Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002345.1 Hibiscus syriacus cultivar Beakdansim tig00004787_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72833

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11569--11595
10
2.7
10
100
0
54
22
0
33
44
1.53
16041--16526
162
3.0
163
95
1
852
37
11
19
30
1.88
16942--17723
258
3.0
259
95
1
1415
32
16
13
37
1.88
22833--23398
141
4.0
142
95
0
1019
27
21
10
40
1.86
22833--23398
283
2.0
283
98
0
1105
27
21
10
40
1.86
28909--28985
31
2.5
31
91
0
127
44
7
6
41
1.59
29324--29383
29
2.0
30
90
6
95
35
6
15
43
1.72
29463--29561
21
4.8
20
81
10
119
23
36
19
21
1.95
29496--29561
13
4.8
14
72
18
50
22
36
19
21
1.95
29582--29636
20
2.8
20
94
5
94
20
27
21
30
1.98
37018--37077
30
2.0
30
87
6
86
36
6
13
43
1.70
37167--37221
20
2.6
21
77
11
60
21
34
21
21
1.97
37408--37447
20
1.9
21
85
10
55
37
37
10
15
1.80
40602--40690
29
3.0
29
93
3
142
34
7
15
41
1.76
40887--40943
21
2.7
21
100
0
114
22
24
28
24
2.00
41065--41103
21
1.9
21
94
5
71
38
41
10
10
1.73
41318--41387
34
2.1
32
86
5
95
31
15
30
22
1.95
41623--41747
30
4.1
31
84
3
137
38
8
12
40
1.73
41633--41760
61
2.1
61
81
7
152
37
8
14
39
1.76
41623--41760
31
4.5
28
81
12
96
38
8
13
39
1.75
44761--44901
74
1.9
72
88
2
210
40
18
17
24
1.91

Tables:   1

The End!