Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002349.1 Hibiscus syriacus cultivar Beakdansim tig00004791_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57912
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Found at i:12613 original size:31 final size:31
Alignment explanation
Indices: 12577--12635 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
12567 AACTTAAAAG
* *
12577 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
12608 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
12636 CCATACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:12711 original size:22 final size:22
Alignment explanation
Indices: 12662--12710 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
12652 ATAAATTATT
**
12662 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
12684 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCCATA-TAA
12707 TAAA
1 TAAA
12711 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:12714 original size:54 final size:54
Alignment explanation
Indices: 12650--13969 Score: 611
Period size: 54 Copynumber: 24.4 Consensus size: 54
12640 ACAACTACAA
12650 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
* ** *
12704 TAATAAATTATTTAAAATAAATCAATTCATACAATTACAATAATAAATCAATTTATA-
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCTATAC
** * ** * ** **
12761 TTTTAAAATAAAT-CAATTCATACTAATAAAT-TATTTAAAATAAATCAATCTATA-
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCTATAC
** * * * ** * * **
12815 TTTTAAAATAAATCAATCTATATTAATAAAT-TATTTAAAATAAATCAAT-TCATAC
1 TAAT-AAATTATTTAAAATAAATCAATCCATAT-TTTAAAATAAATCAATCT-ATAC
* * **
12870 TAATAAATTATTTAAAATAAATCAATCCAAACAACTACAATAATAAATCAATCTATA-
1 TAATAAATTATTTAAAATAAATCAATCC--A-TATTTTAA-AATAAATCAATCTATAC
** * ** * ** ** *
12927 TTTTAAAATAAAT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCTATAC
*
12982 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
*
13036 TAATAAATTATTTAAAATAAATTAATCCATATTTTAAAATAAATCAAT-TCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCT-ATAC
* * *
13090 TAATAAATTATTTAAAATAAATCAATCAATATTTTAAAATAAATCAATCAATAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
*** * * *
13144 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT-AATAAATCAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCTATAC
* * * * * * ** *
13197 T-AT--A-T-TTTAAAATAAATCAATCTATA-CTAATAAATTATTTAAAATA-AA
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTA-AAATAAATCAATCTATAC
** * * * * *
13245 TCAATCCA-TATTTTAAAATAAATCAATCCATA--CT--AATAAAT-TATTTAAAA
1 T-AATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
* * *
13295 TAAATCAATCCATATTTTGAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCC
1 T-AATAAAT---TA-TTTAAAATAAATCAATC----C--AT--A-T-TTTAAAATAAATCAATCT
13360 ATAC
51 ATAC
* *
13364 -AACTACA--A--T--AATAAACCAATCCATATTTTAAAATAAATCAATCTATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
*
13412 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
13466 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
* * *** * * *
13520 TAATAAATTATTTAAAGTAAATCAATCGATACAACTACAAT-AATAAATC-A-AT
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCTATAC
* * * * * *
13572 TCAT--A-T-TTTAAAATAAATCAATCCATA--CT--AATAAAT-TATTTAAAA
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
* ** * *
13617 TAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT-C
1 T-AATAAAT---TA-TTTAAAATAAATCAATCCATA-TTTTAAA--A--T-AAATCAATCTATAC
* * * * *
13681 T-AT--A-T-TTTAAAATAAATCAATTCATA--TT--AATAAAT-TATTTAAAA
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
* * ** * **
13725 TAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTATTTAAAATAAATAAAT-C
1 T-AATAAAT---TA-TTTAAAATAAATCAATCCATA-TTTTAAA--A--T-AAATCAATCTATAC
* * * * * * *
13789 TATTCAACTA--CAATAATAAACCAATCCACATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAA-AATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
13842 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
* * *
13896 TAATAAATTATTTAAAATAAATCAATCCATATTTTATAATAAAT-TAT-TTTA-
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
*
13947 AAATAAATTATTTTAAAATAAAT
1 TAATAAATTA-TTTAAAATAAAT
13970 AACCTTATTA
Statistics
Matches: 979, Mismatches: 173, Indels: 230
0.71 0.13 0.17
Matches are distributed among these distances:
43 8 0.01
44 9 0.01
45 5 0.01
46 5 0.01
47 4 0.00
48 71 0.07
49 9 0.01
50 19 0.02
51 10 0.01
52 37 0.04
53 14 0.01
54 580 0.59
55 36 0.04
56 21 0.02
57 35 0.04
58 62 0.06
59 3 0.00
60 6 0.01
61 2 0.00
62 3 0.00
63 8 0.01
64 10 0.01
65 6 0.01
66 1 0.00
67 2 0.00
68 9 0.01
69 4 0.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
Found at i:12791 original size:22 final size:23
Alignment explanation
Indices: 12716--12790 Score: 73
Period size: 22 Copynumber: 3.2 Consensus size: 23
12706 ATAAATTATT
12716 TAAAATAAATCAATTCATAC-AA
1 TAAAATAAATCAATTCATACTAA
* **
12738 TTACAATAATAAATCAATTTATA-TTT
1 -T--AA-AATAAATCAATTCATACTAA
12764 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATTCATACTAA
12787 TAAA
1 TAAA
12791 TTATTTAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
