 1141699--1141783 Score: 143
Period size: 34 Copynumber: 2.5 Consensus size: 34
1141689 CGATTATATA
*
1141699 TATATATATACTATTTTATACTTTTTATATTAAT
1 TATATATATAATATTTTATACTTTTTATATTAAT
*
1141733 TATATATATAATATTTTATATTTTTTATATTAAT
1 TATATATATAATATTTTATACTTTTTATATTAAT
*
1141767 TATATATAAAATATTTT
1 TATATATATAATATTTT
1141784 CGGGTTCGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (34 bp):
TATATATATAATATTTTATACTTTTTATATTAAT
Found at i:1141806 original size:20 final size:20
Alignment explanation
Indices: 1141776--1141813 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1141766 TTATATATAA
1141776 AATATTTTCGGGTTCGGGTAT
1 AATATTTTCGGG-TCGGGTAT
1141797 AATA-TTTCGGGTCGGGT
1 AATATTTTCGGGTCGGGT
1141814 TCGGGGACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.18, C:0.11, G:0.32, T:0.39
Consensus pattern (20 bp):
AATATTTTCGGGTCGGGTAT
Found at i:1142659 original size:30 final size:29
Alignment explanation
Indices: 1142572--1142660 Score: 106
Period size: 30 Copynumber: 3.0 Consensus size: 29
1142562 GGCTAAGTTG
* *
1142572 TAATTTGATTATAATAATTGATAAATTTAA
1 TAATTTAATTATAATAATTAATAAA-TTAA
*
1142602 TAATTTAATTATTATAATTAATAAATTAGA
1 TAATTTAATTATAATAATTAATAAATTA-A
* * *
1142632 TTATTTAGTTATCATAATTAATAAATTAA
1 TAATTTAATTATAATAATTAATAAATTAA
1142661 ACGATCTAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
29 4 0.08
30 48 0.92
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (29 bp):
TAATTTAATTATAATAATTAATAAATTAA
Found at i:1145754 original size:12 final size:12
Alignment explanation
Indices: 1145737--1145769 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
1145727 CCATTGGCGC
1145737 TCGTGAACAAGA
1 TCGTGAACAAGA
1145749 TCGTGAACAAGA
1 TCGTGAACAAGA
1145761 TCGTGAACA
1 TCGTGAACA
1145770 TAATACGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.18
Consensus pattern (12 bp):
TCGTGAACAAGA
Found at i:1146668 original size:3 final size:3
Alignment explanation
Indices: 1146660--1146757 Score: 178
Period size: 3 Copynumber: 32.7 Consensus size: 3
1146650 GAAAACAATG
1146660 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
1146708 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1146756 TA
1 TA
1146758 CCGGTTGTTA
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 92 1.00
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:1147128 original size:50 final size:50
Alignment explanation
Indices: 1147070--1147166 Score: 194
Period size: 50 Copynumber: 1.9 Consensus size: 50
1147060 TTTAGTCCCT
1147070 AACTCCACTATATTGAAAAAGATATAAGGAAAATGAGAACCGGGTAAGCG
1 AACTCCACTATATTGAAAAAGATATAAGGAAAATGAGAACCGGGTAAGCG
1147120 AACTCCACTATATTGAAAAAGATATAAGGAAAATGAGAACCGGGTAA
1 AACTCCACTATATTGAAAAAGATATAAGGAAAATGAGAACCGGGTAA
1147167 ACAATCTTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (50 bp):
AACTCCACTATATTGAAAAAGATATAAGGAAAATGAGAACCGGGTAAGCG
Found at i:1154882 original size:12 final size:12
Alignment explanation
Indices: 1154865--1154902 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
1154855 TGTAAATAAT
1154865 TATATATGTATA
1 TATATATGTATA
*
1154877 TATATATGTTTA
1 TATATATGTATA
*
1154889 TATATATATATA
1 TATATATGTATA
1154901 TA
1 TA
1154903 AATTTAAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (12 bp):
TATATATGTATA
Found at i:1155762 original size:59 final size:61
Alignment explanation
Indices: 1155653--1155772 Score: 149
Period size: 59 Copynumber: 2.0 Consensus size: 61
1155643 ATTGAAAGAC
* * * *
1155653 TATTTTATAATTTTTAATAATTGAAGAACTTAACAAAATAATTTTCTATAAT-AAA-AAAA
1 TATTTTATAAATTTTAATAATTGAAAAAATTAACAAAATAAATTTCTATAATGAAATAAAA
*
1155712 TATTTTATAAATTTTAATAATT-AAAAAATTCAATAAAATAACATTT-TATAATGAAATAAAA
1 TATTTTATAAATTTTAATAATTGAAAAAATT-AACAAAATAA-ATTTCTATAATGAAATAAAA
1155773 AAAGTTTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
58 6 0.12
59 36 0.69
60 6 0.12
61 4 0.08
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (61 bp):
TATTTTATAAATTTTAATAATTGAAAAAATTAACAAAATAAATTTCTATAATGAAATAAAA
Found at i:1156281 original size:2 final size:2
Alignment explanation
Indices: 1156270--1156306 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
1156260 AATATAAAAC
1156270 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1156307 TATGTGTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1157533 original size:15 final size:16
Alignment explanation
Indices: 1157515--1157544 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1157505 ATATTAATAA
1157515 TTTTTTTAT-TATTCT
1 TTTTTTTATATATTCT
1157530 TTTTTTTATATATTC
1 TTTTTTTATATATTC
1157545 AATTTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTTATATATTCT
Found at i:1157536 original size:16 final size:17
Alignment explanation
Indices: 1157515--1157559 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 17
1157505 ATATTAATAA
1157515 TTTTTTTAT-TATTC-T
1 TTTTTTTATATATTCAT
