Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000235.1 Hibiscus syriacus cultivar Beakdansim tig00000405_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 589249
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 3
Found at i:257264 original size:10 final size:10
Alignment explanation
Indices: 257249--257329 Score: 63
Period size: 10 Copynumber: 7.1 Consensus size: 10
257239 CATTTAATAA
257249 ATAAACGAAC
1 ATAAACGAAC
257259 ATAAACGAAC
1 ATAAACGAAC
257269 ATGAATGAACGAACAC
1 AT--A--AACG-A-AC
257285 AATAAACGAAC
1 -ATAAACGAAC
257296 ATAAACGAACAC
1 ATAAACG-A-AC
*
257308 AATAAACAAAC
1 -ATAAACGAAC
257319 ATAAACGAAC
1 ATAAACGAAC
257329 A
1 A
257330 ACACAAACAC
Statistics
Matches: 59, Mismatches: 2, Indels: 20
0.73 0.02 0.25
Matches are distributed among these distances:
10 29 0.49
11 5 0.08
12 5 0.08
13 10 0.17
14 4 0.07
15 2 0.03
16 2 0.03
17 2 0.03
ACGTcount: A:0.60, C:0.20, G:0.10, T:0.10
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:257293 original size:27 final size:25
Alignment explanation
Indices: 257259--257335 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 25
257249 ATAAACGAAC
257259 ATAAACGAACATGAATGAACGAACACA
1 ATAAACGAACAT-AA-GAACGAACACA
257286 ATAAACGAACAT-A-AACGAACACA
1 ATAAACGAACATAAGAACGAACACA
*
257309 ATAAACAAACATAAACGAAC-AACACA
1 ATAAACGAACAT-AA-GAACGAACACA
257335 A
1 A
257336 ACACAAAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
23 21 0.47
25 2 0.04
26 7 0.16
27 15 0.33
ACGTcount: A:0.61, C:0.21, G:0.09, T:0.09
Consensus pattern (25 bp):
ATAAACGAACATAAGAACGAACACA
Found at i:257298 original size:37 final size:34
Alignment explanation
Indices: 257248--257329 Score: 112
Period size: 37 Copynumber: 2.4 Consensus size: 34
257238 TCATTTAATA
* *
257248 AATAAACGAACATAAACGAACATGAATGAACGAACAC
1 AATAAACGAACATAAACGAACA-CAATAAAC-AA-AC
257285 AATAAACGAACATAAACGAACACAATAAACAAAC
1 AATAAACGAACATAAACGAACACAATAAACAAAC
257319 -ATAAACGAACA
1 AATAAACGAACA
257330 ACACAAACAC
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
33 11 0.26
34 2 0.05
35 2 0.05
36 6 0.14
37 22 0.51
ACGTcount: A:0.61, C:0.20, G:0.10, T:0.10
Consensus pattern (34 bp):
AATAAACGAACATAAACGAACACAATAAACAAAC
Found at i:257306 original size:23 final size:23
Alignment explanation
Indices: 257276--257329 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
257266 AACATGAATG
*
257276 AACGAACACAATAAACGAACATA
1 AACGAACACAATAAACAAACATA
257299 AACGAACACAATAAACAAACATA
1 AACGAACACAATAAACAAACATA
257322 AACGAACA
1 AACGAACA
257330 ACACAAACAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.63, C:0.22, G:0.07, T:0.07
Consensus pattern (23 bp):
AACGAACACAATAAACAAACATA
Found at i:261187 original size:19 final size:19
Alignment explanation
Indices: 261155--261191 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
261145 ATGACCAACA
*
261155 AAATCACAATGCGATCTCT
1 AAATCACAACGCGATCTCT
*
261174 AAATCGCAACGCGATCTC
1 AAATCACAACGCGATCTC
261192 CAGTATCGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.22
Consensus pattern (19 bp):
AAATCACAACGCGATCTCT
Found at i:261269 original size:19 final size:20
Alignment explanation
Indices: 261226--261270 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
261216 TTCGCAACGT
*
261226 GATTTTGACTATCGCATTAC
1 GATTTTGACTATCGCAGTAC
*
261246 GATTTTGACTATCGC-GTGC
1 GATTTTGACTATCGCAGTAC
261265 GATTTT
1 GATTTT
261271 AGAAAATCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (20 bp):
GATTTTGACTATCGCAGTAC
Found at i:261492 original size:17 final size:17
Alignment explanation
Indices: 261470--261507 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
261460 TGACATCCGT
261470 TCCTATATCCAACGACA
1 TCCTATATCCAACGACA
261487 TCCTATATCCAACGACA
1 TCCTATATCCAACGACA
261504 TCCT
1 TCCT
261508 TCCCCATCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.32, C:0.37, G:0.05, T:0.26
Consensus pattern (17 bp):
TCCTATATCCAACGACA
Found at i:262188 original size:24 final size:24
Alignment explanation
Indices: 262161--262214 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
262151 GTATTCGAAA
*
262161 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGCCAATACCCGGAC
* *
262185 TTTGATCTTGGCCAATACTCGGAT
1 TTTGATCTTGGCCAATACCCGGAC
262209 TTTGAT
1 TTTGAT
262215 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATCTTGGCCAATACCCGGAC
Found at i:262433 original size:14 final size:14
Alignment explanation
Indices: 262404--262440 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
262394 AGAAGAAGAA
262404 GAAGAAGAAATCCCC
1 GAAGAA-AAATCCCC
*
262419 GAAGAAAAGTCCCC
1 GAAGAAAAATCCCC
262433 GAAGAAAA
1 GAAGAAAA
262441 TGCCACGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.05
Consensus pattern (14 bp):
GAAGAAAAATCCCC
Found at i:262589 original size:18 final size:18
Alignment explanation
Indices: 262566--262600 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
262556 AGCAAAAGGC
*
262566 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
262584 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
262601 CAACCAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:262796 original size:20 final size:20
Alignment explanation
Indices: 262771--262827 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
262761 TTACACATTC
262771 ATTTGAATATCGCAACGCGA
1 ATTTGAATATCGCAACGCGA
* * * *
262791 ATTTGATTATTGCAGCGGGA
1 ATTTGAATATCGCAACGCGA
*
262811 ATTTGACTATCGCAACG
1 ATTTGAATATCGCAACG
262828 AGAAAATCGC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (20 bp):
ATTTGAATATCGCAACGCGA
Found at i:262888 original size:19 final size:20
Alignment explanation
Indices: 262866--262908 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
262856 GCAACGCGAA
262866 TTGACTTTCGC-ATGCGATT
1 TTGACTTTCGCGATGCGATT
*
262885 TTGACTTTCGCGTTGCGATT
1 TTGACTTTCGCGATGCGATT
262905 TTGA
1 TTGA
262909 GTTCAGCGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.14, C:0.19, G:0.23, T:0.44
Consensus pattern (20 bp):
TTGACTTTCGCGATGCGATT
Found at i:262903 original size:20 final size:20
Alignment explanation
Indices: 262866--262922 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
262856 GCAACGCGAA
*
262866 TTGACTTTCGC-ATGCGATT
1 TTGACTTTCGCGTTGCGATT
262885 TTGACTTTCGCGTTGCGATT
1 TTGACTTTCGCGTTGCGATT
*
262905 TTGA-GTTCAGCGTTGCGA
1 TTGACTTTC-GCGTTGCGA
262923 AAGTGTACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 14 0.41
20 20 0.59
ACGTcount: A:0.14, C:0.19, G:0.26, T:0.40
Consensus pattern (20 bp):
TTGACTTTCGCGTTGCGATT
Found at i:263086 original size:67 final size:69
Alignment explanation
Indices: 262974--263152 Score: 192
Period size: 71 Copynumber: 2.6 Consensus size: 69
262964 GATTGAAATC
* *
262974 AACAAATCAACTTTTACATTTCAATCAATTAAACAGGC---ACAAATAAGAA-TTA-TTTACACA
1 AACAAATCAACTTTTACA--T-AATCAATTAAACAAGCAAAAAAAATAAGAATTTATTTTACACA
263034 TCAATTA
63 TCAATTA
* * *
263041 AACAAATCAACTTTTACA-AATCAATTAAACAAGCAAAAAATAATAATAATTCTTATTTTCCTCA
1 AACAAATCAACTTTTACATAATCAATTAAACAAGCAAAAAA-AATAAGAA-T-TTATTTTACACA
263105 TCAATTA
63 TCAATTA
* *
263112 AACAAATCAACTTTTA-AGAATCAATTAAACAATCAAAAAAA
1 AACAAATCAACTTTTACATAATCAATTAAACAAGCAAAAAAA
263153 GTGTACCCCA
Statistics
Matches: 97, Mismatches: 6, Indels: 15
0.82 0.05 0.13
Matches are distributed among these distances:
63 15 0.15
66 2 0.02
67 25 0.26
70 5 0.05
71 50 0.52
ACGTcount: A:0.51, C:0.17, G:0.03, T:0.29
Consensus pattern (69 bp):