22 15 0.37
23 8 0.20
25 3 0.07
26 15 0.37
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAAATAAATCAATTCATACTAA
Found at i:12820 original size:22 final size:22
Alignment explanation
Indices: 12794--12838 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
12784 TAATAAATTA
12794 TTTAAAATAAATCAATCTATAT
1 TTTAAAATAAATCAATCTATAT
12816 TTTAAAATAAATCAATCTATAT
1 TTTAAAATAAATCAATCTATAT
12838 T
1 T
12839 AATAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (22 bp):
TTTAAAATAAATCAATCTATAT
Found at i:12845 original size:22 final size:22
Alignment explanation
Indices: 12792--12844 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
12782 ACTAATAAAT
12792 TATT-TAAAATAAATCAATCTA
1 TATTATAAAATAAATCAATCTA
*
12813 TATTTTAAAATAAATCAATCTA
1 TATTATAAAATAAATCAATCTA
12835 TATTAATAAA
1 TATT-ATAAA
12845 TTATTTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 4 0.14
22 21 0.72
23 4 0.14
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTATAAAATAAATCAATCTA
Found at i:12858 original size:14 final size:14
Alignment explanation
Indices: 12839--12891 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
12829 AATCTATATT
12839 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
12853 AATAAATCAATTCATACT
1 AATAAAT-TATT--TA-A
12871 AATAAATTATTTAA
1 AATAAATTATTTAA
12885 AATAAAT
1 AATAAAT
12892 CAATCCAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:13018 original size:22 final size:22
Alignment explanation
Indices: 12992--13034 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
12982 TAATAAATTA
12992 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
13014 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
13035 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:13043 original size:22 final size:22
Alignment explanation
Indices: 12994--13042 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
12984 ATAAATTATT
**
12994 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
13016 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
13039 TAAA
1 TAAA
13043 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:13061 original size:22 final size:22
Alignment explanation
Indices: 13036--13079 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
13026 CAATCCATAC
13036 TAATAAAT-TATTTAAAATAAAT
1 TAATAAATAT-TTTAAAATAAAT
**
13058 TAATCCATATTTTAAAATAAAT
1 TAATAAATATTTTAAAATAAAT
13080 CAATTCATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
TAATAAATATTTTAAAATAAAT
Found at i:13079 original size:188 final size:185
Alignment explanation
Indices: 12880--13926 Score: 1395
Period size: 188 Copynumber: 5.6 Consensus size: 185
12870 TAATAAATTA
* * *
12880 TTTAAAATAAATCAATCCAAAC-AACTACA-A-T-AATAAATCAATCTATATTTTAAAATAAATC
1 TTTAAAATAAATCAATCCATACTAA-TAAATATTAAATAAATCAATCCATATTTTAAAATAAATC
*
12941 AATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATC
65 AATCTATACTAATAAATTATTTAAAATAAATCAATCCATAC-AACTAAA--A--T--AATAAATC
*
13005 AATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATTAATCCATAT
123 AATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
* *
13068 TTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCAATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA-TT-AAATAAATCAATCCATATTTTAAAATAAA
* * * *
13133 TCAATCAATATTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCT
63 TCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATACAACTAAAATAATAAATCAATCC
*
13198 ATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATAT
128 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
*
13256 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTGAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA-TT-AAATAAATCAATCCATATTTTAAAATAAA
* *
13321 TCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAACCAATCC
63 TCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATACAACTAAAATAATAAATCAATCC
*
13386 ATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATAT
128 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
13444 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA-TT-AAATAAATCAATCCATATTTTAAAATAAA
* * * *
13509 TCAATCTATACTAATAAATTATTTAAAGTAAATCAATCGATACAACTACAATAATAAATCAATTC
63 TCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATACAACTAAAATAATAAATCAATCC
13574 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
128 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
*
13632 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA-TT-AAATAAATCAATCCATATTTTAAAATAAA
* *** *
13697 TCAAT-TCATATTAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAAT-ACA
63 TCAATCT-ATACTAATAAATTATTTAAAATAAATCAATCCATACAACTAAAAT-AATAAATCA-A
* * * * * *
13759 TACTAATAAATTATTTAAAATAAAT-AA---AT-CTATTCAACTA--CAATAATAAACCAATCCA
125 T-C-CAT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAA-AATAAATCAATCCA
*
13817 CAT
183 TAT
13820 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA-TT-AAATAAATCAATCCATATTTTAAAATAAA
13885 TCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATA
63 TCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATA
13927 TTTTATAATA
Statistics