1157530 TTTTTTTATATATTCAAT
1 TTTTTTTATATATTC-AT
1157548 TTTATTTT-TATA
1 TTT-TTTTATATA
1157560 ATCTAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 9 0.35
16 5 0.19
18 8 0.31
19 4 0.15
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTTTATATATTCAT
Found at i:1159149 original size:13 final size:13
Alignment explanation
Indices: 1159131--1159168 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1159121 ACACAACCAC
1159131 GTGGAAGTTAAAT
1 GTGGAAGTTAAAT
1159144 GTGGAAGTTAAAT
1 GTGGAAGTTAAAT
1159157 GTGGAAG-TAAAT
1 GTGGAAGTTAAAT
1159169 AAAAGTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 5 0.20
13 20 0.80
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (13 bp):
GTGGAAGTTAAAT
Found at i:1159439 original size:21 final size:22
Alignment explanation
Indices: 1159413--1159466 Score: 87
Period size: 20 Copynumber: 2.6 Consensus size: 22
1159403 TATTATAGAT
1159413 AAAAT-ACTATTTTTTTTTTAC
1 AAAATAACTATTTTTTTTTTAC
1159434 AAAATAACTA--TTTTTTTTAC
1 AAAATAACTATTTTTTTTTTAC
1159454 AAAATAACTATTT
1 AAAATAACTATTT
1159467 ATATGAACGT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 20 0.67
21 5 0.17
22 5 0.17
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (22 bp):
AAAATAACTATTTTTTTTTTAC
Found at i:1173211 original size:15 final size:14
Alignment explanation
Indices: 1173188--1173218 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
1173178 TACAACACTA
1173188 AACTTTAATATAAT
1 AACTTTAATATAAT
1173202 AACTTATAATATAAT
1 AACTT-TAATATAAT
1173217 AA
1 AA
1173219 ACTAATAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AACTTTAATATAAT
Found at i:1173226 original size:16 final size:16
Alignment explanation
Indices: 1173193--1173239 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
1173183 CACTAAACTT
*
1173193 TAATATAAT-AACTTA
1 TAATATAATAAACTAA
1173208 TAATATAATAAACTAA
1 TAATATAATAAACTAA
*
1173224 TAA-ACTAACAAACTAA
1 TAATA-TAATAAACTAA
1173240 ACTTTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.30
Consensus pattern (16 bp):
TAATATAATAAACTAA
Found at i:1173505 original size:47 final size:47
Alignment explanation
Indices: 1173402--1173492 Score: 134
Period size: 45 Copynumber: 2.0 Consensus size: 47
1173392 CAACAAACAA
*
1173402 ATATAACTTAACTATTTAACTAACACAAACTAATTAAATAATTTTTTT
1 ATATAAC-TAACTATTTAACTAAAACAAACTAATTAAATAATTTTTTT
*
1173450 ATATAACTAACTA-TTAAC-AAAACAAACTAATT-AATTATTTTTT
1 ATATAACTAACTATTTAACTAAAACAAACTAATTAAATAATTTTTT
1173493 AACTATATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
44 10 0.24
45 13 0.32
46 5 0.12
47 6 0.15
48 7 0.17
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (47 bp):
ATATAACTAACTATTTAACTAAAACAAACTAATTAAATAATTTTTTT
Found at i:1173717 original size:27 final size:26
Alignment explanation
Indices: 1173678--1173728 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
1173668 AAAAAAATTA
1173678 CCTTATCTCCCTTTCTCCTTCTTTCTTT
1 CCTTATCTCCCTTTCT--TTCTTTCTTT
1173706 CCTT-TCTCCCTTTCTTTCTTTCT
1 CCTTATCTCCCTTTCTTTCTTTCT
1173729 CGGCTGCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.35
27 11 0.48
28 4 0.17
ACGTcount: A:0.02, C:0.39, G:0.00, T:0.59
Consensus pattern (26 bp):
CCTTATCTCCCTTTCTTTCTTTCTTT
Found at i:1173722 original size:21 final size:19
Alignment explanation
Indices: 1173687--1173729 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
1173677 ACCTTATCTC
1173687 CCTTTCTCCTTCTTTCTTT
1 CCTTTCTCCTTCTTTCTTT
1173706 CCTTTCTCC--CTTTCTTT
1 CCTTTCTCCTTCTTTCTTT
1173723 -CTTTCTC
1 CCTTTCTC
1173730 GGCTGCAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.29
17 8 0.33
19 9 0.38
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (19 bp):
CCTTTCTCCTTCTTTCTTT
Found at i:1173762 original size:23 final size:23
Alignment explanation
Indices: 1173732--1173777 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
1173722 TCTTTCTCGG
1173732 CTGCAATCTCTTCTCCCTTTCTT
1 CTGCAATCTCTTCTCCCTTTCTT
1173755 CTGCAATCTCTTCTCCCTTTCTT
1 CTGCAATCTCTTCTCCCTTTCTT
1173778 TCTTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.09, C:0.39, G:0.04, T:0.48
Consensus pattern (23 bp):
CTGCAATCTCTTCTCCCTTTCTT
Found at i:1173818 original size:25 final size:25
Alignment explanation
Indices: 1173790--1173841 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
1173780 TTTCTTTTAT
1173790 AACCGGCTGCCTCAATTATTTCACC
1 AACCGGCTGCCTCAATTATTTCACC
1173815 AACCGGCTGCCTCAATTATTTCACC
1 AACCGGCTGCCTCAATTATTTCACC
1173840 AA
1 AA
1173842 TAATTGTACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.35, G:0.12, T:0.27
Consensus pattern (25 bp):
AACCGGCTGCCTCAATTATTTCACC
Found at i:1174031 original size:13 final size:13
Alignment explanation
Indices: 1174013--1174044 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
1174003 GGCTGCATGT
1174013 GAATGGATGATGG
1 GAATGGATGATGG
1174026 GAATGGATGATGG
1 GAATGGATGATGG
1174039 GAATGG