AACAAATCAACTTTTACATAATCAATTAAACAAGCAAAAAAAATAAGAATTTATTTTACACATCA
ATTA
Found at i:264501 original size:42 final size:42
Alignment explanation
Indices: 264442--264562 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 42
264432 GTGAATCGGG
* *
264442 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGGACCTCTTGAACGATGACAGGGGC
** *
264484 CTCTTGAACGGTGGGAGGGGA-CTCTTGAGGGATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACCTCTTGAACGATGACAGGGGC
* *
264526 CTCTTGAACGATAGGAGAGG-CCTCTTGAACGATGACA
1 CTCTTGAACGGTGGGAG-GGACCTCTTGAACGATGACA
264563 TGTGAGTTGG
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 61 0.92
43 4 0.06
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.21
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGGGACCTCTTGAACGATGACAGGGGC
Found at i:264502 original size:21 final size:21
Alignment explanation
Indices: 264442--264556 Score: 97
Period size: 21 Copynumber: 5.5 Consensus size: 21
264432 GTGAATCGGG
* *
264442 CTCTTGAATGGTGGGAGGGAC
1 CTCTTGAACGGTGGGAGGGGC
* * **
264463 CTCTTCAACGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGGGC
*
264484 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGC
* **
264505 CTCTTG-AGGGATGATAGGGGC
1 CTCTTGAACGG-TGGGAGGGGC
* * *
264526 CTCTTGAACGATAGGAGAGGC
1 CTCTTGAACGGTGGGAGGGGC
264547 CTCTTGAACG
1 CTCTTGAACG
264557 ATGACATGTG
Statistics
Matches: 71, Mismatches: 21, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
20 3 0.04
21 66 0.93
22 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.37, T:0.22
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGC
Found at i:265065 original size:20 final size:20
Alignment explanation
Indices: 265040--265083 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
265030 AATAGTTTCT
265040 GAAACTTAAAATCGCAACAC
1 GAAACTTAAAATCGCAACAC
*
265060 GAAACTTAAAATCGCAACGC
1 GAAACTTAAAATCGCAACAC
265080 GAAA
1 GAAA
265084 ATGACTATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.23, G:0.14, T:0.14
Consensus pattern (20 bp):
GAAACTTAAAATCGCAACAC
Found at i:265093 original size:20 final size:20
Alignment explanation
Indices: 265070--265117 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
265060 GAAACTTAAA
265070 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
265090 ATCGCAACGTGAATTTGACT
1 ATCGCAACGCGAAAATGACT
265110 ATCGCAAC
1 ATCGCAAC
265118 AAGATAATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:265147 original size:19 final size:19
Alignment explanation
Indices: 265123--265180 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 19
265113 GCAACAAGAT
*
265123 AATCGCAATGCGAAATAAA
1 AATCGCAACGCGAAATAAA
**
265142 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAATAAA
265161 AATCGCAACGCGAAAATAAA
1 AATCGCAACGCG-AAATAAA
265181 TCAGTGTTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 28 0.85
20 5 0.15
ACGTcount: A:0.52, C:0.22, G:0.16, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATAAA
Found at i:267158 original size:20 final size:20
Alignment explanation
Indices: 267135--267175 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
267125 TCTGAAACTT
*
267135 AAAATCACAACATGAAAATG
1 AAAATCACAACACGAAAATG
*
267155 AAAATCGCAACACGAAAATG
1 AAAATCACAACACGAAAATG
267175 A
1 A
267176 CTATCGCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.59, C:0.17, G:0.12, T:0.12
Consensus pattern (20 bp):
AAAATCACAACACGAAAATG
Found at i:267181 original size:20 final size:20
Alignment explanation
Indices: 267142--267211 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
267132 CTTAAAATCA
* **
267142 CAACATGAAAATGAAAATCG
1 CAACACGAAAATGACTATCG
267162 CAACACGAAAATGACTATCG
1 CAACACGAAAATGACTATCG
* **
267182 CAACGCGAATTTGACTATCG
1 CAACACGAAAATGACTATCG
*
267202 CAACGCGAAA
1 CAACACGAAA
267212 TGAAAATCGC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.16
Consensus pattern (20 bp):
CAACACGAAAATGACTATCG
Found at i:267222 original size:19 final size:19
Alignment explanation
Indices: 267150--267240 Score: 85
Period size: 20 Copynumber: 4.7 Consensus size: 19
267140 CACAACATGA
*
267150 AAATGAAAATCGCAACACG
1 AAATGAAAATCGCAACGCG
**
267169 AAAATGACTATCGCAACGCG
1 -AAATGAAAATCGCAACGCG
* **
267189 AATTTGACTATCGCAACGCG
1 AA-ATGAAAATCGCAACGCG
*
267209 AAATGAAAATCGCAAAGCG
1 AAATGAAAATCGCAACGCG
267228 AAACT-AAAATCGC
1 AAA-TGAAAATCGC
267241 GTTGCTATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
19 26 0.43
20 35 0.57
ACGTcount: A:0.45, C:0.22, G:0.18, T:0.15
Consensus pattern (19 bp):
AAATGAAAATCGCAACGCG
Found at i:267657 original size:22 final size:22
Alignment explanation
Indices: 267631--267687 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
267621 GATGGAGATA
267631 GACGGATTTCGCCAGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
* *
267653 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
*
267675 GACGGATGTCGCC
1 GACGGATTTCGCC
267688 GTAGAGAGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.42, T:0.19
Consensus pattern (22 bp):
GACGGATTTCGCCAGAGATGGG
Found at i:275423 original size:16 final size:16
Alignment explanation
Indices: 275402--275434 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
275392 TGGATTACAA
275402 TAAAATTTTATATATC
1 TAAAATTTTATATATC
275418 TAAAATTTTATATATC
1 TAAAATTTTATATATC
275434 T
1 T
275435 TATAATACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (16 bp):
TAAAATTTTATATATC
Found at i:279017 original size:13 final size:13
Alignment explanation
Indices: 278996--279037 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
278986 AAATTTAAAT
278996 AAAAATTAAGTGG
1 AAAAATTAAGTGG
* *
279009 AAAATTTAAAT--
1 AAAAATTAAGTGG
279020 AAAAATTAAGTGG
1 AAAAATTAAGTGG
279033 AAAAA
1 AAAAA
279038 GAAAATTAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
11 9 0.39
13 14 0.61
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (13 bp):
AAAAATTAAGTGG
Found at i:279017 original size:24 final size:24
Alignment explanation
Indices: 278986--279036 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
278976 ATGTTTATTT
278986 AAATTTAAATAAAAATTAAGTGGA
1 AAATTTAAATAAAAATTAAGTGGA
279010 AAATTTAAATAAAAATTAAGTGGA
1 AAATTTAAATAAAAATTAAGTGGA
279034 AAA
1 AAA
279037 AGAAAATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (24 bp):
AAATTTAAATAAAAATTAAGTGGA
Found at i:279043 original size:24 final size:24
Alignment explanation
Indices: 278992--279043 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
278982 ATTTAAATTT
***
278992 AAATAAAAATTAAGTGGAAAATTT
1 AAATAAAAATTAAGTGGAAAAAGA
279016 AAATAAAAATTAAGTGGAAAAAGA
1 AAATAAAAATTAAGTGGAAAAAGA
279040 AAAT
1 AAAT
279044 TAGAAAAACG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.23
Consensus pattern (24 bp):
AAATAAAAATTAAGTGGAAAAAGA
Found at i:284038 original size:6 final size:6
Alignment explanation
Indices: 284028--284060 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
284018 CAAACTACTT
*
284028 TTGTCT TTGTCA TTGTCA TTGTCA TTGTCA TTG
1 TTGTCA TTGTCA TTGTCA TTGTCA TTGTCA TTG
284061 CGATGCTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.12, C:0.15, G:0.18, T:0.55
Consensus pattern (6 bp):
TTGTCA
Found at i:287081 original size:117 final size:117
Alignment explanation
Indices: 286886--287286 Score: 694
Period size: 117 Copynumber: 3.4 Consensus size: 117
286876 TCCTTTGTTG
*
286886 TGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