Matches: 798, Mismatches: 42, Indels: 38
0.91 0.05 0.04
Matches are distributed among these distances:
187 9 0.01
188 681 0.85
189 11 0.01
190 6 0.01
192 3 0.00
193 5 0.01
194 83 0.10
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (185 bp):
TTTAAAATAAATCAATCCATACTAATAAATATTAAATAAATCAATCCATATTTTAAAATAAATCA
ATCTATACTAATAAATTATTTAAAATAAATCAATCCATACAACTAAAATAATAAATCAATCCATA
TTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
Found at i:13088 original size:22 final size:22
Alignment explanation
Indices: 13046--13088 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
13036 TAATAAATTA
*
13046 TTTAAAATAAATTAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
13068 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
13089 CTAATAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:13126 original size:22 final size:22
Alignment explanation
Indices: 13100--13144 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
13090 TAATAAATTA
13100 TTTAAAATAAATCAATCAATAT
1 TTTAAAATAAATCAATCAATAT
13122 TTTAAAATAAATCAATCAATAT
1 TTTAAAATAAATCAATCAATAT
13144 T
1 T
13145 AATAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (22 bp):
TTTAAAATAAATCAATCAATAT
Found at i:13151 original size:22 final size:22
Alignment explanation
Indices: 13098--13150 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
13088 ACTAATAAAT
13098 TATT-TAAAATAAATCAATCAA
1 TATTATAAAATAAATCAATCAA
*
13119 TATTTTAAAATAAATCAATCAA
1 TATTATAAAATAAATCAATCAA
13141 TATTAATAAA
1 TATT-ATAAA
13151 TTATTTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 4 0.14
22 21 0.72
23 4 0.14
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.36
Consensus pattern (22 bp):
TATTATAAAATAAATCAATCAA
Found at i:13231 original size:22 final size:22
Alignment explanation
Indices: 13156--13230 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
13146 ATAAATTATT
* *
13156 TAAAATAAATCAATCCATACAA
1 TAAAATAAATCAATCTATATAA
**
13178 CTACAATAATAAATCAATCTATATTT
1 -T--AA-AATAAATCAATCTATATAA
13204 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCTATA-TAA
13227 TAAA
1 TAAA
13231 TTATTTAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 16 0.38
23 8 0.19
25 3 0.07
26 15 0.36
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCTATATAA
Found at i:13260 original size:22 final size:22
Alignment explanation
Indices: 13234--13276 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
13224 TAATAAATTA
13234 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
13256 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
13277 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:13281 original size:242 final size:242
Alignment explanation
Indices: 12745--13939 Score: 1152
Period size: 242 Copynumber: 4.9 Consensus size: 242
12735 CAATTACAAT
** *
12745 AATAAATCAATTTATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
* * *
12810 CTATATTTTAAAATAAATCAATCTATATTAATAAATTATTTAAAATAAATCAATTCATACTAATA
66 CCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAA-TC-CA-T-ATA
* * * **
12875 AATTATTTAAAATAAATCAAT-CCAA-ACAACTA---CAATAATAAATCAATCTATA-TTTTAAA
127 AA--A--T-AAAT-AATCAATACCAATA-AATTATTTTAA-AATAAATCAATCCATACTAATAAA
* *
12934 -A-TAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAA
184 TATTAAATAAATCAAT-CT-AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAA
*
12997 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATTAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
*
13062 CCATATTTTAAAATAAATCAAT-TCATACTAATAAATTATTTAAAATAAATCAATCAATATTTTA
66 CCATATTTTAAAATAAATCAATCT-ATACTAATAAATTATTTAAAATAAATCAATCCATA---TA
** *
13126 AAATAAATCAATCAATATTAATAAATTA-TTTAAAATAAATCAATCCATAC-AACTACA-A-T-A
127 AAATAAAT-AATCAATACCAATAAATTATTTTAAAATAAATCAATCCATACTAA-TAAATATTAA
*
13186 ATAAATCAATCTATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAA
190 ATAAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
13239 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
* * *
13304 CCATATTTTGAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATA-CAACT
66 CCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATATAAAAT
** *
13368 ACAATAAT-AA-ACCAATCCA-TATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAAT
131 A-AATAATCAATACCAATAAATTATTTTAAAATAAATCAATCCATACTAATAAA-TA-TT-AAAT
*
13430 AAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
192 AAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
* *
13481 AATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAGTAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
* *** * * * *
13546 CGATACAACTACAAT-AATAAATC-A-ATTCAT--A-T-TTTAAAATAAATCAATCCATACT--A
66 CCATA-TTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATA-TAAA
* * * ** *
13602 ATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTT
129 ATAAA-TAATCAATACCAATAAAT---TATTTTAAAATAAATCAATCCATACTAATAAA-TA-TT
* *
13667 AAAATAAATCAATCTATATTTTAAAATAAATCAATTCATATTAATAAATTATTTAA
188 -AAATAAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
* *
13723 AATAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTATTTAAAATAAATAAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
