Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002346.1 Hibiscus syriacus cultivar Beakdansim tig00004788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 176006
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 2 of 2
Found at i:146283 original size:21 final size:21
Alignment explanation
Indices: 146208--146283 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
146198 CGCGTTGCGA
*
146208 TTCTCTCGTTGCGCTTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
146229 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
146249 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
146270 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
146284 CTCTTCTGCA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 17 0.37
21 29 0.63
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:146410 original size:33 final size:33
Alignment explanation
Indices: 146363--146433 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
146353 AATACTAACT
* *
146363 TGAAAATCGGAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
146396 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
146429 TGAAA
1 TGAAA
146434 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:146667 original size:22 final size:22
Alignment explanation
Indices: 146615--146669 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
146605 TGGTTGTGAG
*
146615 GGATTTCGTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
146637 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
146659 GGATTTCTTCG
1 GGATTTCTTCG
146670 CCGTAGAGAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.20, C:0.15, G:0.40, T:0.25
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:146840 original size:20 final size:20
Alignment explanation
Indices: 146815--146988 Score: 208
Period size: 20 Copynumber: 8.7 Consensus size: 20
146805 CTTTAAATAT
146815 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
146835 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
146857 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
146876 TGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
146896 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
146916 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
146936 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
146956 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
146976 CGCGTTGCGATTT
1 CGCGTTGCGATTT
146989 TGGAAAATCG
Statistics
Matches: 131, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
19 2 0.02
20 112 0.85
21 15 0.11
22 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:146980 original size:60 final size:60
Alignment explanation
Indices: 146817--146988 Score: 236
Period size: 60 Copynumber: 2.9 Consensus size: 60
146807 TTAAATATCG
** **
146817 CGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATATG
1 CGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATACA
* * *** *
146878 CGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATACA
1 CGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATACA
*
146938 CGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTT
146989 TGGAAAATCG
Statistics
Matches: 94, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
60 68 0.72
61 26 0.28
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (60 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATACA
Found at i:147005 original size:21 final size:21
Alignment explanation
Indices: 146975--147057 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
146965 ATTTATGTGT
*
146975 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
146996 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
147017 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
147038 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
147058 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:159125 original size:10 final size:10
Alignment explanation
Indices: 159110--159142 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
159100 AGTACACAAA
159110 AAAAAAAACT
1 AAAAAAAACT
159120 AAAAAAAACT
1 AAAAAAAACT
159130 AAAAAAAACT
1 AAAAAAAACT
159140 AAA
1 AAA
159143 GAGAAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (10 bp):
AAAAAAAACT
Found at i:163217 original size:2 final size:2
Alignment explanation
Indices: 163210--163278 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
163200 GTTCAATCAC
163210 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
163252 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
163279 CTCCTTAATG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:165030 original size:354 final size:355
Alignment explanation
Indices: 163993--165059 Score: 2041
Period size: 355 Copynumber: 3.0 Consensus size: 355
163983 TGCTTCATCT
163993 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAA-TTACTGAATTTTTCTC
1 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
164057 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
66 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGG-TT
164122 TTTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAAT
130 TTTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAAT
164187 CAATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCG
195 CAATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCG
164252 CTGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACG
260 CTGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACG
*
164317 TTATAAGGAATGTCATCAAGCGATTTGATTC
325 TTATCAGGAATGTCATCAAGCGATTTGATTC
164348 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
1 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
164413 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
66 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
164478 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAATC
131 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAATC
164543 AATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCGC
196 AATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCGC
164608 TGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACGT
261 TGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACGT
164673 TATCAGGAATGTCATCAAGCGATTTGATTC
326 TATCAGGAATGTCATCAAGCGATTTGATTC
*
164703 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCA-TTTTGAGGAAAATTTACTGATTTTTTCTC
1 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
164767 TCCTGAAAGAAACAAAGGGAAGATGAAGAA-TTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
66 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
*
164831 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTTGTCTCGAAATCTTACTTTCCCGAGCAAT
131 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATC-TACTTTCCCGAGCAAT
* *
164896 CAATTTTCTTTCTTTACAAGATCGTTTTACCCTTCGTCGAGGCTTCTCGACTCCACTCTCTGCCG