1 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
*
286951 TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCGCAGGCTCCTCGACTT
66 TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCGCAGGCTCCTCGGCTT
* *
287003 TGTGCTCAGGGTAAGTCCTTACTAGTGTGCAGGTGGGTGTATGGTTCTGGGGAATCTACACATTT
1 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
*
287068 TGGTGATTAGAGTGATTGGATGGGAAAGTTATTACCGCAGGCTCCTCGGCTT
66 TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCGCAGGCTCCTCGGCTT
* *
287120 TGTGCTCAGGGTATGTCCTTACTGATGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
1 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
* * *
287185 TGGTGATTGGGGTGATTGGATGAGAAAGTTATTACCGTAGGCTCCTCGGCTT
66 TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCGCAGGCTCCTCGGCTT
* *
287237 TGTGCTCAGGGTAAGTCCTTACTGGTGTACAGGTGGGTGTATAGTTCTGG
1 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGG
287287 AAAATATATA
Statistics
Matches: 267, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
117 267 1.00
ACGTcount: A:0.18, C:0.15, G:0.33, T:0.33
Consensus pattern (117 bp):
TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCGCAGGCTCCTCGGCTT
Found at i:291425 original size:20 final size:20
Alignment explanation
Indices: 291396--291438 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
291386 TCTAAAAGAC
*
291396 CATTTCGAATCATATAGATG
1 CATTTAGAATCATATAGATG
* *
291416 CATTTAGAATCATTTAGTTG
1 CATTTAGAATCATATAGATG
291436 CAT
1 CAT
291439 GTGGTGGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (20 bp):
CATTTAGAATCATATAGATG
Found at i:295910 original size:20 final size:20
Alignment explanation
Indices: 295885--295927 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
295875 TCTAAAAGAC
*
295885 CATTTAGAATCATATAGATG
1 CATTTAGAAGCATATAGATG
* *
295905 CATTTAGAAGCATTTAGTTG
1 CATTTAGAAGCATATAGATG
295925 CAT
1 CAT
295928 GTGGTGGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (20 bp):
CATTTAGAAGCATATAGATG
Found at i:300766 original size:117 final size:117
Alignment explanation
Indices: 300621--301019 Score: 672
Period size: 117 Copynumber: 3.4 Consensus size: 117
300611 CTTTGCTGTT
* * * * *
300621 TGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGAGTGTATGGTTCTGGCGAGCCTATACATTTTG
1 TGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTTTG
* *
300686 GTGATTGGAGTGATTGGATGGGAAAGTTATTATTGTACGCTCCTCGGCTTTG
66 GTGATTGGAGTGATTGGATGGGAAAGTTATTATCGTAGGCTCCTCGGCTTTG
*
300738 TGCTCAGGGTAAGTCCTTACTGGTGTGCATGTGGGTGTATGGTTCTGGGGAACCTACACATTTTG
1 TGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTTTG
** *
300803 GTGATTGGAGTGATTGGATGGGAAAGTTATTATCACAGGCTTCTCGGCTTTG
66 GTGATTGGAGTGATTGGATGGGAAAGTTATTATCGTAGGCTCCTCGGCTTTG
*
300855 TGCTCAGGGTAGGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTTTG
1 TGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTTTG
* *
300920 GTGATTGGAGTGATTGGATGGGAAAGTTATTACCGTAGGCTCCTCAGCTTTG
66 GTGATTGGAGTGATTGGATGGGAAAGTTATTATCGTAGGCTCCTCGGCTTTG
300972 TGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGG
1 TGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGG
301020 AAAATATATA
Statistics
Matches: 263, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 263 1.00
ACGTcount: A:0.18, C:0.15, G:0.34, T:0.34
Consensus pattern (117 bp):
TGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTTTG
GTGATTGGAGTGATTGGATGGGAAAGTTATTATCGTAGGCTCCTCGGCTTTG
Found at i:309413 original size:106 final size:106
Alignment explanation
Indices: 309221--310171 Score: 1456
Period size: 106 Copynumber: 9.0 Consensus size: 106
309211 GCATTGTTCT
* * *
309221 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAATCGGGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACA
* * * ** *
309285 ACCAACCGTCCCTTCGTTGTGAAGTTGAACTTATGTTGTCTC
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
309327 GAGTCCAATATTCTTCGCTATGAAGTTGAAATTGACTCCGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* *
309392 CCAGCGGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
309433 GAGTCAAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
**
309498 CCAGCGGTCCCTTAATCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
309539 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
309604 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
309645 GAGTCCAATATCCTTCTCTGTGAAGTTGAAATTGGCTCTAAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* *
309710 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTGTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
309751 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
309816 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
309857 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTAACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
309922 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
309963 GAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATT-TTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
** * * * *
310027 CCAGCCATCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
310068 GAGTCCAATGTCTTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * * *
310133 CCAGCCGTCCCTTCGTTGTAAAGTTGAACTTGTGTTGTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
310172 GCGGATGGCC
Statistics
Matches: 779, Mismatches: 64, Indels: 4
0.92 0.08 0.00
Matches are distributed among these distances:
105 94 0.12
106 684 0.88
107 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:311728 original size:22 final size:21
Alignment explanation
Indices: 311703--311774 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 21
311693 CTTTTTGTCC
*
311703 CTTTTTCTTTTGATTTTTGCTT
1 CTTTTTTTTTTG-TTTTTGCTT
* *
311725 CTTTTCTTTTTTGTTCTTGATT
1 CTTTT-TTTTTTGTTTTTGCTT
311747 CTCTTTTTTATTTGTTTTTTGCTT
1 CT-TTTTTT-TTTG-TTTTTGCTT
311771 CTTT
1 CTTT
311775 GCTTTTTTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
22 17 0.41
23 15 0.37
24 9 0.22
ACGTcount: A:0.04, C:0.14, G:0.08, T:0.74
Consensus pattern (21 bp):
CTTTTTTTTTTGTTTTTGCTT
Found at i:311767 original size:46 final size:46
Alignment explanation
Indices: 311703--311792 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
311693 CTTTTTGTCC
* * *
311703 CTTTTTCTTTTGATTTTTGCTTCTTTTCTTTTTTGTTCTTGATTCT
1 CTTTTTCTTTTGATTTTTGCTTCTTTGCTTTTTTATTATTGATTCT
*
311749 CTTTTT-TATTTGTTTTTTGCTTCTTTGCTTTTTTATTATTGATT
1 CTTTTTCT-TTTGATTTTTGCTTCTTTGCTTTTTTATTATTGATT
311793 GGATCTTCGC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 1 0.03
46 38 0.97
ACGTcount: A:0.07, C:0.12, G:0.09, T:0.72
Consensus pattern (46 bp):
CTTTTTCTTTTGATTTTTGCTTCTTTGCTTTTTTATTATTGATTCT
Found at i:312944 original size:7 final size:7
Alignment explanation
Indices: 312932--312957 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
312922 TGAAACGTAG
312932 ATGCAAA
1 ATGCAAA
312939 ATGCAAA
1 ATGCAAA
312946 ATGCAAA
1 ATGCAAA
312953 ATGCA
1 ATGCA
312958 TGAAATGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (7 bp):
ATGCAAA
Found at i:314740 original size:21 final size:20
Alignment explanation
Indices: 314716--314755 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
314706 AAAATACTAA
*
314716 ATAAACTAAAGAGGAAAAAAT
1 ATAAACTAAA-AGAAAAAAAT
*
314737 ATAAATTAAAAGAAAAAAA
1 ATAAACTAAAAGAAAAAAA
314756 AAAGTTGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.72, C:0.03, G:0.10, T:0.15
Consensus pattern (20 bp):