* * * * *
13788 -C-TA--TTCAACTACAAT-AA--TAAACCAATCCACA-T-TTTAAAATAAATCAATCCATACT-
66 CCATATTTTAAAATA-AATCAATCTATACTAAT--AAATTATTTAAAATAAATCAATCCATA-TA
* * * ** * *
13843 -AATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTAT
127 AAATAAA-TAATCAATACCAATAAAT---TATTTTAAAATAAATCAATCCATACTAATAAA-TA-
* *
13907 TTAAAATAAATCAATCCATATTTTATAATAAAT
186 TT-AAATAAATCAATCTATATTTTAAAATAAAT
13940 TATTTTAAAA
Statistics
Matches: 838, Mismatches: 67, Indels: 86
0.85 0.07 0.09
Matches are distributed among these distances:
235 4 0.00
236 56 0.07
237 11 0.01
238 20 0.02
239 6 0.01
240 7 0.01
241 1 0.00
242 551 0.66
243 6 0.01
244 1 0.00
246 13 0.02
247 9 0.01
248 26 0.03
249 9 0.01
250 1 0.00
251 7 0.01
252 110 0.13
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.35
Consensus pattern (242 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
CCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATATAAAAT
AAATAATCAATACCAATAAATTATTTTAAAATAAATCAATCCATACTAATAAATATTAAATAAAT
CAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
Found at i:13285 original size:22 final size:22
Alignment explanation
Indices: 13236--13284 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
13226 ATAAATTATT
**
13236 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
13258 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
13281 TAAA
1 TAAA
13285 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:13339 original size:22 final size:22
Alignment explanation
Indices: 13292--13339 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
13282 AAATTATTTA
**
13292 AAATAAATCAATCCATATTTTG
1 AAATAAATCAATCCATATAATG
*
13314 AAATAAATCAATCTATACTAAT-
1 AAATAAATCAATCCATA-TAATG
13336 AAAT
1 AAAT
13340 TATTTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.33
Consensus pattern (22 bp):
AAATAAATCAATCCATATAATG
Found at i:13448 original size:22 final size:22
Alignment explanation
Indices: 13422--13464 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
13412 TAATAAATTA
13422 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
13444 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
13465 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:13473 original size:22 final size:22
Alignment explanation
Indices: 13424--13472 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
13414 ATAAATTATT
**
13424 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
13446 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
13469 TAAA
1 TAAA
13473 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:13527 original size:22 final size:22
Alignment explanation
Indices: 13478--13526 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
13468 ATAAATTATT
**
13478 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
13500 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCCATA-TAA
13523 TAAA
1 TAAA
13527 TTATTTAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:13636 original size:22 final size:22
Alignment explanation
Indices: 13610--13652 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
13600 TAATAAATTA
13610 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
13632 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
13653 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:13661 original size:22 final size:22
Alignment explanation
Indices: 13612--13660 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
13602 ATAAATTATT
**
13612 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
13634 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
13657 TAAA
1 TAAA
13661 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:13680 original size:134 final size:133
Alignment explanation
Indices: 12650--13680 Score: 701
Period size: 134 Copynumber: 7.6 Consensus size: 133
12640 ACAACTACAA
12650 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTAT
* ** *
12715 TTAAAATAAATCAATTCATACAATTACAA-TAATAAATCAATTTATATTTTAAAATAAATCAATT
66 TTAAAATAAATCAA-TCATACAA-TAAAATTAATAAATCAATCCATATTTTAAAATAAATCAATC
12779 CATAC
129 CATAC
* *
12784 TAATAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCTATATTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTAT
* *** *
12849 TTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCAAACAACTACAAT-AA
66 TTAAAATAAATCAA-TCATAC-AATAAA--A-TT--AATAAATCAATCCATA-TTTTAAAATAAA
* *
12913 TAAATCAAT-C
123 TCAATCCATAC
*
12923 T-AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACT
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCTATACT
*** * * * *
12983 AATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATT
56 AATAAATTATTTAAAATAAATCAAT-CATACAATAAAATTAATAAATCAAT-C-CAT--A-T-TT
* *
13048 TAAAATAAATTAATCCATATTT
114 TAAAATAAATCAATCCATA--C
* * * * *
13070 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATC-A---AT-C-AAT--A-
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAAT
* *** *
13121 T-TTTAAAATAAATCAATCAATATTAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT
63 TATTTAAAATAAATCAATC-ATA-CAATAAA--A-TT--AATAAATCAATCCATA-TTTTAAAAT
* *
13185 -AATAAATCAAT-C