195 CAATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCG
*
164961 CTGCTCCAATACTTCTCCCGATAGTAATTTCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACG
260 CTGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACG
165026 TTATCAGGAATGTCATCAAGCGATTTGATTC
325 TTATCAGGAATGTCATCAAGCGATTTGATTC
165057 CTA
1 CTA
165060 CATGAACCCT
Statistics
Matches: 704, Mismatches: 6, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
353 81 0.12
354 235 0.33
355 310 0.44
356 78 0.11
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (355 bp):
CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAATC
AATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCGC
TGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACGT
TATCAGGAATGTCATCAAGCGATTTGATTC
Found at i:169690 original size:21 final size:20
Alignment explanation
Indices: 169664--169712 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
169654 ACTATCGCAA
*
169664 TGCGATTTTCCAATTTCACGT
1 TGCGATTTTCCAA-TTCACAT
* *
169685 TGCGATTTTCCCATTCGCAT
1 TGCGATTTTCCAATTCACAT
169705 TGCGATTT
1 TGCGATTT
169713 ACGTATTTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.43
Consensus pattern (20 bp):
TGCGATTTTCCAATTCACAT
Found at i:169709 original size:20 final size:21
Alignment explanation
Indices: 169658--169712 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
169648 ATTATGACTA
*
169658 TCGCAATGCGATTTTCCAATT
1 TCGCATTGCGATTTTCCAATT
* * *
169679 TCACGTTGCGATTTTCCCA-T
1 TCGCATTGCGATTTTCCAATT
169699 TCGCATTGCGATTT
1 TCGCATTGCGATTT
169713 ACGTATTTGC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAATT
Found at i:169782 original size:21 final size:20
Alignment explanation
Indices: 169739--169830 Score: 114
Period size: 20 Copynumber: 4.5 Consensus size: 20
169729 ATTTCATAAT
169739 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
169759 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
169780 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATACGTAAA
* *
169800 TCGCAATGCGAAT-CTTACTA
1 TCGCAATGCGAATACGTA-AA
169820 TCGCAATGCGA
1 TCGCAATGCGA
169831 TTTACATAAC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
19 2 0.03
20 43 0.68
21 18 0.29
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:170377 original size:19 final size:19
Alignment explanation
Indices: 170332--170379 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
170322 TTCGAGAATG
*
170332 AAAATCGCAACGCGGAAAT
1 AAAATCGCAACGCGGAAAC
*
170351 AACTATCGCAACGC-GAAACC
1 AA-AATCGCAACGCGGAAA-C
170371 AAAATCGCA
1 AAAATCGCA
170380 TTGCGATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.46, C:0.27, G:0.17, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGGAAAC
Found at i:170417 original size:19 final size:19
Alignment explanation
Indices: 170375--170520 Score: 96
Period size: 19 Copynumber: 8.1 Consensus size: 19
170365 GAAACCAAAA
*
170375 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
170394 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
170413 TCGCGTTGTGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
170427 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
170446 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
170460 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
170479 TCAGCGTTGCGATTCTCATT
1 TC-GCGTTGCGATTTTCATT
** *
170499 AGGTCGTTACGATTTTCATT
1 TCG-CGTTGCGATTTTCATT
170519 TC
1 TC
170521 AACCAAAAGA
Statistics
Matches: 97, Mismatches: 18, Indels: 23
0.70 0.13 0.17
Matches are distributed among these distances:
14 19 0.20
16 4 0.04
17 5 0.05
19 41 0.42
20 28 0.29
ACGTcount: A:0.14, C:0.22, G:0.21, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:170445 original size:33 final size:33
Alignment explanation
Indices: 170397--170495 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 33
170387 TTTCATTTCG
** *
170397 CGTTGCGATTTTCATTTCGCGTTGTGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
170430 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
170463 CGTTGCGATAGTCATTTCAGCGTTGCGATTCTC
1 CGTTGCGATAGTCATTTC-GCGTTGCGATTCTC
170496 ATTAGGTCGT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
33 48 0.77
34 14 0.23
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.41
Consensus pattern (33 bp):
CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
Found at i:170635 original size:25 final size:26
Alignment explanation
Indices: 170581--170635 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
170571 ATTTGTTTAT
* *
170581 TGTTTTTGGTATATATTCACATTGTA
1 TGTTTTTGGTATATACTAACATTGTA
170607 -GTTTTTGGTATAT-CTAAC-TTGGTA
1 TGTTTTTGGTATATACTAACATT-GTA
170631 TGTTT
1 TGTTT
170636 ATTGTTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 2 0.08
24 6 0.24
25 17 0.68
ACGTcount: A:0.20, C:0.07, G:0.18, T:0.55
Consensus pattern (26 bp):
TGTTTTTGGTATATACTAACATTGTA
Found at i:172629 original size:18 final size:18
Alignment explanation
Indices: 172606--172647 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
172596 AGAGTCCACT
*
172606 CCTATCGTTGAAGAGGCC
1 CCTATCGTTGAAGAGGCA
172624 CCTATCGTTGAAGAGGCA
1 CCTATCGTTGAAGAGGCA
172642 CCTATC
1 CCTATC
172648 ATTCCTCGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (18 bp):
CCTATCGTTGAAGAGGCA
Found at i:174073 original size:14 final size:14
Alignment explanation
Indices: 174054--174089 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
174044 ATTGTTTAAT
174054 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
174068 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
174082 TGATTTGT
1 TGATTTGT
174090 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:174253 original size:18 final size:18
Alignment explanation
Indices: 174210--174249 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
174200 AATGTGAATG
174210 AAAATCGCAACGCGAAAC
1 AAAATCGCAACGCGAAAC
174228 AAAATCGC-ACGCGAAAC
1 AAAATCGCAACGCGAAAC
*
174245 TAAAT
1 AAAAT
174250 TCGCGTTGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.50, C:0.25, G:0.15, T:0.10
Consensus pattern (18 bp):
AAAATCGCAACGCGAAAC
Found at i:174288 original size:33 final size:33
Alignment explanation
Indices: 174246--174344 Score: 130
Period size: 33 Copynumber: 3.0 Consensus size: 33
174236 ACGCGAAACT
*
174246 AAATTCGCGTTGCGATTTTCATTTCGCGTTGCG
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
*
174279 AAATTCGCGTT-CTGATTTTTATTTCGCATTGCG
1 AAATTCGCGTTGC-GATTTTCATTTCGCATTGCG
* *
174312 -ATTCTCTCGTTGCGATTTTCATTTCGCATTGCG
1 AAAT-TCGCGTTGCGATTTTCATTTCGCATTGCG
174345 TAAGTTTTTG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
32 3 0.05
33 54 0.93
34 1 0.02
ACGTcount: A:0.15, C:0.21, G:0.20, T:0.43
Consensus pattern (33 bp):
AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
Done.