ATAAACTAAAAGAAAAAAAT
Found at i:319873 original size:23 final size:24
Alignment explanation
Indices: 319847--319928 Score: 73
Period size: 23 Copynumber: 3.5 Consensus size: 24
319837 TATAGATCGA
*
319847 TCTTG-ATTAGTGCATTCGTGCAC
1 TCTTGTATTAGTGCATTCCTGCAC
* ** *
319870 TCTTGTATT-G-GTATTTTTAGAAC
1 TCTTGTATTAGTGCATTCCT-GCAC
319893 TCTTGTATTAGTGCATTCCTGCAC
1 TCTTGTATTAGTGCATTCCTGCAC
319917 T-TCTGTATTAGT
1 TCT-TGTATTAGT
319929 ACTATTGGGT
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
22 5 0.11
23 19 0.41
24 17 0.37
25 5 0.11
ACGTcount: A:0.18, C:0.17, G:0.18, T:0.46
Consensus pattern (24 bp):
TCTTGTATTAGTGCATTCCTGCAC
Found at i:326642 original size:11 final size:11
Alignment explanation
Indices: 326623--326653 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
326613 AGGTTTATCA
*
326623 AAGACTTCTCC
1 AAGATTTCTCC
326634 AAGATTTCTCC
1 AAGATTTCTCC
326645 AAGATTTCT
1 AAGATTTCT
326654 AATAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (11 bp):
AAGATTTCTCC
Found at i:334828 original size:23 final size:24
Alignment explanation
Indices: 334802--334846 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
334792 AAACTGCCAC
334802 GTAGAAT-TGCACCGAAGTGCCGT
1 GTAGAATATGCACCGAAGTGCCGT
334825 GTAGAATATGCACCGAAGTGCC
1 GTAGAATATGCACCGAAGTGCC
334847 ACATAGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (24 bp):
GTAGAATATGCACCGAAGTGCCGT
Found at i:334853 original size:24 final size:24
Alignment explanation
Indices: 334796--334878 Score: 75
Period size: 23 Copynumber: 3.5 Consensus size: 24
334786 CAGTCGAAAC
*
334796 TGCCACGTAGAAT-TGCACCGAAG
1 TGCCACATAGAATATGCACCGAAG
***
334819 TGCCGTGTAGAATATGCACCGAAG
1 TGCCACATAGAATATGCACCGAAG
*
334843 TGCCACATAGAA-ATGTC-CCAAAG
1 TGCCACATAGAATATG-CACCGAAG
334866 -GACCACATAGAAT
1 TG-CCACATAGAAT
334879 TTTTCCCGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
22 1 0.02
23 29 0.58
24 20 0.40
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (24 bp):
TGCCACATAGAATATGCACCGAAG
Found at i:334908 original size:25 final size:24
Alignment explanation
Indices: 334845--334908 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
334835 CACCGAAGTG
* *
334845 CCACATAGAA-ATGTCCCAAAGGA
1 CCACATAGAATTTTTCCCAAAGGA
334868 CCACATAGAATTTTTCCCGAAA-GA
1 CCACATAGAATTTTTCCC-AAAGGA
*
334892 CCACATAGGATTGTTTC
1 CCACATAGAATT-TTTC
334909 GAATGACCGC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 10 0.29
24 18 0.51
25 7 0.20
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (24 bp):
CCACATAGAATTTTTCCCAAAGGA
Found at i:334916 original size:23 final size:23
Alignment explanation
Indices: 334866--334916 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
334856 TGTCCCAAAG
334866 GACCACATAGAATTTTTCCCGAAA
1 GACCACATAGAATTTTT-CCGAAA
* *
334890 GACCACATAGGATTGTTT-CGAAT
1 GACCACATAGAATT-TTTCCGAAA
334913 GACC
1 GACC
334917 GCGTAGAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 8 0.33
24 13 0.54
25 3 0.12
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (23 bp):
GACCACATAGAATTTTTCCGAAA
Found at i:337632 original size:65 final size:65
Alignment explanation
Indices: 337527--337655 Score: 231
Period size: 65 Copynumber: 2.0 Consensus size: 65
337517 TTAAATATGG
* * *
337527 TTTATATGTTTTCTCAGAAGATCGAGTTCTAGGTGTTTGTAGAAATACTTCTGCACATTCAGCTA
1 TTTATATGTTTTCTCAGAAGATCGAGTTCCAGGTGCTTGTAAAAATACTTCTGCACATTCAGCTA
337592 TTTATATGTTTTCTCAGAAGATCGAGTTCCAGGTGCTTGTAAAAATACTTCTGCACATTCAGCT
1 TTTATATGTTTTCTCAGAAGATCGAGTTCCAGGTGCTTGTAAAAATACTTCTGCACATTCAGCT
337656 GTTGCTGTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (65 bp):
TTTATATGTTTTCTCAGAAGATCGAGTTCCAGGTGCTTGTAAAAATACTTCTGCACATTCAGCTA
Found at i:342355 original size:26 final size:26
Alignment explanation
Indices: 342319--342387 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
342309 GTTTTCGTTA
342319 TTAAAATTTTATAAATTTATTATTC-T
1 TTAAAATTTTATAAATTTA-TATTCTT
*
342345 TTAAAATTTTATAAATTTATCTTCTT
1 TTAAAATTTTATAAATTTATATTCTT
*
342371 TTAAAATTTTATTAATT
1 TTAAAATTTTATAAATT
342388 CACCGATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 4 0.10
26 36 0.90
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (26 bp):
TTAAAATTTTATAAATTTATATTCTT
Found at i:346534 original size:18 final size:18
Alignment explanation
Indices: 346493--346530 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
346483 TTATTTTTAC
*
346493 TTTAATTGCTTTTACTTA
1 TTTAATCGCTTTTACTTA
346511 TTTAATCGCTTTTA-TTA
1 TTTAATCGCTTTTACTTA
346528 TTT
1 TTT
346531 TAATATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTAATCGCTTTTACTTA
Found at i:352090 original size:15 final size:15
Alignment explanation
Indices: 352070--352107 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
352060 ATCTTCTTAT
352070 TTTTACTTTAATTAC
1 TTTTACTTTAATTAC
352085 TTTTACTTTAATTAC
1 TTTTACTTTAATTAC
352100 TTTTACTT
1 TTTTACTT
352108 ATTTAATCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTACTTTAATTAC
Found at i:361604 original size:17 final size:16
Alignment explanation
Indices: 361582--361636 Score: 58
Period size: 17 Copynumber: 3.4 Consensus size: 16
361572 TACCCAATTA
361582 CCGGGTACCCGCAAAAT
1 CCGGGTACCCG-AAAAT
**
361599 CCGGGTACCCGATTA-
1 CCGGGTACCCGAAAAT
*
361614 CCGGGTACCCGTAACAT
1 CCGGGTACCCG-AAAAT
361631 CCGGGT
1 CCGGGT
361637 CGGGACACGG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 11 0.34
16 4 0.12
17 17 0.53
ACGTcount: A:0.22, C:0.35, G:0.27, T:0.16
Consensus pattern (16 bp):
CCGGGTACCCGAAAAT
Found at i:361614 original size:32 final size:32
Alignment explanation
Indices: 361568--361636 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
361558 AACCGGGTAT
361568 CGGGTACCCAATTACCGGGTACCCGCAAAATC
1 CGGGTACCCAATTACCGGGTACCCGCAAAATC
* * *
361600 CGGGTACCCGATTACCGGGTACCCGTAACATC
1 CGGGTACCCAATTACCGGGTACCCGCAAAATC
361632 CGGGT
1 CGGGT
361637 CGGGACACGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.17
Consensus pattern (32 bp):
CGGGTACCCAATTACCGGGTACCCGCAAAATC
Found at i:361624 original size:15 final size:15
Alignment explanation
Indices: 361568--361624 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
361558 AACCGGGTAT
*
361568 CGGGTACCCAATTAC
1 CGGGTACCCGATTAC
**
361583 CGGGTACCCGCAAAATC
1 CGGGTACCCG-ATTA-C
361600 CGGGTACCCGATTAC
1 CGGGTACCCGATTAC
361615 CGGGTACCCG
1 CGGGTACCCG
361625 TAACATCCGG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 20 0.57
16 4 0.11
17 11 0.31
ACGTcount: A:0.23, C:0.35, G:0.26, T:0.16
Consensus pattern (15 bp):
CGGGTACCCGATTAC
Found at i:363263 original size:14 final size:14
Alignment explanation
Indices: 363244--363292 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
363234 CGTTCGTGAA
363244 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
363258 CGTTCGGTTATG-T
1 CGTTCGGTTATGTT
*
363271 C---CGTTTATGTT
1 CGTTCGGTTATGTT
363282 CGTTCGGTTAT
1 CGTTCGGTTAT
363293 CGTTTATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 7 0.24
11 2 0.07
13 2 0.07
14 18 0.62
ACGTcount: A:0.08, C:0.16, G:0.27, T:0.49
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:363298 original size:21 final size:23
Alignment explanation
Indices: 363251--363303 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 23
363241 GAACGTTCGG
363251 TTATGTTCGTTCGGTTATGTCCGT
1 TTATGTTCGTTCGGTTA-GTCCGT
363275 TTATGTTCGTTCGGTTA-T-CGT
1 TTATGTTCGTTCGGTTAGTCCGT
363296 TTATGTTC