1 GAATGG
1174045 CGCCGGGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.47, T:0.22
Consensus pattern (13 bp):
GAATGGATGATGG
Found at i:1174153 original size:29 final size:29
Alignment explanation
Indices: 1174045--1174135 Score: 173
Period size: 29 Copynumber: 3.1 Consensus size: 29
1174035 ATGGGAATGG
*
1174045 CGCCGGGACTACATGGCGACCTACAAGGT
1 CGCCGGGACCACATGGCGACCTACAAGGT
1174074 CGCCGGGACCACATGGCGACCTACAAGGT
1 CGCCGGGACCACATGGCGACCTACAAGGT
1174103 CGCCGGGACCACATGGCGACCTACAAGGT
1 CGCCGGGACCACATGGCGACCTACAAGGT
1174132 CGCC
1 CGCC
1174136 TAGGCTGCAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.23, C:0.35, G:0.31, T:0.11
Consensus pattern (29 bp):
CGCCGGGACCACATGGCGACCTACAAGGT
Found at i:1174201 original size:17 final size:17
Alignment explanation
Indices: 1174201--1174260 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 17
1174191 CGCTCGTATG
1174201 GCTCGCATGGGGAGAAC
1 GCTCGCATGGGGAGAAC
* *****
1174218 GCTCGTATGGCTCCTAC
1 GCTCGCATGGGGAGAAC
1174235 -CTCGCATGGGGAGAAC
1 GCTCGCATGGGGAGAAC
*
1174251 GCTCGTATGG
1 GCTCGCATGG
1174261 CTCGCATGGG
Statistics
Matches: 29, Mismatches: 13, Indels: 2
0.66 0.30 0.05
Matches are distributed among these distances:
16 10 0.34
17 19 0.66
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.20
Consensus pattern (17 bp):
GCTCGCATGGGGAGAAC
Found at i:1174212 original size:26 final size:26
Alignment explanation
Indices: 1174176--1174289 Score: 165
Period size: 26 Copynumber: 4.1 Consensus size: 26
1174166 GCATGCACAC
1174176 CTCGCATGGGGAGAACGCTCGTATGG
1 CTCGCATGGGGAGAACGCTCGTATGG
1174202 CTCGCATGGGGAGAACGCTCGTATGG
1 CTCGCATGGGGAGAACGCTCGTATGG
1174228 CTCCTACCTCGCATGGGGAGAACGCTCGTATGG
1 -------CTCGCATGGGGAGAACGCTCGTATGG
1174261 CTCGCATGGGGAGAACGCTCGTATGG
1 CTCGCATGGGGAGAACGCTCGTATGG
1174287 CTC
1 CTC
1174290 CTATGCATGG
Statistics
Matches: 81, Mismatches: 0, Indels: 14
0.85 0.00 0.15
Matches are distributed among these distances:
26 55 0.68
33 26 0.32
ACGTcount: A:0.18, C:0.26, G:0.35, T:0.20
Consensus pattern (26 bp):
CTCGCATGGGGAGAACGCTCGTATGG
Found at i:1174244 original size:33 final size:32
Alignment explanation
Indices: 1174176--1174341 Score: 157
Period size: 26 Copynumber: 5.5 Consensus size: 32
1174166 GCATGCACAC
1174176 CTCGCATGGGGAGAACGCTCGTATGG------
1 CTCGCATGGGGAGAACGCTCGTATGGCTCCTA
1174202 CTCGCATGGGGAGAACGCTCGTATGGCTCCTA
1 CTCGCATGGGGAGAACGCTCGTATGGCTCCTA
1174234 CCTCGCATGGGGAGAACGCTCGTATGG------
1 -CTCGCATGGGGAGAACGCTCGTATGGCTCCTA
1174261 CTCGCATGGGGAGAACGCTCGTATGGCTCCTA
1 CTCGCATGGGGAGAACGCTCGTATGGCTCCTA
*
1174293 -T-GCATGGGGAGAACTATTGGCTCGTATGGCTCGTA
1 CTCGCATGGGGAGAAC-----GCTCGTATGGCTCCTA
1174328 -T-GCATGGGGAGAAC
1 CTCGCATGGGGAGAAC
1174342 CATTGGCTCG
Statistics
Matches: 121, Mismatches: 1, Indels: 27
0.81 0.01 0.18
Matches are distributed among these distances:
26 52 0.43
30 13 0.11
31 1 0.01
33 26 0.21
35 29 0.24
ACGTcount: A:0.20, C:0.23, G:0.35, T:0.22
Consensus pattern (32 bp):
CTCGCATGGGGAGAACGCTCGTATGGCTCCTA
Found at i:1174245 original size:59 final size:59
Alignment explanation
Indices: 1174174--1174306 Score: 245
Period size: 59 Copynumber: 2.3 Consensus size: 59
1174164 CTGCATGCAC
1174174 ACCTCGCATGGGGAGAACGCTCGTATGGCTCGCATGGGGAGAACGCTCGTATGGCTCCT
1 ACCTCGCATGGGGAGAACGCTCGTATGGCTCGCATGGGGAGAACGCTCGTATGGCTCCT
1174233 ACCTCGCATGGGGAGAACGCTCGTATGGCTCGCATGGGGAGAACGCTCGTATGGCTCCT
1 ACCTCGCATGGGGAGAACGCTCGTATGGCTCGCATGGGGAGAACGCTCGTATGGCTCCT
1174292 A--T-GCATGGGGAGAAC
1 ACCTCGCATGGGGAGAAC
1174307 TATTGGCTCG
Statistics
Matches: 74, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
56 13 0.18
57 1 0.01
59 60 0.81
ACGTcount: A:0.20, C:0.26, G:0.35, T:0.20
Consensus pattern (59 bp):
ACCTCGCATGGGGAGAACGCTCGTATGGCTCGCATGGGGAGAACGCTCGTATGGCTCCT
Found at i:1174323 original size:35 final size:35
Alignment explanation
Indices: 1174277--1174364 Score: 158
Period size: 35 Copynumber: 2.5 Consensus size: 35
1174267 TGGGGAGAAC
* *
1174277 GCTCGTATGGCTCCTATGCATGGGGAGAACTATTG
1 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
1174312 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
1 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
1174347 GCTCGTATGGCTCGTATG
1 GCTCGTATGGCTCGTATG
1174365 TCACCCCGTA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 51 1.00
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.28
Consensus pattern (35 bp):
GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
Found at i:1174376 original size:12 final size:12
Alignment explanation
Indices: 1174359--1174400 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
1174349 TCGTATGGCT
1174359 CGTATGTCACCC
1 CGTATGTCACCC
*
1174371 CGTATGTCAACC
1 CGTATGTCACCC
1174383 CGTATGTCACCC
1 CGTATGTCACCC
1174395 CGTATG
1 CGTATG
1174401 GCCACCTCGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.19, C:0.36, G:0.19, T:0.26