120 AAATCAATCCATAC
** * * * * *
13197 T-AT--A-T-TTTAAAATAAATCAAT-C-TATACT--AATAAAT-TATTTAAAATAAATCAATCC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACT-AATAAAT--
*
13252 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTGAAA
63 -TA-TTTAAAATAAATCAAT-CATAC-AATAAA--A-TT--AATAAATCAATCCATATTTTAAAA
*
13317 TAAATCAATCTATAC
119 TAAATCAATCCATAC
* * * * **
13332 TAATAAATTATTTAAAATAAATCAATCCATA----CAACTACAAT-AA--TAAACCAATCCA-TA
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATA-AATCAATCTATACTAATAAATTA
13389 TTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAA
65 -TTTAAAATAAATCAATC-ATAC-AATAAA--A-TT--AATAAATCAATCCATATTTTAAAATAA
13454 ATCAATCCATAC
122 ATCAATCCATAC
13466 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTAT
* * *
13531 TTAAAGTAAATCAATCGATACAACTACAA-TAATAAATCAATTCATATTTTAAAATAAATCAATC
66 TTAAAATAAATCAATC-ATACAA-TAAAATTAATAAATCAATCCATATTTTAAAATAAATCAATC
13595 CATAC
129 CATAC
*
13600 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTAT
13665 TTAAAATAAATCAATC
66 TTAAAATAAATCAATC
13681 TATATTTTAA
Statistics
Matches: 725, Mismatches: 87, Indels: 170
0.74 0.09 0.17
Matches are distributed among these distances:
119 5 0.01
120 14 0.02
121 2 0.00
122 2 0.00
123 1 0.00
124 2 0.00
126 3 0.00
127 1 0.00
128 1 0.00
129 1 0.00
130 28 0.04
131 11 0.02
132 3 0.00
133 6 0.01
134 390 0.54
135 9 0.01
136 16 0.02
137 3 0.00
138 25 0.03
139 11 0.02
140 88 0.12
141 13 0.02
142 4 0.01
143 12 0.02
144 58 0.08
145 1 0.00
147 1 0.00
150 2 0.00
152 1 0.00
154 6 0.01
155 5 0.01
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.35
Consensus pattern (133 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTAT
TTAAAATAAATCAATCATACAATAAAATTAATAAATCAATCCATATTTTAAAATAAATCAATCCA
TAC
Found at i:13715 original size:22 final size:22
Alignment explanation
Indices: 13662--13714 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
13652 ACTAATAAAT
13662 TATT-TAAAATAAATCAATCTA
1 TATTATAAAATAAATCAATCTA
*
13683 TATTTTAAAATAAATCAAT-TCA
1 TATTATAAAATAAATCAATCT-A
13705 TATTAATAAA
1 TATT-ATAAA
13715 TTATTTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 19 0.68
23 4 0.14
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTATAAAATAAATCAATCTA
Found at i:13744 original size:22 final size:22
Alignment explanation
Indices: 13718--13760 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
13708 TAATAAATTA
*
13718 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATACATAT
13740 TTTAAAATAAATCAATACATA
1 TTTAAAATAAATCAATACATA
13761 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATACATAT
Found at i:13769 original size:22 final size:22
Alignment explanation
Indices: 13720--13768 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
13710 ATAAATTATT
* **
13720 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATACATATAA
13742 TAAAATAAATCAATACATACTAA
1 TAAAATAAATCAATACATA-TAA
13765 TAAA
1 TAAA
13769 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATACATATAA
Found at i:13846 original size:134 final size:134
Alignment explanation
Indices: 13669--13922 Score: 438
Period size: 134 Copynumber: 1.9 Consensus size: 134
13659 AATTATTTAA
* * * * *
13669 AATAAATCAATCTATATTTTAAAATAAATCAATTCATATTAATAAATTATTTAAAATAAATCAAT
1 AATAAACCAATCCACATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
13734 CCATATTTTAAAATAAATCAATAC-ATACTAATAAATTATTTAAAATAAATAAATCTATTCAACT
66 CCATATTTTAAAATAAATCAAT-CTATACTAATAAATTATTTAAAATAAATAAATCTATTCAACT
13798 ACAAT
130 ACAAT
13803 AATAAACCAATCCACATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAACCAATCCACATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
*
13868 CCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATC
66 CCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATAAATC
13923 CATATTTTAT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
133 1 0.01
134 112 0.99
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (134 bp):
AATAAACCAATCCACATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
CCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATAAATCTATTCAACTA
CAAT
Found at i:13861 original size:32 final size:32
Alignment explanation
Indices: 13820--13954 Score: 137
Period size: 32 Copynumber: 4.4 Consensus size: 32
13810 CAATCCACAT
13820 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
13852 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
13874 TTTAAAATAAATCAATCTATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
13906 TTTAAAATAAATCAATCCATATTTTATAATAAATTA
1 TTTAAAATAAATCAATCCATA----CTAATAAATTA
13942 TTTTAAAATAAAT
1 -TTTAAAATAAAT
13955 TATTTTAAAA
Statistics
Matches: 85, Mismatches: 3, Indels: 25
0.75 0.03 0.22
Matches are distributed among these distances:
22 16 0.19
23 1 0.01
24 1 0.01
26 3 0.04
28 3 0.04
30 1 0.01
31 2 0.02
32 36 0.42
36 10 0.12
37 12 0.14
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:13903 original size:22 final size:22
Alignment explanation
Indices: 13854--13902 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
13844 ATAAATTATT
**
13854 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
