genome.fa.s2343.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002343.1 Hibiscus syriacus cultivar Beakdansim tig00004781_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146395

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702--740	19	2.0	21	90	10	64	56	0	7	35	1.28
4552--4632	23	3.6	22	75	8	74	27	24	23	24	2.00
7266--7427	66	2.5	64	86	4	227	31	21	16	30	1.96
8473--8632	80	2.0	79	96	1	293	29	22	4	43	1.72
29489--29558	2	35.0	2	100	0	140	50	0	0	50	1.00
29817--29846	2	15.0	2	100	0	60	50	0	0	50	1.00
34625--34670	24	1.9	24	86	0	65	36	10	4	47	1.58
35487--35540	26	2.0	28	85	10	76	29	0	3	66	1.09
37430--37477	6	8.0	6	83	0	51	39	0	27	33	1.57
37430--37477	15	3.2	15	84	0	60	39	0	27	33	1.57
37430--37462	12	2.8	12	95	0	57	42	0	24	33	1.55
38158--38189	13	2.5	13	95	5	57	6	15	12	65	1.44
41347--41440	30	3.1	30	98	0	179	18	3	41	37	1.66
42127--42211	16	5.5	15	73	21	70	67	1	0	31	0.99
42123--42221	25	4.3	23	74	16	73	65	2	0	32	1.04
42127--42187	32	1.9	32	83	6	79	68	1	0	29	0.99
42146--42207	23	2.7	24	78	14	67	69	0	0	30	0.89
42672--42712	17	2.3	18	87	4	66	48	0	2	48	1.14
42705--42732	2	14.0	2	100	0	56	50	0	0	50	1.00
42825--42878	15	3.6	14	76	18	56	31	0	1	66	1.02
42842--42908	16	4.2	16	75	16	59	35	1	1	61	1.15
42849--42930	24	3.3	25	77	13	64	39	2	1	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43037--43086	21	2.4	21	79	0	64	24	24	24	28	2.00
47043--47100	20	2.9	20	84	0	71	43	3	20	32	1.69
47062--47107	20	2.4	18	80	13	56	43	4	23	28	1.73
48485--48515	14	2.2	14	94	0	53	64	0	0	35	0.94
49560--49589	2	15.0	2	100	0	60	50	0	0	50	1.00
51875--51913	21	1.9	19	85	10	51	41	2	7	48	1.45
52370--52413	15	3.1	15	77	12	56	59	0	0	40	0.98
54933--55040	54	2.0	54	92	0	180	37	12	25	25	1.90
55056--55121	26	2.6	26	92	2	107	28	13	31	25	1.94
55370--55419	22	2.3	22	78	0	55	60	4	12	24	1.49
59268--59396	21	6.1	21	88	0	195	27	23	23	25	2.00
59268--59396	42	3.1	42	97	0	240	27	23	23	25	2.00
60359--60410	21	2.5	21	96	0	95	25	23	21	30	1.99
61031--61055	13	1.9	13	100	0	50	40	0	0	60	0.97
61167--61212	19	2.4	19	85	7	58	45	0	2	52	1.13
61173--61234	30	2.2	27	83	13	72	46	1	3	48	1.28
61492--61581	30	3.0	30	86	1	119	34	10	8	46	1.69
61640--61676	20	1.9	19	89	10	58	45	10	24	18	1.81
70063--70173	8	13.9	8	72	3	80	24	21	15	38	1.92
70214--70347	32	4.2	30	75	9	115	22	13	18	45	1.84
70129--70348	16	13.8	16	70	10	101	24	14	19	42	1.88
70225--70689	16	29.8	16	68	12	87	24	16	15	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70103--70568	24	19.6	24	72	9	195	24	15	16	42	1.87
70531--70689	8	19.9	8	72	7	81	23	19	13	43	1.87
70289--70709	24	17.4	24	72	7	179	24	16	15	42	1.87
70673--70727	24	2.3	24	80	0	65	29	10	21	38	1.88
70805--70928	59	2.1	59	80	4	142	49	11	11	28	1.73
77689--77752	3	21.3	3	93	6	112	68	0	0	31	0.90
78809--79186	85	4.5	85	83	0	497	24	17	21	35	1.95
78812--79186	169	2.2	170	85	1	511	25	18	21	35	1.95
81249--81335	14	6.9	12	83	8	77	2	12	5	79	1.00
81263--81344	42	2.0	42	85	9	114	2	13	4	79	1.00
81310--81349	16	2.5	15	84	11	53	0	12	7	80	0.91
81521--81574	2	27.0	2	100	0	108	50	0	0	50	1.00
91197--91412	108	2.0	108	87	3	310	31	7	15	45	1.74
93047--93114	27	2.5	27	100	0	136	27	19	17	35	1.94
102820--102870	25	2.0	26	84	3	68	43	1	0	54	1.11
102831--102926	42	2.3	41	86	8	140	45	1	1	52	1.14
102844--102921	23	3.6	23	70	19	76	47	1	1	50	1.17
108312--108352	2	20.5	2	100	0	82	51	0	0	48	1.00
111261--111318	29	2.0	29	83	6	73	50	0	1	48	1.11
111567--111639	20	3.7	20	74	18	71	64	2	4	28	1.26
112977--113051	3	25.0	3	79	5	62	56	0	0	44	0.99
112962--113051	18	4.5	18	78	21	83	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113196--113984	76	10.4	76	98	0	1499	34	21	19	24	1.96
113925--114279	185	1.9	185	92	1	595	40	14	13	31	1.84
114861--114915	22	2.5	22	93	0	101	40	14	10	34	1.81
117507--117730	115	2.0	114	88	0	331	30	18	16	34	1.93
121841--121910	36	1.9	36	82	5	88	54	8	18	18	1.68
124228--124276	17	2.8	16	79	14	53	65	2	0	32	1.04
125037--125075	16	2.4	17	87	8	55	38	0	0	61	0.96
125077--125152	20	3.7	20	71	25	59	64	2	3	28	1.25
125079--125130	14	3.5	14	75	14	50	69	1	1	26	1.10
125077--125130	17	3.4	17	75	15	60	68	1	1	27	1.10
126493--126568	3	25.3	3	77	5	55	53	2	0	43	1.14
126504--126568	18	3.7	18	81	6	71	52	1	0	46	1.10
132126--132175	23	2.1	24	92	7	84	32	26	20	22	1.98
132382--132430	24	2.0	24	88	0	71	34	16	0	48	1.46
134315--134346	8	4.0	8	91	0	55	15	25	0	59	1.36
136420--136469	23	2.1	24	92	7	84	32	26	20	22	1.98
137301--137350	19	2.6	19	100	0	100	26	32	12	30	1.92
145292--145755	208	2.2	210	87	6	669	50	7	11	29	1.67
145811--145878	6	11.7	6	87	6	95	20	16	11	51	1.75
145808--145883	18	4.3	18	85	6	93	22	15	10	51	1.74
145793--145883	6	15.2	6	84	8	60	24	16	8	50	1.73
145894--145957	20	3.2	19	73	22	60	40	3	1	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145901--145958	12	4.4	13	73	25	50	39	3	1	55	1.27
145942--146020	22	3.4	22	68	17	61	41	6	8	43	1.61
146039--146140	50	2.2	45	89	8	150	38	11	6	43	1.68
146172--146215	19	2.4	19	88	3	63	45	0	2	52	1.13

Tables:   1

The End!