Consensus pattern (12 bp):
CGTATGTCACCC
Found at i:1174443 original size:30 final size:32
Alignment explanation
Indices: 1174409--1174474 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 32
1174399 TGGCCACCTC
1174409 GCATGGGGAGAA-C-GCTCGTATGGCTCGTAT
1 GCATGGGGAGAACCTGCTCGTATGGCTCGTAT
1174439 GCATGGGGAGAACCATTGGCTCGTATGGCTCGTAT
1 GCATGGGGAGAACC--T-GCTCGTATGGCTCGTAT
1174474 G
1 G
1174475 TCAACCCGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
30 12 0.39
31 1 0.03
35 18 0.58
ACGTcount: A:0.20, C:0.20, G:0.36, T:0.24
Consensus pattern (32 bp):
GCATGGGGAGAACCTGCTCGTATGGCTCGTAT
Found at i:1176404 original size:3 final size:3
Alignment explanation
Indices: 1176396--1176421 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1176386 GTTTCTTTGT
1176396 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
1176422 GTAGTTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:1180746 original size:17 final size:17
Alignment explanation
Indices: 1180713--1180770 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
1180703 GGGTTCGAGC
*
1180713 TATAATATTAACA-ATAT
1 TATAATTTTAA-ATATAT
1180730 TATAATTTTAAATATAT
1 TATAATTTTAAATATAT
*
1180747 TTTAATTTATAAAT-TAT
1 TATAATTT-TAAATATAT
*
1180764 GATAATT
1 TATAATT
1180771 AATATCTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
16 1 0.03
17 29 0.83
18 5 0.14
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
TATAATTTTAAATATAT
Found at i:1182651 original size:2 final size:2
Alignment explanation
Indices: 1182644--1182676 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1182634 AAAAACTTTA
1182644 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1182677 ACTTCATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1199510 original size:424 final size:423
Alignment explanation
Indices: 1199020--1200705 Score: 3192
Period size: 423 Copynumber: 4.0 Consensus size: 423
1199010 TTTAGTTCGA
1199020 ACAAAAAAGATAACATTCACTAAAGCTATAGAAATACAATACAATCCAACAACCTAGGATTTGAG
1 ACAAAAAAGATAACATTCACTAAAGCTATAGAAATACAATACAATCCAACAACCTAGGATTTGAG
*
1199085 TAACCCTAAAATCATGCAAGTAACCTGAAATATATATAAAAAGAAATCGAGATTGGAAAACAGAA
66 TAACCCTAAAATCATGCAAGTAACCTGAAATATAT-GAAAAAGAAATCGAGATTGGAAAACAGAA
*
1199150 CAAGAAACAGCTAAACAATGGAGAAGATGAGATGGAAACAACACATGTGGTAGAGTTAGTTACTT
130 CAAGAAACAGCTAAACAATGGAGAAGATGAGATGGCAACAACACATGTGGTAGAGTTAGTTACTT
* *
1199215 GCAATTAGAATGAGCTAAAACGTTTTACTTAACCAAATCAACACTATATTCAAATATGTGCATTT
195 GCAATTAGAATGAGCTAAAACGTGTTACTTAACCAAATCAACACTATATTCAAATATGTGCATTC
*
1199280 GAGTGGGTTTTCAAACATAATCATCCAAAGCAAATGCAATATAATTCGAGATGAGTGGTAACGAT
260 GAGTGGGTTTTCAAACATAATCATCCAAAACAAATGCAATATAATTCGAGATGAGTGGTAACGAT
*
1199345 ATACAATTTATGACAACAACAACATCGAAATAAGAAAAGTACAAGATCAACTTTAGCTCAGTGAG
325 ATACAATTTATGACAACAACAACATCGAAAGAAGAAAAGTACAAGATCAACTTTAGCTCAGTGAG
1199410 ATATGTTACAAAAATTTCCAGAAGTTATAGAAAT
390 ATATGTTACAAAAATTTCCAGAAGTTATAGAAAT
*
1199444 ACAAAAAAGATAACATTCACTAAAGCTATAGAAATACAATGCAATCCAACAACCTAGGATTTGAG
1 ACAAAAAAGATAACATTCACTAAAGCTATAGAAATACAATACAATCCAACAACCTAGGATTTGAG
1199509 TAACCCTAAAATCATGCAAGTAACCTGAAATATATGAAAAAGAAATCGAGATTGGAAAACAGAAC
66 TAACCCTAAAATCATGCAAGTAACCTGAAATATATGAAAAAGAAATCGAGATTGGAAAACAGAAC
1199574 AAGAAACAGCTAAACAATGGAGAAGATGAGATGGCAACAACACATGTGGTAGAGTTAGTTACTTG
131 AAGAAACAGCTAAACAATGGAGAAGATGAGATGGCAACAACACATGTGGTAGAGTTAGTTACTTG
1199639 CAATTAGAATGAGCTAAAACGTGTTACTTAACCAAATCAACACTATATTCAAATATGTGCATTCG
196 CAATTAGAATGAGCTAAAACGTGTTACTTAACCAAATCAACACTATATTCAAATATGTGCATTCG
*
1199704 AGTGGGTTTTCAAACATAATCATCCAAAACAAATGCAATATAATTCGAGATGTGTGGTAACGATA
261 AGTGGGTTTTCAAACATAATCATCCAAAACAAATGCAATATAATTCGAGATGAGTGGTAACGATA
*
1199769 TACAATTTATGACAACAACAACATCGAAATAAGAAAAGTACAAGATCAACTTTAGCTCAGTGAGA
326 TACAATTTATGACAACAACAACATCGAAAGAAGAAAAGTACAAGATCAACTTTAGCTCAGTGAGA
1199834 TATGTTACAAAAATTTCCAGAAGTTATAGAAAT
391 TATGTTACAAAAATTTCCAGAAGTTATAGAAAT
*
1199867 ACAAAAAAGATAACATTCACTAAAGCTATAGAAATACAATGCAATCCAACAACCTAGGATTTGAG
1 ACAAAAAAGATAACATTCACTAAAGCTATAGAAATACAATACAATCCAACAACCTAGGATTTGAG
1199932 TAACCCTAAAATCATGCAAGTAACCTGAAATATATGAAAAAGAAATCGAGATTGGAAAACAGAAC
66 TAACCCTAAAATCATGCAAGTAACCTGAAATATATGAAAAAGAAATCGAGATTGGAAAACAGAAC
1199997 AAGAAACAGCTAAACAATGGAGAAGATGAGATGGCAACAACACATGTGGTAGAGTTAGTTACTTG
131 AAGAAACAGCTAAACAATGGAGAAGATGAGATGGCAACAACACATGTGGTAGAGTTAGTTACTTG
1200062 CAATTAGAATGAGCTAAAACGTGTTACTTAACCAAATCAACACTATATTCAAATATGTGCATTCG
196 CAATTAGAATGAGCTAAAACGTGTTACTTAACCAAATCAACACTATATTCAAATATGTGCATTCG
*
1200127 AGTGGGTTTTCAAACATAATCATCCAAAACAAATGCAATATAATTCGAGATGTGTGGTAACGATA
261 AGTGGGTTTTCAAACATAATCATCCAAAACAAATGCAATATAATTCGAGATGAGTGGTAACGATA
* *
1200192 TACAATTTATGACAACAACAACATCAAAAGAAGAAAAGAACAAGATCAACTTTAGCTCAGTGAGA
326 TACAATTTATGACAACAACAACATCGAAAGAAGAAAAGTACAAGATCAACTTTAGCTCAGTGAGA
1200257 TATGTTACAAAAATTTCCAGAAGTTATAGAAAT
