genome.fa.s2344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002344.1 Hibiscus syriacus cultivar Beakdansim tig00004785_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91325

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3254--3555	147	2.0	146	88	8	452	29	9	21	39	1.85
6801--6834	2	17.0	2	100	0	68	50	0	0	50	1.00
17471--17567	30	3.3	29	76	13	110	26	35	11	26	1.90
17450--17682	57	4.0	57	70	13	215	25	35	13	25	1.93
17450--17535	27	3.1	27	70	15	84	25	36	15	23	1.94
17516--17607	45	2.0	45	87	0	130	25	38	9	27	1.87
17481--17943	132	3.6	131	84	8	657	28	36	10	24	1.88
17499--17724	117	1.9	117	95	0	407	26	35	12	25	1.91
17633--17856	45	5.0	45	73	7	206	30	37	8	23	1.84
17561--17757	75	2.7	75	80	5	197	27	37	11	23	1.90
17633--17696	15	4.3	15	67	15	51	28	35	10	25	1.89
17700--17815	30	4.0	29	77	11	121	31	37	6	23	1.81
17818--17943	30	4.3	30	80	9	152	29	37	7	25	1.84
17716--17918	102	2.0	100	80	9	223	28	37	9	24	1.86
17937--18018	15	5.5	15	76	0	74	8	42	20	28	1.81
17939--18018	30	2.7	30	96	0	142	8	43	21	26	1.81
23517--23595	22	3.6	22	81	1	97	30	21	26	21	1.98
25062--25284	105	2.1	104	82	2	259	23	16	21	38	1.93
25301--25346	24	2.0	24	86	4	67	23	26	26	23	2.00
29890--29922	2	16.5	2	100	0	66	51	0	0	48	1.00
37579--37616	2	19.0	2	100	0	76	50	0	0	50	1.00
39073--39155	29	2.8	29	92	1	139	40	12	14	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43836--43918	29	2.8	29	92	1	139	39	13	15	31	1.86
45448--45522	31	2.5	31	86	6	109	41	17	13	28	1.87
48986--49448	112	4.1	112	91	0	730	45	12	14	26	1.82
49318--49767	182	2.5	181	88	1	648	44	11	14	28	1.81
50392--50439	23	2.1	23	88	0	69	41	16	4	37	1.68
57054--57166	56	2.0	56	87	3	165	28	21	21	29	1.98
58266--58388	58	2.2	56	81	8	142	19	24	12	43	1.85
62717--62768	7	7.4	7	82	8	70	13	28	55	1	1.49
63866--63919	20	2.7	19	75	8	63	33	31	18	16	1.93
63906--64038	20	6.5	20	70	14	74	36	21	19	21	1.95
63969--64243	20	13.6	20	74	10	168	38	25	18	18	1.93
63969--64246	40	6.9	40	78	10	221	37	25	18	18	1.93
64293--64345	21	2.5	21	81	6	63	22	26	18	32	1.97
65219--65272	24	2.2	24	93	0	90	20	18	20	40	1.91
65904--66117	20	10.6	20	77	6	216	19	18	24	37	1.94
65906--66102	40	4.9	41	88	3	301	19	17	24	38	1.93
65906--66117	41	5.2	40	87	1	289	19	17	24	37	1.94
66126--66178	20	2.7	20	76	5	54	16	16	22	43	1.88
66228--66281	20	2.7	19	75	8	63	16	18	31	33	1.93
72793--72830	19	2.0	20	89	5	60	52	2	34	10	1.50
84202--84250	23	2.1	23	84	0	62	30	26	16	26	1.97
84278--84318	21	1.9	22	85	5	57	51	12	2	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85088--85130	20	2.2	20	83	8	52	76	0	11	11	1.02

Tables:   1

The End!