1 TTATGTTC
363304 ATTCATTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 11 0.38
22 1 0.03
24 17 0.59
ACGTcount: A:0.09, C:0.15, G:0.23, T:0.53
Consensus pattern (23 bp):
TTATGTTCGTTCGGTTAGTCCGT
Found at i:363313 original size:21 final size:21
Alignment explanation
Indices: 363272--363318 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
363262 CGGTTATGTC
* *
363272 CGTTTATGTTCGTTCGGTTAT
1 CGTTTATGTTCATTCAGTTAT
*
363293 CGTTTATGTTCATTCATTTAT
1 CGTTTATGTTCATTCAGTTAT
363314 -GTTTA
1 CGTTTA
363319 ACCCAATCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.15, C:0.13, G:0.17, T:0.55
Consensus pattern (21 bp):
CGTTTATGTTCATTCAGTTAT
Found at i:364419 original size:16 final size:16
Alignment explanation
Indices: 364394--364456 Score: 85
Period size: 16 Copynumber: 4.1 Consensus size: 16
364384 CCAACGTTTA
364394 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
364410 TGTTCATTTATGTTC-
1 TGTTCGTTTATGTTCG
364425 -GTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
* *
364440 TGTTCGCTTATATTCG
1 TGTTCGTTTATGTTCG
364456 T
1 T
364457 TTATTTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.32
16 28 0.68
ACGTcount: A:0.10, C:0.14, G:0.21, T:0.56
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:364433 original size:14 final size:14
Alignment explanation
Indices: 364395--364440 Score: 65
Period size: 14 Copynumber: 3.1 Consensus size: 14
364385 CAACGTTTAT
364395 GTTCGTTTATGTTC
1 GTTCGTTTATGTTC
*
364409 GTGTTCATTTATGTTC
1 --GTTCGTTTATGTTC
364425 GTTCGTTTATGTTC
1 GTTCGTTTATGTTC
364439 GT
1 GT
364441 GTTCGCTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 15 0.54
16 13 0.46
ACGTcount: A:0.09, C:0.13, G:0.22, T:0.57
Consensus pattern (14 bp):
GTTCGTTTATGTTC
Found at i:364456 original size:30 final size:30
Alignment explanation
Indices: 364395--364457 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
364385 CAACGTTTAT
* *
364395 GTTCGTTTATGTTCGTGTTCATTTATGTTC
1 GTTCGTTTATGTTCGTGTTCACTTATATTC
*
364425 GTTCGTTTATGTTCGTGTTCGCTTATATTC
1 GTTCGTTTATGTTCGTGTTCACTTATATTC
364455 GTT
1 GTT
364458 TATTTATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.10, C:0.14, G:0.21, T:0.56
Consensus pattern (30 bp):
GTTCGTTTATGTTCGTGTTCACTTATATTC
Found at i:365173 original size:25 final size:25
Alignment explanation
Indices: 365119--365174 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
365109 TGCTTTTCTT
* *
365119 GGTTTTGTTGAGAGAGTTAGGGTTA
1 GGTTTTGTTGAGAGAGTCAGGGCTA
365144 GGTTTTGGTTGAGAGAGTCA-GGCTA
1 GGTTTT-GTTGAGAGAGTCAGGGCTA
*
365169 TGTTTT
1 GGTTTT
365175 AGCTGATTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.18, C:0.04, G:0.38, T:0.41
Consensus pattern (25 bp):
GGTTTTGTTGAGAGAGTCAGGGCTA
Found at i:375081 original size:42 final size:42
Alignment explanation
Indices: 375034--375114 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
375024 ATCATCATAA
* *
375034 TTAGCTATTTTTAATTGTTTGGAGAAGTTTATAATAGGAGTT
1 TTAGCTATTTTTAATTCTTTGGAAAAGTTTATAATAGGAGTT
* *
375076 TTAGCTATTTTTTATTCTTTGGAAAAGTTTATAGTAGGA
1 TTAGCTATTTTTAATTCTTTGGAAAAGTTTATAATAGGA
375115 ATATTTGGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.28, C:0.04, G:0.20, T:0.48
Consensus pattern (42 bp):
TTAGCTATTTTTAATTCTTTGGAAAAGTTTATAATAGGAGTT
Found at i:375167 original size:116 final size:120
Alignment explanation
Indices: 375028--375272 Score: 329
Period size: 125 Copynumber: 2.0 Consensus size: 120
375018 ACATTTATCA
* *
375028 TCATAATTAGCTATTTTTAATTGTTTGGAGAAGTTTATAATAGGAGTTT-T-AGC-TA-T-TTTT
1 TCATAATTAGCAATTTTTAATTGTTTGGAGAAGTTTATAATAGGACTTTCTCA-CATACTATTTT
* * *
375088 TATTCTTTGGAAAAGTTTATAGTAGGAATATTTGGAACATTTTTGCTTAGTTTCAT
65 TATTCTTTGGAAAAGTTTATAGTAGGAATATTCGGAAAATTTTTGCTTAGTGTCAT
* *
375144 TCATAATTTGCAATTTTTAATTGTTTGGGGAAGTTTATAATAGGACTTTCTCACATAATTAGCTA
1 TCATAATTAGCAATTTTTAATTGTTTGGAGAAGTTTATAATAGGACTTTCTCAC---A-TA-CTA
*
375209 TTTTTATTCTTTGGAAAAGTTTATAGTAGGAATGTTCGGAAAATTTTTGCTTAGTGTCAT
61 TTTTTATTCTTTGGAAAAGTTTATAGTAGGAATATTCGGAAAATTTTTGCTTAGTGTCAT
375269 TCAT
1 TCAT
375273 TTAAACAAAG
Statistics
Matches: 111, Mismatches: 8, Indels: 11
0.85 0.06 0.08
Matches are distributed among these distances:
116 45 0.41
117 2 0.02
118 1 0.01
122 2 0.02
124 1 0.01
125 60 0.54
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.47
Consensus pattern (120 bp):
TCATAATTAGCAATTTTTAATTGTTTGGAGAAGTTTATAATAGGACTTTCTCACATACTATTTTT
ATTCTTTGGAAAAGTTTATAGTAGGAATATTCGGAAAATTTTTGCTTAGTGTCAT
Found at i:400075 original size:41 final size:42
Alignment explanation
Indices: 400027--400110 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 42
400017 TTTACAACTA
* * *
400027 ATTTTGTACTTGAATAATATTATTGTTTT-GTGTGGTGTATT
1 ATTTTGTACTTAAACAATATTATTGTTTTAGTATGGTGTATT
* *
400068 ATTTTGTATTTAAACAATATTATTGTTTTAGTATTGTGTATT
1 ATTTTGTACTTAAACAATATTATTGTTTTAGTATGGTGTATT
400110 A
1 A
400111 CTAATTGAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 26 0.70
42 11 0.30
ACGTcount: A:0.26, C:0.02, G:0.15, T:0.56
Consensus pattern (42 bp):
ATTTTGTACTTAAACAATATTATTGTTTTAGTATGGTGTATT
Found at i:405409 original size:16 final size:16
Alignment explanation
Indices: 405388--405422 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
405378 ATCAGAAAGA
405388 ATATGACAAGTTTATG
1 ATATGACAAGTTTATG
405404 ATATGACAAGTTTATG
1 ATATGACAAGTTTATG
405420 ATA
1 ATA
405423 GGGCAGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.37
Consensus pattern (16 bp):
ATATGACAAGTTTATG
Found at i:410969 original size:3 final size:3
Alignment explanation
Indices: 410961--411005 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
410951 TTCCTAAATA
*
410961 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
411006 CAAACTAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:411709 original size:21 final size:21
Alignment explanation
Indices: 411685--411752 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
411675 CGTGTATAGT
* *
411685 TTATATAGATTGAAATATATA
1 TTATATAGTTTTAAATATATA
411706 TTATATA-TTTTAGAATATATA
1 TTATATAGTTTTA-AATATATA
*
411727 TATATATAGTTTTTAATATATA
1 T-TATATAGTTTTAAATATATA
411749 TTAT
1 TTAT
411753 TTATATTAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
20 3 0.07
21 19 0.46
22 15 0.37
23 4 0.10
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (21 bp):
TTATATAGTTTTAAATATATA
Found at i:411744 original size:22 final size:21
Alignment explanation
Indices: 411698--411752 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
411688 TATAGATTGA
411698 AATATATATTATATATTTTAG
1 AATATATATTATATATTTTAG
*
411719 AATATATATATATATAGTTTT-T
1 AATATATAT-TATATA-TTTTAG
411741 AATATATATTAT
1 AATATATATTAT
411753 TTATATTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 12 0.39
22 15 0.48
23 4 0.13
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (21 bp):
AATATATATTATATATTTTAG
Found at i:412133 original size:25 final size:25
Alignment explanation
Indices: 412104--412164 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
412094 ATCATTGGCT
412104 GCGCACACTTCAAAGCCATCATAAA
1 GCGCACACTTCAAAGCCATCATAAA
412129 GCGCACACTTCAAAGCCATCATAAA
1 GCGCACACTTCAAAGCCATCATAAA
*
412154 GCACCACACTT
1 GC-GCACACTT
412165 AGTAGGGATG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 27 0.79
26 7 0.21
ACGTcount: A:0.38, C:0.34, G:0.11, T:0.16
Consensus pattern (25 bp):
GCGCACACTTCAAAGCCATCATAAA