391 TATGTTACAAAAATTTCCAGAAGTTATAGAAAT
*
1200290 ACAAAAAAGATAACATTCACTAAAGCAATAGAAATACAATACAATCCAACAACCTAGGATTTGAG
1 ACAAAAAAGATAACATTCACTAAAGCTATAGAAATACAATACAATCCAACAACCTAGGATTTGAG
1200355 TAACCCTAAAATCATGCAAGTAACCTGAAATATATGAAAAAGAAATCGAGATTGGAAAACAGAAC
66 TAACCCTAAAATCATGCAAGTAACCTGAAATATATGAAAAAGAAATCGAGATTGGAAAACAGAAC
1200420 AAGAAACAGCTAAACAATGGAGAAGATGAGATGGCAACAACACATGTGGTAGAGTTAGTTACTTG
131 AAGAAACAGCTAAACAATGGAGAAGATGAGATGGCAACAACACATGTGGTAGAGTTAGTTACTTG
1200485 CAATTAGAATGAGCTAAAACGTGTTACTTAACCAAATCAACACTATATTCAAATATGTGCATTCG
196 CAATTAGAATGAGCTAAAACGTGTTACTTAACCAAATCAACACTATATTCAAATATGTGCATTCG
* * *
1200550 AGTGGGTTTTCAAACATAATCATCCAAAGCAAATGCAATATACTTCGAGATGAGTGGCAACGATA
261 AGTGGGTTTTCAAACATAATCATCCAAAACAAATGCAATATAATTCGAGATGAGTGGTAACGATA
*
1200615 TACAATTTATGACAACAACATCATCGAAAGAAGAAAAGTACAAGATCAACTTTAGCTCAGTGAGA
326 TACAATTTATGACAACAACAACATCGAAAGAAGAAAAGTACAAGATCAACTTTAGCTCAGTGAGA
*
1200680 TATGATACAAAAATTTCCAGAAGTTA
391 TATGTTACAAAAATTTCCAGAAGTTA
1200706 AACAAATAAC
Statistics
Matches: 1242, Mismatches: 20, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
423 1143 0.92
424 99 0.08
ACGTcount: A:0.45, C:0.15, G:0.16, T:0.23
Consensus pattern (423 bp):
ACAAAAAAGATAACATTCACTAAAGCTATAGAAATACAATACAATCCAACAACCTAGGATTTGAG
TAACCCTAAAATCATGCAAGTAACCTGAAATATATGAAAAAGAAATCGAGATTGGAAAACAGAAC
AAGAAACAGCTAAACAATGGAGAAGATGAGATGGCAACAACACATGTGGTAGAGTTAGTTACTTG
CAATTAGAATGAGCTAAAACGTGTTACTTAACCAAATCAACACTATATTCAAATATGTGCATTCG
AGTGGGTTTTCAAACATAATCATCCAAAACAAATGCAATATAATTCGAGATGAGTGGTAACGATA
TACAATTTATGACAACAACAACATCGAAAGAAGAAAAGTACAAGATCAACTTTAGCTCAGTGAGA
TATGTTACAAAAATTTCCAGAAGTTATAGAAAT
Found at i:1202478 original size:34 final size:32
Alignment explanation
Indices: 1202418--1202487 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
1202408 CCTTATAAAC
* *
1202418 TCCCTAGTTTTTCCAGGCTAAACTAGAACCTT
1 TCCCTAGCTTTTACAGGCTAAACTAGAACCTT
*
1202450 TCCCTAGCTTTTACACGTGCTAAGCTAGAACCTT
1 TCCCTAGCTTTTACA-G-GCTAAACTAGAACCTT
1202484 TCCC
1 TCCC
1202488 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 13 0.39
33 1 0.03
34 19 0.58
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.33
Consensus pattern (32 bp):
TCCCTAGCTTTTACAGGCTAAACTAGAACCTT
Found at i:1202797 original size:21 final size:21
Alignment explanation
Indices: 1202771--1202812 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1202761 CCAGAATGGG
*
1202771 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
1202792 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
1202813 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:1202945 original size:19 final size:19
Alignment explanation
Indices: 1202895--1202953 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
1202885 GAGCCTCGGG
* *
1202895 TTACTGTTCAAACAGTGAT
1 TTACTGTTCAAATAGTAAT
*
1202914 TTATTGTTCAAATAGTAAT
1 TTACTGTTCAAATAGTAAT
1202933 TTACTGTTCAAATAGTTAAT
1 TTACTGTTCAAATAG-TAAT
1202953 T
1 T
1202954 ACTATTCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
19 30 0.86
20 5 0.14
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (19 bp):
TTACTGTTCAAATAGTAAT
Found at i:1202955 original size:19 final size:19
Alignment explanation
Indices: 1202895--1202961 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
1202885 GAGCCTCGGG
* * *
1202895 TTACTGTTCAAACAGTGAT
1 TTACTGTTCAAATAGTTAA
*
1202914 TTATTGTTCAAATAG-TAA
1 TTACTGTTCAAATAGTTAA
1202932 TTTACTGTTCAAATAGTTAA
1 -TTACTGTTCAAATAGTTAA
*
1202952 TTACTATTCA
1 TTACTGTTCA
1202962 TAAAAACATT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
18 1 0.03
19 36 0.90
20 3 0.08
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.43
Consensus pattern (19 bp):
TTACTGTTCAAATAGTTAA
Found at i:1203058 original size:29 final size:31
Alignment explanation
Indices: 1203026--1203084 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
1203016 AAATTTTGAA
*
1203026 TAAATTCAATT-AAGTCC-AAATACATTTTG
1 TAAATTCAATTCAAATCCAAAATACATTTTG
*
1203055 TAAATTCAATTCAAATCCAAAATCCATTTT
1 TAAATTCAATTCAAATCCAAAATACATTTT
1203085 ACCTTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 11 0.42
30 5 0.19
31 10 0.38
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.37
Consensus pattern (31 bp):
TAAATTCAATTCAAATCCAAAATACATTTTG
Found at i:1210411 original size:3 final size:3
Alignment explanation
Indices: 1210403--1210437 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
1210393 GAATTGGGTT
1210403 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1210438 TTGATAGTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:1217927 original size:37 final size:36
Alignment explanation
Indices: 1217826--1217929 Score: 93
Period size: 41 Copynumber: 2.8 Consensus size: 36
1217816 AAATGAATTG
* *
1217826 AATATAAATATTTTTAAAAATAAATAATAAACAAAA
1 AATATAAATATCTTTAAAAATAAATAACAAACAAAA
* * *