13876 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCCATA-TAA
13899 TAAA
1 TAAA
13903 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:13917 original size:166 final size:164
Alignment explanation
Indices: 12665--13954 Score: 505
Period size: 166 Copynumber: 7.9 Consensus size: 164
12655 AATTATTTAA
* *
12665 AATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
* * * *
12730 TCATAC-AATTACAATAA--T-AAATCAAT--TTATATTTTAAAATAAATCAATTCATACTAATA
66 CCATACTAA-TA-AATAATCTAAAATAAATAAATCTATTTTAAAATAAATCAA-TCATACTAATA
* * *** *
12789 AATTATTTAAAATAAATCAAT-CTATA-TTTTAAAAT
128 AATTATTTAAAATAAATCAATCCCAAACAACTACAAT
* *
12824 AAATCAATCTATAT-TAATAAATTATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAAT
1 -AATAAATC-A-ATCT-AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
* * * *
12888 AAATCAATCCAAAC-AACTACAATAA--T-AAATCAAT--CTATATTTTAAAATAAATCAATCCA
58 AAATCAATCCATACTAA-TA-AATAATCTAAAATAAATAAATCTATTTTAAAATAAATCAAT-CA
* *
12947 TACTAATAAATTATTTAAAATAAATCAAT-CCATACTAA-TAAATTATTT
120 TACTAATAAATTATTTAAAATAAATCAATCCCAAAC-AACTACA--A--T
* *
12995 AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATTA
1 --AATAAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
** *
13060 ATCCATA-TTTTAAAATAAATC-AATTCATACTAATAAAT-TA-TTTAAAATAAATCAATCAATA
64 ATCCATACTAAT-AAAT-AATCTAA--AATA--AATAAATCTATTTTAAAATAAATCAATC-ATA
** * *** * *
13121 -TTTTAAA--A--T-AAATCAATCAATATTAATA-AATTATTTAA-
122 CTAATAAATTATTTAAAATAAATCAATCCCAA-ACAACTA--CAAT
* *** * * *
13159 AATAAATCAATCCATACAACTACAAT-AATAAATCAAT-CT-AT--A-T-TTTAAAATAAATCAA
1 AATAAATCAATCTATA-TTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAA
* * * *
13217 TCTATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAAT
65 TCCATACTAATAAATAATCTAAAATAAATAAAT-C-TATTTTAAAATAAATCAAT-CATACTAAT
* ***
13282 AAATTATTTAAAATAAATCAAT-CCATA-TTTTGA-AAT
127 AAATTATTTAAAATAAATCAATCCCAAACAACT-ACAAT
* * *
13318 AAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATAC-AACTACA--A--T--AAT
1 -AATAAATCAAT-CT-AT--A-T-TTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAAT
* * * *
13376 AAACCAATCCATATTTTAAAATAAATCAATCTATACT-AATAAAT-TA-TTTAAAATAAATCAAT
58 AAATCAATCCATA--CT--AATAAAT-AATCTAAAATAAATAAATCTATTTTAAAATAAATCAAT
* *
13438 C---C--AT--A-T-TTTAAAATAAATCAAT-CCATACTAA-TAAATTATTT
118 CATACTAATAAATTATTTAAAATAAATCAATCCCAAAC-AACTACA--A--T
* * *
13479 AAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAGTAAATCA
1 --AATAAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
* *
13544 ATCGATAC-AACTACAATAA--T-AAATCAAT---TCATATTTTAAAATAAATCAATCCATACTA
64 ATCCATACTAA-TA-AATAATCTAAAATAAATAAATC-TATTTTAAAATAAATCAAT-CATACTA
* *** *
13602 ATAAATTATTTAAAATAAATCAAT-CCATA-TTTTAAAAT
125 ATAAATTATTTAAAATAAATCAATCCCAAACAACTACAAT
* *
13640 AAATCAATCCATACTAATAAATTATTTAAAATAAATC-A---AT-CT-AT--A-T-TTTAAAATA
1 -AATAAATCAAT-CT-AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
* * * * *
13695 AATCAATTCATATTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACAT
59 AATCAATCCATACTAATAAATAATCTAAAATAAATAAAT-C-TATTTTAAAATAAATCAAT-CAT
* * **
13760 ACTAATAAATTATTTAAAATAAATAAAT-CTATTCAACTACAAT
121 ACTAATAAATTATTTAAAATAAATCAATCCCAAACAACTACAAT
* * *
13803 AATAAACCAATCCACATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
* * *
13868 CCATATTTTAAAATAAATCAATCTATACT-AATAAAT-TA-TTTAAAATAAATCAATCCATATTT
66 CCATA--CT--AATAAAT-AATCTAAAATAAATAAATCTATTTTAAAATAAATCAAT-CATA---
*
13930 TATAATAAATTATTTTAAAATAAAT
122 -CTAATAAATTA-TTTAAAATAAAT
13955 TATTTTAAAA
Statistics
Matches: 882, Mismatches: 113, Indels: 259
0.70 0.09 0.21
Matches are distributed among these distances:
152 6 0.01
153 1 0.00
154 3 0.00
155 12 0.01
156 143 0.16
157 24 0.03
158 19 0.02
159 5 0.01
160 42 0.05
161 17 0.02
162 136 0.15
163 11 0.01
164 5 0.01
165 20 0.02
166 303 0.34
167 16 0.02
168 8 0.01
169 3 0.00
170 43 0.05
171 32 0.04
172 30 0.03
173 2 0.00
174 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (164 bp):
AATAAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
CCATACTAATAAATAATCTAAAATAAATAAATCTATTTTAAAATAAATCAATCATACTAATAAAT
TATTTAAAATAAATCAATCCCAAACAACTACAAT
Found at i:13945 original size:15 final size:15
Alignment explanation
Indices: 13925--13997 Score: 87
Period size: 15 Copynumber: 5.0 Consensus size: 15
13915 AATCAATCCA
*
13925 TATTTTATAATAAAT
1 TATTTTAAAATAAAT
13940 TATTTTAAAATAAAT
1 TATTTTAAAATAAAT
13955 TATTTTAAAATAAAT
1 TATTTTAAAATAAAT
* ** *
13970 AACCTT--ATTAAAT
1 TATTTTAAAATAAAT
13983 TATTTTAAAATAAAT
1 TATTTTAAAATAAAT
13998 AATCTTATTA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
13 9 0.19
15 38 0.81
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTTTAAAATAAAT
Found at i:13990 original size:28 final size:28
Alignment explanation
Indices: 13950--14020 Score: 126
Period size: 28 Copynumber: 2.6 Consensus size: 28
13940 TATTTTAAAA
13950 TAAATTATTTTAAAATAAATAACCTTAT
1 TAAATTATTTTAAAATAAATAACCTTAT
*
13978 TAAATTATTTTAAAATAAATAATCTTAT
1 TAAATTATTTTAAAATAAATAACCTTAT
14006 TAAATTA-TTTAAAAT
1 TAAATTATTTTAAAAT
14021 TATTTTAATA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.19
