genome.fa.s2348.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002348.1 Hibiscus syriacus cultivar Beakdansim tig00004790_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82412

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3271--3357	2	43.5	2	85	13	117	50	0	3	45	1.18
4479--4582	37	2.8	37	88	0	145	33	11	12	42	1.79
5314--6793	106	14.0	106	90	2	2126	22	17	25	34	1.96
7621--7675	22	2.5	22	93	0	101	25	12	25	36	1.91
8293--8339	13	3.7	13	82	2	60	0	8	2	89	0.57
8293--8353	27	2.3	26	83	11	70	0	13	4	81	0.83
11549--11586	19	2.1	19	90	5	60	71	0	21	7	1.11
12697--12793	37	2.6	37	85	0	131	30	12	15	41	1.84
15200--15641	222	2.0	222	92	0	742	27	20	14	38	1.91
17478--17526	25	1.9	26	83	4	64	51	14	4	30	1.61
17985--18021	2	18.5	2	100	0	74	0	48	0	51	1.00
22285--22448	81	2.0	81	92	0	274	23	28	19	29	1.98
28866--28931	27	2.4	28	85	5	82	45	33	6	15	1.70
28916--29012	30	3.2	30	80	4	97	40	22	8	28	1.83
28937--29012	31	2.4	32	84	6	102	39	21	6	32	1.79
31192--31221	13	2.4	13	94	5	53	56	0	0	43	0.99
33034--33092	23	2.6	23	88	0	82	40	15	5	38	1.69
33507--33569	23	2.7	23	90	0	90	39	15	4	39	1.69
33987--34049	23	2.7	23	92	0	99	38	17	4	39	1.71
34468--34530	23	2.7	23	92	0	99	38	20	4	36	1.74
32629--36676	482	8.5	482	97	1	7450	40	10	7	41	1.68
34949--35004	23	2.4	23	90	0	94	37	21	3	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35429--35484	23	2.4	23	90	0	94	37	21	3	37	1.71
32629--36676	962	4.2	961	96	0	7463	40	10	7	41	1.68
35912--35974	23	2.7	23	85	0	81	38	17	4	39	1.71
36389--36451	23	2.7	23	92	0	99	38	20	4	36	1.74
36483--37183	228	3.1	227	94	4	1208	39	8	7	44	1.63
39269--39572	167	1.8	166	99	0	599	48	4	7	38	1.53
41442--41496	20	2.8	20	94	0	92	30	16	16	36	1.91
43637--43690	18	3.0	18	91	0	90	20	31	27	20	1.97
45855--45901	19	2.5	19	89	0	67	23	19	12	44	1.85
47888--47958	18	3.9	18	90	0	115	23	32	23	19	1.98
51048--51122	35	2.1	35	87	0	105	42	24	1	32	1.63
51119--51220	35	2.9	35	94	1	170	40	0	15	44	1.47
57567--57623	29	2.0	29	92	0	96	21	36	33	8	1.84
69841--69977	42	3.3	42	94	2	242	20	19	24	35	1.96
69816--69980	21	8.0	21	75	11	144	21	20	23	33	1.97
70217--70436	21	10.6	21	71	13	168	33	23	20	21	1.97
70203--70412	42	5.0	42	94	1	361	34	22	20	22	1.97
70454--70506	21	2.5	21	90	0	79	18	20	30	30	1.97
76129--76190	20	3.1	20	88	0	97	25	27	17	29	1.98
76363--76419	22	2.6	22	88	0	87	21	42	15	21	1.89
76767--76813	19	2.5	19	100	0	94	44	23	21	10	1.83
76827--76880	20	2.7	19	72	8	54	14	14	24	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77024--77076	20	2.7	20	96	0	97	24	20	28	26	1.99
78036--78351	35	9.1	35	87	1	359	22	21	19	36	1.95
78036--78341	139	2.2	139	86	2	429	22	21	19	35	1.96

Tables:   1

The End!