1217862 AATATAAATGTGACATTAAAAATTTAAATGAACAAA-AAATG
1 AATATAAATAT--CTTTAAAAA--TAAAT-AACAAACAAA-A
*
1217903 ATTATAAATATCTTTAAAAATAAATAA
1 AATATAAATATCTTTAAAAATAAATAA
1217930 ATAAACACAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
36 12 0.22
37 5 0.09
38 7 0.13
39 8 0.15
40 8 0.15
41 14 0.26
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (36 bp):
AATATAAATATCTTTAAAAATAAATAACAAACAAAA
Found at i:1220000 original size:31 final size:31
Alignment explanation
Indices: 1219965--1220030 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
1219955 TTCAATGACC
*
1219965 ATTTTACAACAATTGGATAAATTTAATGATA
1 ATTTTACAACAATTCGATAAATTTAATGATA
* * *
1219996 ATTTTATAATAATTCGATAAATTTAATGATT
1 ATTTTACAACAATTCGATAAATTTAATGATA
1220027 ATTT
1 ATTT
1220031 GTAACATTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (31 bp):
ATTTTACAACAATTCGATAAATTTAATGATA
Found at i:1224926 original size:19 final size:19
Alignment explanation
Indices: 1224898--1224946 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
1224888 ATACGTTTTC
1224898 ATGAACAGTACTATATAGT
1 ATGAACAGTACTATATAGT
* * *
1224917 ATGAATAGTATTATATTGT
1 ATGAACAGTACTATATAGT
*
1224936 ATTAACAGTAC
1 ATGAACAGTAC
1224947 CGTGAACAGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGAACAGTACTATATAGT
Found at i:1230919 original size:3 final size:3
Alignment explanation
Indices: 1230911--1230983 Score: 110
Period size: 3 Copynumber: 23.7 Consensus size: 3
1230901 TTTATCCATT
* *
1230911 TTA TTA TTA TTA TTA TTA TTA TTA GTA TTTA TTA TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
1230957 TTA TATA TTA TTA TTA TTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TTA TTA TT
1230984 TAATAAATAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
3 59 0.92
4 5 0.08
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:1230942 original size:22 final size:22
Alignment explanation
Indices: 1230911--1230985 Score: 116
Period size: 22 Copynumber: 3.5 Consensus size: 22
1230901 TTTATCCATT
1230911 TTATTA-TTATTATTATTATTA
1 TTATTATTTATTATTATTATTA
*
1230932 TTAGTATTTATTATTATTATTA
1 TTATTATTTATTATTATTATTA
* *
1230954 ATATTATATATTATTATTATTA
1 TTATTATTTATTATTATTATTA
1230976 TTATTATTTA
1 TTATTATTTA
1230986 ATAAATAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
21 5 0.11
22 42 0.89
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (22 bp):
TTATTATTTATTATTATTATTA
Found at i:1230942 original size:25 final size:25
Alignment explanation
Indices: 1230912--1230983 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 25
1230902 TTATCCATTT
1230912 TATTATTATTATTATTATTATTAGTA
1 TATTATTATTATTATTATTATTA-TA
*
1230938 T-TTATTATTATTATTAATATTATA
1 TATTATTATTATTATTATTATTATA
1230962 TATTATTATTATTATTATTATT
1 TATTATTATTATTATTATTATT
1230984 TAATAAATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
24 3 0.07
25 39 0.91
26 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (25 bp):
TATTATTATTATTATTATTATTATA
Found at i:1233015 original size:3 final size:3
Alignment explanation
Indices: 1233007--1233060 Score: 51
Period size: 3 Copynumber: 17.7 Consensus size: 3
1232997 TTCAAATTTT
1233007 TTA TTA TTA TTA TT- TTA TATA TTA TTA TTTA TTA TT- TTA TTTA TTTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA -TTA TTA TTA TTA -TTA -TTA
1233054 TT- TTA TT
1 TTA TTA TT
1233061 CAAGAATTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
2 6 0.13
3 26 0.58
4 13 0.29
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (3 bp):
TTA
Found at i:1233022 original size:15 final size:14
Alignment explanation
Indices: 1233004--1233060 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 14
1232994 TCTTTCAAAT
1233004 TTTTTATTATTATTA
1 TTTTTATT-TTATTA
*
1233019 TTTTATATATTATTA
1 TTTT-TATTTTATTA
1233034 TTTATTATTTTATT-
1 TTT-TTATTTTATTA
*
1233048 TATTTATTTTATT
1 TTTTTATTTTATT
1233061 CAAGAATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.27
14 2 0.05
15 21 0.57
16 4 0.11
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTATTTTATTA
Found at i:1233031 original size:12 final size:12
Alignment explanation
Indices: 1233006--1233060 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 12
1232996 TTTCAAATTT
1233006 TTTATTATTATTA
1 TTTATTATT-TTA
1233019 TTTTATATATTATTA
1 -TTTAT-TATT-TTA
1233034 TTTATTATTTTA
1 TTTATTATTTTA
1233046 TTTATTTATTTTA
1 TTTA-TTATTTTA
1233059 TT
1 TT
1233061 CAAGAATTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
12 7 0.18
13 14 0.36
14 10 0.26
15 8 0.21
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTATTATTTTA
Found at i:1233038 original size:28 final size:25
Alignment explanation
Indices: 1233006--1233060 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
1232996 TTTCAAATTT
1233006 TTTATTATTATTATTTTATATATTATTA
1 TTTATTATT-TTA-TTTATATATT-TTA
*
1233034 TTTATTATTTTATTTATTTATTTTA
1 TTTATTATTTTATTTATATATTTTA