Found at i:416467 original size:64 final size:64
Alignment explanation
Indices: 416399--416603 Score: 216
Period size: 64 Copynumber: 3.2 Consensus size: 64
416389 GCATTGATAA
** * *
416399 TGCATCGATGCA-CTCTTTTAA-AATAAAGACATCGAATGTAATTCATGCATCGATGCATAAGTA
1 TGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAATTCATGCATCGATGCATAAGGA
416462 G
64 G
* **
416463 TGCATCGATGCATCCCATTAATAATGAAACATCGAATGCAATTGGTGCATCGATGCATAAGGAG
1 TGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCGATGCATAAGGAG
** ** * ** * * * *
416527 TGCATCGATGCATCCCAGCAATAATATTACATCGAATACCTTTTATGCACCGATGCATCAGTAG
1 TGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCGATGCATAAGGAG
416591 TGCATCGATGCAT
1 TGCATCGATGCAT
416604 ACCTTCATTA
Statistics
Matches: 119, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
64 113 0.95
65 6 0.05
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (64 bp):
TGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCGATGCATAAGGAG
Found at i:419342 original size:64 final size:64
Alignment explanation
Indices: 419274--419478 Score: 216
Period size: 64 Copynumber: 3.2 Consensus size: 64
419264 GCATTGATAA
** * *
419274 TGCATCGATGCA-CTCTTTTAA-AATAAAGACATCGAATGTAATTCATGCATCGATGCATAAGTA
1 TGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAATTCATGCATCGATGCATAAGGA
419337 G
64 G
* **
419338 TGCATCGATGCATCCCATTAATAATGAAACATCGAATGCAATTGGTGCATCGATGCATAAGGAG
1 TGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCGATGCATAAGGAG
** ** * ** * * * *
419402 TGCATCGATGCATCCCAGCAATAATATTACATCGAATACCTTTTATGCACCGATGCATCAGTAG
1 TGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCGATGCATAAGGAG
419466 TGCATCGATGCAT
1 TGCATCGATGCAT
419479 ACCTTCATTA
Statistics
Matches: 119, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
64 113 0.95
65 6 0.05
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (64 bp):
TGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCGATGCATAAGGAG
Found at i:420130 original size:31 final size:31
Alignment explanation
Indices: 420092--420278 Score: 313
Period size: 31 Copynumber: 6.0 Consensus size: 31
420082 AGGGTCGAGG
420092 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
420123 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
420154 GTTTACCTATGTTCTTCGGGATATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
420185 GTTTACCTATGTTCTTCGAGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
420216 GTTTACCTATGTTCTTCGGGACATATGGATT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
420247 GTTTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
420278 G
1 G
420279 GTCCTTCGGG
Statistics
Matches: 147, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
31 146 0.99
32 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:425954 original size:2 final size:2
Alignment explanation
Indices: 425936--425982 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
425926 GTTTCTCCCG
* *
425936 TA TA CA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
425978 TA TA T
1 TA TA T
425983 CCCCTAGCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:431578 original size:18 final size:17
Alignment explanation
Indices: 431545--431604 Score: 66
Period size: 18 Copynumber: 3.4 Consensus size: 17
431535 TATAGTTTGA
*
431545 AATATATTATATTTTAG
1 AATATATTAGATTTTAG
*
431562 AATATATATAGATTTTAA
1 AATATAT-TAGATTTTAG
* *
431580 AATATATTATATTTTTG
1 AATATATTAGATTTTAG
431597 AAGTATAT
1 AA-TATAT
431605 GTTATATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
17 16 0.44
18 20 0.56
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (17 bp):
AATATATTAGATTTTAG
Found at i:431615 original size:22 final size:22
Alignment explanation
Indices: 431587--431748 Score: 148
Period size: 22 Copynumber: 7.1 Consensus size: 22
431577 TAAAATATAT
* *
431587 TATATTTTTGAAGTATATGTTA
1 TATATTTTTGAAATATATATTA
*
431609 TATATTTTTAAAAGTATATATATA
1 TATATTTTTGAAA-TATATAT-TA
*
431633 TATATAGTTTTTAAATATATATTA
1 TATAT--TTTTGAAATATATATTA
* *
431657 TATAGTTTTGAAATCTATATGTTA
1 TATATTTTTGAAA--TATATATTA
431681 TATATTTTT-AAATATATA-TA
1 TATATTTTTGAAATATATATTA
*
431701 TATAGTTTTTTAAATATATATTA
1 TATA-TTTTTGAAATATATATTA
* * * *
431724 TATAATTTTAAAATATGTATCA
1 TATATTTTTGAAATATATATTA
431746 TAT
1 TAT
431749 TATATATATA
Statistics
Matches: 118, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
20 6 0.05
21 10 0.08
22 44 0.37
23 15 0.13
24 29 0.25
25 7 0.06
26 7 0.06
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.52
Consensus pattern (22 bp):
TATATTTTTGAAATATATATTA
Found at i:431630 original size:18 final size:17
Alignment explanation
Indices: 431544--431631 Score: 61
Period size: 18 Copynumber: 4.7 Consensus size: 17
431534 ATATAGTTTG
431544 AAATATAT-TATATTTTA
1 AAATATATATAT-TTTTA
* *
431561 GAATATATATAGATTTTA
1 AAATATATATA-TTTTTA
431579 AAATATATTATATTTTTGA
1 AAATATA-TATATTTTT-A
*
431598 AGTATATGTTATATATTTTTA
1 A--A-AT-ATATATATTTTTA
431619 AAAGTATATATAT
1 AAA-TATATATAT
431632 ATATATAGTT
Statistics
Matches: 56, Mismatches: 6, Indels: 17
0.71 0.08 0.22
Matches are distributed among these distances:
17 7 0.12
18 25 0.45
19 8 0.14
21 3 0.05
22 11 0.20
23 2 0.04
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (17 bp):
AAATATATATATTTTTA
Found at i:431703 original size:18 final size:18
Alignment explanation
Indices: 431533--431633 Score: 73
Period size: 17 Copynumber: 5.4 Consensus size: 18
431523 TCGTATAGTT
* *
431533 TATATAGTTTGAAATATA
1 TATATATTTTTAAATATA
431551 T-TATA-TTTTAGAATATA
1 TATATATTTTTA-AATATA
* *
431568 TATAGATTTTAAAATATA
1 TATATATTTTTAAATATA
*
431586 T-TATATTTTTGAAGTATATGT
1 TATATATTTTT-AA--ATAT-A
431607 TATATATTTTTAAAAGTATA
1 TATATATTTTT-AAA-TATA
431627 TATATAT
1 TATATAT
431634 ATATAGTTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
16 4 0.06
17 18 0.27
18 13 0.20
19 4 0.06
20 12 0.18
21 4 0.06
22 11 0.17
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (18 bp):
TATATATTTTTAAATATA
Found at i:431815 original size:13 final size:13
Alignment explanation
Indices: 431797--431822 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
431787 ATTGTCAATA
431797 TTAATTTTATTTT
1 TTAATTTTATTTT
431810 TTAATTTTATTTT
1 TTAATTTTATTTT
431823 AGGTCCAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTAATTTTATTTT
Found at i:432816 original size:20 final size:20
Alignment explanation
Indices: 432791--432834 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
432781 TGTGGATCCG
432791 GTATAAATGGTAAGTTCGAT
1 GTATAAATGGTAAGTTCGAT
432811 GTATAAATGGTAAGTTCGAT
1 GTATAAATGGTAAGTTCGAT
432831 GTAT
1 GTAT
432835 CTGATCCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (20 bp):
GTATAAATGGTAAGTTCGAT
Found at i:433182 original size:21 final size:21
Alignment explanation
Indices: 433141--433181 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
433131 AAACATTAAA
*
433141 CTTCAACATTTTTTTCTTTTT
1 CTTCAACATTTTTTCCTTTTT
433162 CTTC-ACATTTTTTCCTTTTT
1 CTTCAACATTTTTTCCTTTTT
433182 TGGTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.12, C:0.22, G:0.00, T:0.66
Consensus pattern (21 bp):
CTTCAACATTTTTTCCTTTTT
Found at i:434408 original size:77 final size:79
Alignment explanation
Indices: 434314--434476 Score: 237
Period size: 77 Copynumber: 2.1 Consensus size: 79
434304 TTATTTAAAA
*
434314 TTTA-TTAAATTCTTATTTAATTAATT-CAAATTAAATATCCATT-AAAGACTTATAAT-ATGAA