28 34 0.81
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (28 bp):
TAAATTATTTTAAAATAAATAACCTTAT
Found at i:14797 original size:23 final size:23
Alignment explanation
Indices: 14767--14818 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
14757 ATTTAAACTT
14767 TTTTTAATAAAAATAAATTTATA
1 TTTTTAATAAAAATAAATTTATA
* * *
14790 TTTTTAATAAATATTATTTTATA
1 TTTTTAATAAAAATAAATTTATA
*
14813 ATTTTA
1 TTTTTA
14819 TATTATTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TTTTTAATAAAAATAAATTTATA
Found at i:14800 original size:17 final size:17
Alignment explanation
Indices: 14778--14837 Score: 56
Period size: 17 Copynumber: 3.7 Consensus size: 17
14768 TTTTAATAAA
*
14778 AATAAATTTATATTTTT
1 AATAAATATATATTTTT
14795 AATAAATAT-TA-TTTT
1 AATAAATATATATTTTT
* *
14810 -ATAATTTTATATTATTT
1 AATAAATATATATT-TTT
14827 AA-AAATATATA
1 AATAAATATATA
14838 ATTGAATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 6 0.18
15 6 0.18
16 3 0.09
17 18 0.53
18 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATAAATATATATTTTT
Found at i:14847 original size:56 final size:58
Alignment explanation
Indices: 14755--14906 Score: 144
Period size: 55 Copynumber: 2.7 Consensus size: 58
14745 TGCTAAAATA
*
14755 TAATTTAA-ACTTTTTTTAATAAAA-ATA-AATTT--ATATTTTTAATAAAT-ATTATTTT
1 TAATTTAATA-TTTATTTAA-AAAATATATAATTTAAATATTTTTAATAAATAATTA-TTT
* * *
14810 ATAATTTTATA-TTATTT-AAAAATATATAA-TTGAATA-TTTTATTAAATAATTATTT
1 -TAATTTAATATTTATTTAAAAAATATATAATTTAAATATTTTTAATAAATAATTATTT
* *
14865 TAATTTAATATTTTTTTAAAAAATATTTAATTTAAATATTTT
1 TAATTTAATATTTATTTAAAAAATATATAATTTAAATATTTT
14907 AACTTTATTT
Statistics
Matches: 79, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
53 4 0.05
54 15 0.19
55 25 0.32
56 25 0.32
57 7 0.09
58 3 0.04
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.55
Consensus pattern (58 bp):
TAATTTAATATTTATTTAAAAAATATATAATTTAAATATTTTTAATAAATAATTATTT
Found at i:14876 original size:13 final size:14
Alignment explanation
Indices: 14860--14913 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 14
14850 ATTAAATAAT
14860 TATTTTAATTT-AA
1 TATTTTAATTTAAA
14873 TATTTT--TTTAAAA
1 TATTTTAATTT-AAA
*
14886 AATATTTAATTTAAA
1 TAT-TTTAATTTAAA
14901 TATTTTAACTTTA
1 TATTTTAA-TTTA
14914 TTTATAATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
11 3 0.09
13 10 0.30
14 8 0.24
15 9 0.27
16 3 0.09
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (14 bp):
TATTTTAATTTAAA
Found at i:14902 original size:28 final size:27
Alignment explanation
Indices: 14821--14907 Score: 102
Period size: 29 Copynumber: 3.1 Consensus size: 27
14811 TAATTTTATA
* * *
14821 TTATTTAAAAATATATAATTGAATATT
1 TTATTAAAAAATATTTAATTTAATATT
*
14848 TTATTAAATAATTATTTTAATTTAATATT
1 TTATTAAA-AAATA-TTTAATTTAATATT
*
14877 TTTTTAAAAAATATTTAATTTAAATATT
1 TTATTAAAAAATATTTAATTT-AATATT
14905 TTA
1 TTA
14908 ACTTTATTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 15 0.30
28 16 0.32
29 19 0.38
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (27 bp):
TTATTAAAAAATATTTAATTTAATATT
Found at i:14906 original size:27 final size:26
Alignment explanation
Indices: 14811--14906 Score: 95
Period size: 29 Copynumber: 3.5 Consensus size: 26
14801 TATTATTTTA
* * *
14811 TAATTTTATATTATTT-AAAAATATA
1 TAATTTAATATTTTTTAAAAAATATT
* *
14836 TAATTGAATATTTTATTAAATAATTATTT
1 TAATTTAATATTTT-TTAAA-AAATA-TT
14865 TAATTTAATATTTTTTTAAAAAATATT
1 TAATTTAATA-TTTTTTAAAAAATATT
14892 TAATTTAAATATTTT
1 TAATTT-AATATTTT
14907 AACTTTATTT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
25 11 0.19
26 2 0.03
27 14 0.24
28 12 0.21
29 15 0.26
30 4 0.07
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (26 bp):
TAATTTAATATTTTTTAAAAAATATT
Found at i:18361 original size:16 final size:17
Alignment explanation
Indices: 18311--18361 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
18301 GTTCGATTCG
* **
18311 AATTTAAAAAAAACTTA
1 AATTTAAAATAATTTTA
*
18328 AATTTAAAATATTTTTA
1 AATTTAAAATAATTTTA
*
18345 AATTT-AACTAATTTTA
1 AATTTAAAATAATTTTA
18361 A
1 A
18362 GCTTGAACTA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
16 10 0.36
17 18 0.64
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (17 bp):
AATTTAAAATAATTTTA
Found at i:18576 original size:27 final size:27
Alignment explanation
Indices: 18524--18580 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
18514 ATTTCGATTC
*
18524 ATTAAAAATTCAAATAAAATCTATTTAA
1 ATTAAAAATT-AAATAAAATCAATTTAA
*
18552 ATTAAAAATT-AATCAAATCAAATTTAA
1 ATTAAAAATTAAATAAAATC-AATTTAA
18579 AT
1 AT
18581 AACTTTCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.31
27 8 0.31
28 10 0.38
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (27 bp):
ATTAAAAATTAAATAAAATCAATTTAA
Found at i:34540 original size:20 final size:20
Alignment explanation
Indices: 34508--34545 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
34498 TCCTCTCATT
*
34508 TCTTCTTTCCTTCTTTCTTA
1 TCTTCTTTCCTTCCTTCTTA
34528 TCTTC-TTCTCTTCCTTCT
1 TCTTCTTTC-CTTCCTTCT
34546 CCAAACGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.63
Consensus pattern (20 bp):
TCTTCTTTCCTTCCTTCTTA