1233059 TT
1 TT
1233061 CAAGAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.19
26 9 0.35
27 3 0.12
28 9 0.35
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (25 bp):
TTTATTATTTTATTTATATATTTTA
Found at i:1234662 original size:14 final size:14
Alignment explanation
Indices: 1234643--1234695 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
1234633 TTTTAAATAA
*
1234643 TTTACATTTACATT
1 TTTACATTTGCATT
*
1234657 TTTACATTTGCATA
1 TTTACATTTGCATT
1234671 TTTACATTTGGCATT
1 TTTACATTT-GCATT
*
1234686 TTTGCATTTG
1 TTTACATTTG
1234696 TATTGCACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.23, C:0.13, G:0.09, T:0.55
Consensus pattern (14 bp):
TTTACATTTGCATT
Found at i:1237949 original size:1 final size:1
Alignment explanation
Indices: 1237943--1237974 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
1237933 AAAGAAGAAG
*
1237943 AAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1237975 TTGAATCAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:1237956 original size:11 final size:11
Alignment explanation
Indices: 1237940--1237973 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
1237930 TGCAAAGAAG
1237940 AAGAAAAAAAA
1 AAGAAAAAAAA
1237951 AAGAAAAAAAA
1 AAGAAAAAAAA
1237962 AA-AAAAAAAA
1 AAGAAAAAAAA
1237972 AA
1 AA
1237974 ATTGAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:1237960 original size:14 final size:14
Alignment explanation
Indices: 1237937--1237974 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
1237927 ATCTGCAAAG
*
1237937 AAGAAGAAAAAAAA
1 AAGAAAAAAAAAAA
1237951 AAGAAAAAAAAAAA
1 AAGAAAAAAAAAAA
1237965 AA-AAAAAAAA
1 AAGAAAAAAAA
1237975 TTGAATCAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAAAAAA
Found at i:1240330 original size:83 final size:83
Alignment explanation
Indices: 1240182--1240363 Score: 303
Period size: 83 Copynumber: 2.2 Consensus size: 83
1240172 AATGGAACAA
*
1240182 ATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAAAACC
1 ATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGGTTTGGCAAAACC
1240247 AATCATTGAATTTAGAAG
66 AATCATTGAATTTAGAAG
* * *
1240265 ATGAATTTGTTCATAGCATCTTTTGGAAGTGTTCTTTGAGTTATCTAATCTGG-TTGGACAGAAC
1 ATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGGTTTGG-CAAAAC
*
1240329 CAATCATTGAATTTGGAAG
65 CAATCATTGAATTTAGAAG
1240348 ATGAATTTGCTCATAG
1 ATGAATTTGCTCATAG
1240364 TAGAAATAAG
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
82 4 0.04
83 88 0.96
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (83 bp):
ATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGGTTTGGCAAAACC
AATCATTGAATTTAGAAG
Found at i:1242602 original size:40 final size:40
Alignment explanation
Indices: 1242546--1242625 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
1242536 TGAGCAGAGT
1242546 CCACAGAAAAAGGATGAATGTGTTGTCAAATGTTTTACATC
1 CCACAGAAAAAGGATGAATGTGTTGTCAAATG-TTTACATC
*
1242587 CCACAG-AAAAGGATGAATGTGTTGTCAAGTGTTTACATC
1 CCACAGAAAAAGGATGAATGTGTTGTCAAATGTTTACATC
1242626 TAAGCTGAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 8 0.21
40 24 0.63
41 6 0.16
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (40 bp):
CCACAGAAAAAGGATGAATGTGTTGTCAAATGTTTACATC
Found at i:1243825 original size:113 final size:113
Alignment explanation
Indices: 1243416--1244516 Score: 1750
Period size: 113 Copynumber: 9.9 Consensus size: 113
1243406 GATTCAAATT
* * *
1243416 CATCATTTGGTGGATCATCATTACCAGAGAAGGTTCATAATGAGAAGAACTC--CT---GAAGGA
1 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1243476 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTA-CTGAATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
1243523 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1243588 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACC-TTTA-CTGAATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
1243634 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1243699 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
*
1243747 CATCATTTGGTGGATCATCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1243812 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
1243860 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAG-AGAACTCATCTGAAGAAGGA
1 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1243924 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACC-TTTACCTGAATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
1243971 CA-CA-TTGG-GGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA-G-
1 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1244031 -GAAGAAGTTCAT-ATGAGAAGAA-TTGTTCAACCTTTTA-CTGAATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
* * *
1244075 CATC-TTTGGTGGATCATCATTACCAGAGAAGGTTCATAATGAGAAGAACT-ATC-GAAGAAGGA
1 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1244137 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG-ATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