1 TTTACTTAAACTCTTATTTAATT-ATTCCAAATTAAATATCCATTAAAAGACTTATAATCA-GAA
434375 TTACACTC-TTTAATG
64 TTACACTCTTTTAATG
* *
434390 TTTACTTAAACTCTTATTTAATTATTCCAAATTAAATATCCATTAAAAGAGTTGTAATCAGAATT
1 TTTACTTAAACTCTTATTTAATTATTCCAAATTAAATATCCATTAAAAGACTTATAATCAGAATT
*
434455 ACATTCTTTTAATG
66 ACACTCTTTTAATG
434469 TTTACTTA
1 TTTACTTA
434477 CTATATTCGG
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
76 7 0.09
77 34 0.44
78 21 0.27
79 16 0.21
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.45
Consensus pattern (79 bp):
TTTACTTAAACTCTTATTTAATTATTCCAAATTAAATATCCATTAAAAGACTTATAATCAGAATT
ACACTCTTTTAATG
Found at i:435597 original size:21 final size:22
Alignment explanation
Indices: 435571--435620 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
435561 CTAGTGTACC
435571 TAAAAATA-TAAAGAAAAAAAA
1 TAAAAATAGTAAAGAAAAAAAA
* **
435592 TAAAAA-AGTAAATAAAGTAAA
1 TAAAAATAGTAAAGAAAAAAAA
435613 TAAAAATA
1 TAAAAATA
435621 AATAATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (22 bp):
TAAAAATAGTAAAGAAAAAAAA
Found at i:438463 original size:12 final size:12
Alignment explanation
Indices: 438446--438515 Score: 52
Period size: 12 Copynumber: 5.6 Consensus size: 12
438436 AAATAAAGGA
438446 AATAAAAAAAAT
1 AATAAAAAAAAT
*
438458 AATAAAATAAAT
1 AATAAAAAAAAT
* *
438470 AATAAATCGAAAGT
1 AATAAA--AAAAAT
* *
438484 AAT-GAGAAAAT
1 AATAAAAAAAAT
438495 AAATAAAAATAAAT
1 -AATAAAAA-AAAT
438509 AATAAAA
1 AATAAAA
438516 TGATAACTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
11 5 0.11
12 20 0.44
13 10 0.22
14 10 0.22
ACGTcount: A:0.73, C:0.01, G:0.06, T:0.20
Consensus pattern (12 bp):
AATAAAAAAAAT
Found at i:439509 original size:13 final size:13
Alignment explanation
Indices: 439491--439524 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
439481 AGCATTGTGG
439491 AAAGAAAATAATA
1 AAAGAAAATAATA
*
439504 AAAGAAAATAATG
1 AAAGAAAATAATA
439517 AAAGAAAA
1 AAAGAAAA
439525 GTGGAGATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (13 bp):
AAAGAAAATAATA
Found at i:439664 original size:3 final size:3
Alignment explanation
Indices: 439656--439685 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
439646 TTCCTAAATA
*
439656 AAT AAT AAT AAT AAT AAT AAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
439686 TAAATTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:442946 original size:65 final size:65
Alignment explanation
Indices: 442868--442992 Score: 155
Period size: 65 Copynumber: 1.9 Consensus size: 65
442858 GCACCAATCT
* *
442868 ATGCATCGATGCACCATGAATTAAAATTG-AA-CATCGAATGCATTTCATGCATCGATGCACATA
1 ATGCACCGATGCACCAAGAATT-AAA-TGAAATCATCGAATGCATTTCATGCATCGATGCACATA
442931 CC
64 CC
* * ** *
442933 ATGCACCGATGCACTAAGGATTTTATGAAATCATCGAATGCATTTGATGCATCGATGCAC
1 ATGCACCGATGCACCAAGAATTAAATGAAATCATCGAATGCATTTCATGCATCGATGCAC
442993 CAGCCATGCA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
63 2 0.04
64 3 0.06
65 46 0.90
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (65 bp):
ATGCACCGATGCACCAAGAATTAAATGAAATCATCGAATGCATTTCATGCATCGATGCACATACC
Found at i:443000 original size:65 final size:65
Alignment explanation
Indices: 442897--443056 Score: 191
Period size: 65 Copynumber: 2.5 Consensus size: 65
442887 ATTAAAATTG
* * *
442897 AACATCGAATGCATTTCATGCATCGATGCA-CATACCATGCACCGATGCACTAAGGAT-TTTATG
1 AACATCGAATGCATTTAATGCATCGATGCACCATACCATGCACCAATACACTAAGGATATTT-TG
442960 A
65 A
* * * ** *
442961 AATCATCGAATGCATTTGATGCATCGATGCACCA-GCCATGCATCAATACACTCTGGCTATTTTG
1 AA-CATCGAATGCATTTAATGCATCGATGCACCATACCATGCACCAATACACTAAGGATATTTTG
443025 A
65 A
*
443026 AACATCGAATGCACTTAATGCATCGATGCAC
1 AACATCGAATGCATTTAATGCATCGATGCAC
443057 TCTTAGTGCA
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
64 29 0.35
65 49 0.59
66 5 0.06
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (65 bp):
AACATCGAATGCATTTAATGCATCGATGCACCATACCATGCACCAATACACTAAGGATATTTTGA
Found at i:443056 original size:17 final size:18
Alignment explanation
Indices: 443028--443072 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
443018 TATTTTGAAA
443028 CATCGAATGCA-CTTAATG
1 CATCG-ATGCACCTTAATG
*
443046 CATCGATGCACTCTTAGTG
1 CATCGATGCAC-CTTAATG
443065 CATCGATG
1 CATCGATG
443073 TACTAAGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 5 0.21
18 5 0.21
19 14 0.58
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (18 bp):
CATCGATGCACCTTAATG
Found at i:448899 original size:24 final size:24
Alignment explanation
Indices: 448871--448950 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
448861 CACTTAACAA
448871 TGCATCGATGCATCCCTTTGAATG
1 TGCATCGATGCATCCCTTTGAATG
* *
448895 TGCATCGATTCAT-CATATTG-A--
1 TGCATCGATGCATCCCT-TTGAATG
*
448916 TGCACCGATGCA-CGCC-TTGAATG
1 TGCATCGATGCATC-CCTTTGAATG
448939 TGCATCGATGCA
1 TGCATCGATGCA
448951 CGGGGTCATG
Statistics
Matches: 44, Mismatches: 6, Indels: 13
0.70 0.10 0.21
Matches are distributed among these distances:
20 3 0.07
21 11 0.25
22 1 0.02
23 14 0.32
24 15 0.34
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (24 bp):
TGCATCGATGCATCCCTTTGAATG
Found at i:451715 original size:65 final size:64
Alignment explanation
Indices: 451585--451726 Score: 173
Period size: 65 Copynumber: 2.2 Consensus size: 64
451575 ATTAAAATTG
451585 AACATCGAATGCATTTCATGCATCGATGCACATACCATGCACCGATGCACTGAGGATTTTATGAA
1 AACATCGAATGCATTTCATGCATCGATGCACATACCATGCACCGATGCACTGAGGATTTTATG-A
* * * * * *
451650 AACATCGAATGCATTTGATGCATCGATGTACCA-GCCATGCATCGATGCACTCTA-GCTATTT-T
1 AACATCGAATGCATTTCATGCATCGATGCA-CATACCATGCACCGATGCACT-GAGGAT-TTTAT
451712 GA
63 GA
451714 AACATCGAATGCA
1 AACATCGAATGCA
451727 CTCTTAGTGC
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
64 14 0.21
65 48 0.71
66 6 0.09
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (64 bp):
AACATCGAATGCATTTCATGCATCGATGCACATACCATGCACCGATGCACTGAGGATTTTATGA
Found at i:452616 original size:12 final size:12
Alignment explanation
Indices: 452599--452623 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
452589 CGATTTTATG
452599 AAAAAATTAATA
1 AAAAAATTAATA
452611 AAAAAATTAATA
1 AAAAAATTAATA
452623 A
1 A
452624 TATATATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAAATTAATA
Found at i:459279 original size:23 final size:23
Alignment explanation
Indices: 459249--459295 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
459239 AATAGCAGTT
459249 TGGAGAATGTTGAACCAGCCAAG
1 TGGAGAATGTTGAACCAGCCAAG
* *
459272 TGGAGAATGTTGAACGAGTCAAG
1 TGGAGAATGTTGAACCAGCCAAG
459295 T
1 T
459296 TCTAAAGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (23 bp):
TGGAGAATGTTGAACCAGCCAAG
Found at i:464449 original size:150 final size:149
Alignment explanation
Indices: 464153--464446 Score: 475
Period size: 150 Copynumber: 2.0 Consensus size: 149
464143 ACCGATTTTA
* * * *
464153 TTCACCAATTTAAAAATTAAGAGTAGATGGTTCCTAACGTTATCGATCCGTTCGATTTTAGTCTT
1 TTCAACAATTTAAAAATTAAGAGTAAATAGTTCCTAACGTTATCAATCCGTTCGATTTTAGTCTT
*
464218 TCACTGTCAATTTAAGTTGACCTTTTAACAAAAGTATTACATGATAATTAATTTTGTTTTTAAAT
66 TCACTGTCAATTTAAGTTGACCTTTTAACAAAAGTATTACATGATAATTAA-TTTGTTTTAAAAT
464283 TATGTGCTCTCCTCCTCTTG
130 TATGTGCTCTCCTCCTCTTG
*
464303 TTCAACAATTTAAAAATTAATAGTAAATAGTTCCTAACGTTATCAATCCGTTCGATTTTAGTCTT
1 TTCAACAATTTAAAAATTAAGAGTAAATAGTTCCTAACGTTATCAATCCGTTCGATTTTAGTCTT
* * * *
464368 TCACTGTTAATTTCAGTTGACCTTTTAAGAAAAGTATTACGTGATAATTAA-TT-TTTTAAAATT
66 TCACTGTCAATTTAAGTTGACCTTTTAACAAAAGTATTACATGATAATTAATTTGTTTTAAAATT