Found at i:35774 original size:147 final size:148
Alignment explanation
Indices: 35577--35889 Score: 515
Period size: 148 Copynumber: 2.1 Consensus size: 148
35567 GGGTAGAGGG
* *
35577 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTT-GAAAGACACA
1 TCTACGCGGTCCTTC-GGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
* * *
35641 TGCTTGATCCTTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACACCATT
65 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACACCATT
35706 ATATGGCACTACGGTGCAAT
130 ATATGGCACTACGGTGC-AT
*
35726 TCTACGCGGTCCTTCGGATATATATATATT-TGTGGAACATGTGTGAAGTCTTGGAAAGACACAT
1 TCTACGCGGTCCTTCGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACAT
*
35790 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACACCATTA
35855 TATGGCACTACGGTGCAT
131 TATGGCACTACGGTGCAT
35873 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
35890 TGCATTTATA
Statistics
Matches: 155, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
146 1 0.01
147 38 0.25
148 101 0.65
149 15 0.10
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (148 bp):
TCTACGCGGTCCTTCGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACAT
ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACACCATTA
TATGGCACTACGGTGCAT
Found at i:41970 original size:21 final size:21
Alignment explanation
Indices: 41928--41970 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
41918 TTTTCGGGTT
* *
41928 AGGGGAATCGATACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
41949 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
41970 A
1 A
41971 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.30, G:0.23, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:42702 original size:147 final size:149
Alignment explanation
Indices: 42511--42824 Score: 544
Period size: 148 Copynumber: 2.1 Consensus size: 149
42501 GGGTAGAGGG
* *
42511 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTT-GAAAGACACA
1 TCTACGCGGTCCTTCGGGA-ATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
* * *
42575 TGCTTGATCCTTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
65 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
42640 ATATGGCACTACGGTGCAAT
130 ATATGGCACTACGGTGCAAT
42660 TCTACGCGGTCCTTCGGG-ATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACAT
1 TCTACGCGGTCCTTCGGGAATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACAT
42724 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATTA
42789 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
42808 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
42825 TGCATTTATA
Statistics
Matches: 158, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
147 33 0.21
148 107 0.68
149 18 0.11
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGAATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACAT
ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:42836 original size:23 final size:23
Alignment explanation
Indices: 42792--42836 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
42782 ATCATTATAT
*
42792 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
42815 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
42837 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:46125 original size:45 final size:37
Alignment explanation
Indices: 46102--46198 Score: 126
Period size: 36 Copynumber: 2.6 Consensus size: 37
46092 TTTTATGAAA
*
46102 AATATTTTAAAATTCATGTAATTAT-ATTATTTTTTG
1 AATATTTTAAAATTCATGTAATTATAACTATTTTTTG
*
46138 AATATTTTAAAATTCATGTAATTAT-ATTATTATTTTTG
1 AATATTTTAAAATTCATGTAATTATAACTA-T-TTTTTG
**
46176 AATATTTTACTATTCATGTAATT
1 AATATTTTAAAATTCATGTAATT
46199 GTATTATTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
36 29 0.51
37 1 0.02
38 27 0.47
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (37 bp):
AATATTTTAAAATTCATGTAATTATAACTATTTTTTG
Found at i:46183 original size:38 final size:38
Alignment explanation
Indices: 46102--46217 Score: 182
Period size: 38 Copynumber: 3.1 Consensus size: 38
46092 TTTTATGAAA
46102 AATATTTTAAAATTCATGTAATTATATTA-T-TTTTTG
1 AATATTTTAAAATTCATGTAATTATATTATTATTTTTG
46138 AATATTTTAAAATTCATGTAATTATATTATTATTTTTG
1 AATATTTTAAAATTCATGTAATTATATTATTATTTTTG
** * *
46176 AATATTTTACTATTCATGTAATTGTATTATTATTTTTA
1 AATATTTTAAAATTCATGTAATTATATTATTATTTTTG
46214 AATA
1 AATA
46218 GAATGTAATT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
36 29 0.39
37 1 0.01
38 44 0.59
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.55
Consensus pattern (38 bp):
AATATTTTAAAATTCATGTAATTATATTATTATTTTTG
Found at i:56007 original size:30 final size:33
Alignment explanation
Indices: 55945--56010 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 33
55935 ATTCAAATCA
*
55945 AAATTTTATATTTAAATGATTCAAATGTTATTATC
1 AAATTTTATATTTAAA-GATT-AAATATTATTATC
55980 AAATTTTATATTT-AA-ATT-AATATTATTATC
1 AAATTTTATATTTAAAGATTAAATATTATTATC
56010 A
1 A
56011 GTTAAATATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 12 0.40
32 3 0.10
34 2 0.07
35 13 0.43
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (33 bp):
AAATTTTATATTTAAAGATTAAATATTATTATC
Done.