1244184 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1244249 AGAAGAAGTTCATAATGAGAAGAA-TTGTGTCAACCTTTTACCTGAATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGT-TCAACCTTTTACCTGAATC
*
1244297 CATCATTTGGTGGATCATTTTTTTTTCCAGAGAAAGTTCATAATGAGAAGAAACTCATCTGAAGA
1 CATCATTTGGTGGATCA---TCTTTTCCAGAGAAAGTTCATAATGAGAAG-AACTCATCTGAAGA
* * *** * *
1244362 A-GAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATT
62 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
* * * ** *
1244413 CATCATTTGATGGATCAACATGGCCAAAGAAAGTTCATGAATGAGAAGAACTCATCTGAAGAAGG
1 CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCAT-AATGAGAAGAACTCATCTGAAGAAGG
**
1244478 AAGAAGAAGGTTCATAATGAGAAG-AGCTGTTCAACCTTT
65 AAGAAGAA-GTTCATAATGAGAAGAATTTGTTCAACCTTT
1244517 GTTTGATATC
Statistics
Matches: 935, Mismatches: 28, Indels: 55
0.92 0.03 0.05
Matches are distributed among these distances:
104 25 0.03
105 23 0.02
106 49 0.05
107 61 0.07
108 44 0.05
109 45 0.05
110 48 0.05
111 132 0.14
112 148 0.16
113 212 0.23
114 30 0.03
115 15 0.02
116 84 0.09
117 19 0.02
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (113 bp):
CATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
Found at i:1244822 original size:3 final size:3
Alignment explanation
Indices: 1244810--1244873 Score: 80
Period size: 3 Copynumber: 21.7 Consensus size: 3
1244800 ATCCATTTTA
*
1244810 TAT TATT TAT TAT TAT T-G TAT TAT TAT TAT TAT TAAT TA- TAT TA-
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
1244854 TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
1244874 ATAAATAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
2 5 0.09
3 43 0.80
4 6 0.11
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:1244836 original size:26 final size:26
Alignment explanation
Indices: 1244810--1244873 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
1244800 ATCCATTTTA
*
1244810 TATTATTTATTATTATTGTATTATTAT
1 TATTATTTATTA-TATTATATTATTAT
*
1244837 TATTATTAATTATATTATATTATTAT
1 TATTATTTATTATATTATATTATTAT
1244863 TATTA-TTATTA
1 TATTATTTATTA
1244874 ATAAATAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 5 0.15
26 18 0.53
27 11 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (26 bp):
TATTATTTATTATATTATATTATTAT
Found at i:1244841 original size:20 final size:20
Alignment explanation
Indices: 1244807--1244873 Score: 86
Period size: 20 Copynumber: 3.4 Consensus size: 20
1244797 TTTATCCATT
1244807 TTATATTA-T-TTATTATTA
1 TTATATTATTATTATTATTA
*
1244825 TTGTATTATTATTATTATTAA
1 TTATATTATTATTATTATT-A
1244846 TTATATTA-TATTATTATTA
1 TTATATTATTATTATTATTA
1244865 TTATTATTA
1 TTA-TATTA
1244874 ATAAATAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.16
19 5 0.12
20 23 0.53
21 8 0.19
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (20 bp):
TTATATTATTATTATTATTA
Found at i:1244872 original size:29 final size:30
Alignment explanation
Indices: 1244810--1244875 Score: 100
Period size: 29 Copynumber: 2.2 Consensus size: 30
1244800 ATCCATTTTA
*
1244810 TATTATTTATTATTATTGTATTATTATTAT
1 TATTAATTATTATTATTGTATTATTATTAT
1244840 TATTAATTA-TATTATAT-TATTATTATTAT
1 TATTAATTATTATTAT-TGTATTATTATTAT
1244869 TATTAAT
1 TATTAAT
1244876 AAATAATTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 25 0.74
30 9 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (30 bp):
TATTAATTATTATTATTGTATTATTATTAT
Found at i:1256870 original size:6 final size:6
Alignment explanation
Indices: 1256861--1256895 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
1256851 AGAGAGAGGT
1256861 GGGGAC GGGGAC GGGGAC GGGGAC GGGGAC GGGGA
1 GGGGAC GGGGAC GGGGAC GGGGAC GGGGAC GGGGA
1256896 ACCGTTATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.14, G:0.69, T:0.00
Consensus pattern (6 bp):
GGGGAC
Found at i:1257052 original size:26 final size:28
Alignment explanation
Indices: 1257016--1257072 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 28
1257006 TAAAAATCTG
*
1257016 ATTTTGATTTAAT-TTGATA-TAAATAA
1 ATTTTGATTTAATAATGATATTAAATAA
* *
1257042 ATTTTTATTTAATAATGATATTAATTAA
1 ATTTTGATTTAATAATGATATTAAATAA
1257070 ATT
1 ATT
1257073 AAATTTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 12 0.46
27 5 0.19
28 9 0.35
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (28 bp):
ATTTTGATTTAATAATGATATTAAATAA
Found at i:1257854 original size:16 final size:18
Alignment explanation
Indices: 1257831--1257875 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
1257821 AGTTTTTTTT
1257831 ATAATTTTTAAAAAT-TA
1 ATAATTTTTAAAAATATA
**
1257848 A-AATTTTTCTAAATATA
1 ATAATTTTTAAAAATATA
1257865 ATAATTTTTAA
1 ATAATTTTTAA
1257876 GTTTTTTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
16 11 0.50
17 4 0.18
18 7 0.32
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
ATAATTTTTAAAAATATA
Done.