464431 ATGTGCTCTCCTCCTC
131 ATGTGCTCTCCTCCTC
464447 CTCCTCCTCC
Statistics
Matches: 134, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
147 25 0.19
148 2 0.01
150 107 0.80
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (149 bp):
TTCAACAATTTAAAAATTAAGAGTAAATAGTTCCTAACGTTATCAATCCGTTCGATTTTAGTCTT
TCACTGTCAATTTAAGTTGACCTTTTAACAAAAGTATTACATGATAATTAATTTGTTTTAAAATT
ATGTGCTCTCCTCCTCTTG
Found at i:464706 original size:113 final size:113
Alignment explanation
Indices: 464508--465492 Score: 1550
Period size: 113 Copynumber: 8.8 Consensus size: 113
464498 TTAAAGTAGA
* *
464508 AAGGCCAGTGAGATTATTAATAGGGATGCCAAACAACAAAAATAATTTTTTGGGTCAACAGGGAC
1 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACAGGGAC
*
464573 AAACCCAAAACCACAAAAATAATATGTGTACATAGTAGGAACAACAGG
66 AAACCCAAAACCACAAAAATAATATGTGTACAGAGTAGGAACAACAGG
*
464621 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTAAACAGGGAC
1 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACAGGGAC
*
464686 AAACCCAAAACCATAAAAATAATATGTGTACAGAGTAGGAACAACAGG
66 AAACCCAAAACCACAAAAATAATATGTGTACAGAGTAGGAACAACAGG
* * * *
464734 AAGGCAAGTGATATTATTAATAGGGATGCCACAGAAAAAAAATAATTTTTTGGGTCAACAGGGAC
1 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACAGGGAC
* * * * *
464799 AAACCCAAAATCATAAAAATAATCTGTGTACATAGTAGGAATAACAGG
66 AAACCCAAAACCACAAAAATAATATGTGTACAGAGTAGGAACAACAGG
*
464847 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACATGGAC
1 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACAGGGAC
* *
464912 AAACCCAAAACCACAAAAATAATCTGTGAACAGAGTAGGAACAACAGG
66 AAACCCAAAACCACAAAAATAATATGTGTACAGAGTAGGAACAACAGG
* * *
464960 AAGGCCATTGATATTATTAATAGGGATGTCATACAATAAAAATAATTTTTTGGGTCAACAGGGAC
1 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACAGGGAC
* * *
465025 AAACCCAAAACCACAAAAATAATCTGTGTACATAGTATGAACAACAGG
66 AAACCCAAAACCACAAAAATAATATGTGTACAGAGTAGGAACAACAGG
* * * * *
465073 AAGGCCATTGATATTATTAATAGGGATGCCATATAACAAAAATATTTTTTTGGGTCAATAAGGAC
1 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACAGGGAC
* *
465138 AAACCCAAAACCAC-AAAATAATCTGTGTACATAGTAGGAACAACAGG
66 AAACCCAAAACCACAAAAATAATATGTGTACAGAGTAGGAACAACAGG
* *
465185 AAGGCCAGTGAGATTATTAATAGGGATGCCAAACAACAAAAATAATTTTTTGGGTCAACAGGGAC
1 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACAGGGAC
465250 AAACCCAAAACCACAAAAAT-A-ATGTGTACAGAGTAGGAACAACAGG
66 AAACCCAAAACCACAAAAATAATATGTGTACAGAGTAGGAACAACAGG
* * *
465296 AAGGCCAGTGATAATATTAATAGGGATGCCATACAATAAAAATAATTTTTTGGGTTAACAGGGAC
1 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACAGGGAC
* * *
465361 AAACCCAAAACCAC-AAAA-AATAATGTGTAGAGAGTAGAAACAATAGG
66 AAACCCAAAACCACAAAAATAAT-ATGTGTACAGAGTAGGAACAACAGG
* *
465408 AAGG-CAATGATATTATTAATAGGGATGCCATACAACAAAAATAGTTTTTTTGGGTCAACAGGGA
1 AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATA-ATTTTTTGGGTCAACAGGGA
465472 CAAACCCAAAACCACAAAAAT
65 CAAACCCAAAACCACAAAAAT
465493 GGGATGGCAA
Statistics
Matches: 805, Mismatches: 60, Indels: 13
0.92 0.07 0.01
Matches are distributed among these distances:
110 5 0.01
111 133 0.17
112 164 0.20
113 503 0.62
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.22
Consensus pattern (113 bp):
AAGGCCAGTGATATTATTAATAGGGATGCCATACAACAAAAATAATTTTTTGGGTCAACAGGGAC
AAACCCAAAACCACAAAAATAATATGTGTACAGAGTAGGAACAACAGG
Found at i:469880 original size:35 final size:35
Alignment explanation
Indices: 469762--469901 Score: 163
Period size: 36 Copynumber: 3.9 Consensus size: 35
469752 TGAATAAGAA
* * *
469762 GAACGAAAGGAAGCGTCAGCACTTTCGATTCAAAAT
1 GAACGAAAGGAAGCATCGGCACTTTCGATTC-AAGT
* * * *
469798 GAACGGAAGTAAGCATCGACACTTTCGATTCAAGAA
1 GAACGAAAGGAAGCATCGGCACTTTCGATTCAAG-T
** *
469834 GAACGAAAGGAAATATCGGCAGTTTCGATTCAAGT
1 GAACGAAAGGAAGCATCGGCACTTTCGATTCAAGT
*
469869 GAACGAAAGGAAGCATCCGCACTTTCGATTCAA
1 GAACGAAAGGAAGCATCGGCACTTTCGATTCAA
469902 TTGTTTATCT
Statistics
Matches: 85, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
35 31 0.36
36 54 0.64
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (35 bp):
GAACGAAAGGAAGCATCGGCACTTTCGATTCAAGT
Found at i:471658 original size:14 final size:14
Alignment explanation
Indices: 471639--471666 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
471629 TTTGTATTTT
471639 GTTTTTACAGAAAA
1 GTTTTTACAGAAAA
471653 GTTTTTACAGAAAA
1 GTTTTTACAGAAAA
471667 TTTAACATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
GTTTTTACAGAAAA
Found at i:475485 original size:168 final size:166
Alignment explanation
Indices: 475086--475689 Score: 635
Period size: 168 Copynumber: 3.6 Consensus size: 166
475076 ATTGATCGAC
* * * * **
475086 TTACATGTGTTTCACTATATATGATTAAATAAGGTAATATTTATTCTATTTATGAATCTTTAAAA
1 TTACACGTGCTTCATTATATATGATTAAATAAGATAATATTTATTCTATTTATGAATCTTTAGGA
**
475151 GTATCTTGTAACGAGTTTATTGACTCAT--ATGTTCCATTATATAATTAAACTAATT-TTTCGTT
66 GTATCTTGTAACGAGTTTATCAACTCATACATGTTCCATTATATAATTAAA-T--TTATTT--TT
* * * *
475213 TCTTGTACATATGAATGTCATAAGCTGTAATGAGTTTATCAA
126 T-TTGTATATATGAATATCATAAGATGTAATGAGTTTATCAT
* * *
475255 TAACATGTGCTAT-ATTATATATGACTAAATAAGATAA-AGTTTATTCTATTTATGAATCTTTAG
1 TTACACGTGCT-TCATTATATATGATTAAATAAGATAATA-TTTATTCTATTTATGAATCTTTAG
* * * *
475318 GAGTATCTTGTAACAAGTTTATCGACTTATACATATTCCATTATATAATTAAATTTATTTTTTAT
64 GAGTATCTTGTAACGAGTTTATCAACTCATACATGTTCCATTATATAATTAAATTTATTTTTT-T
*
475383 TGTATATATGAATATCATAAGTTGTAATGAGTTTATCGAT
128 TGTATATATGAATATCATAAGATGTAATGAGTTTATC-AT
* * * * *
475423 TTCCACGTGCTTCATTATATATGATTGAATAAGATAACATTTATTCTGTTTATGTATCTTTAGGA
1 TTACACGTGCTTCATTATATATGATTAAATAAGATAATATTTATTCTATTTATGAATCTTTAGGA
* * *
475488 TTATCTTGTAACGAGTTTATTAACTCATACATGTTCCATTATATAAATTAATTAATTTATCTTTT
66 GTATCTTGTAACGAGTTTATCAACTCATACATGTTCCATTATAT-AATT-A--AATTTATTTTTT
* * *
475553 TTGTATATATGAATACCGTAAGATGTAATGAATTTATCAAT
127 TTGTATATATGAATATCATAAGATGTAATGAGTTTATC-AT
* * * * * * * * *
475594 TTACACATACTTTATTATAAATGATTGAATAAGGTAATA-TTATTTTATTTATGACTCTATAGGA
1 TTACACGTGCTTCATTATATATGATTAAATAAGATAATATTTATTCTATTTATGAATCTTTAGGA
* * * *
475658 ATATTTTGTAACTAGCTTATCAACTCATACAT
66 GTATCTTGTAACGAGTTTATCAACTCATACAT
475690 TTTTTTTGCT
Statistics
Matches: 371, Mismatches: 52, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
167 39 0.11
168 96 0.26
169 87 0.23
170 50 0.13
171 88 0.24
172 11 0.03
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.44
Consensus pattern (166 bp):
TTACACGTGCTTCATTATATATGATTAAATAAGATAATATTTATTCTATTTATGAATCTTTAGGA
GTATCTTGTAACGAGTTTATCAACTCATACATGTTCCATTATATAATTAAATTTATTTTTTTTGT
ATATATGAATATCATAAGATGTAATGAGTTTATCAT
Found at i:480955 original size:2 final size:2
Alignment explanation
Indices: 480948--480979 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
480938 TCTCCATGTA
480948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
480980 TTTCGTACGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:484053 original size:12 final size:11
Alignment explanation
Indices: 484021--484063 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
484011 CCAGACTATT
484021 AAAAAAATTAA
1 AAAAAAATTAA
**
484032 AATCAAATTAGA
1 AAAAAAATTA-A
484044 AAAAAAATTAA
1 AAAAAAATTAA
484055 ACAAAAAAT
1 A-AAAAAAT
484064 CATGGTAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (11 bp):
AAAAAAATTAA
Found at i:489139 original size:9 final size:9
Alignment explanation
Indices: 489125--489153 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
489115 TGTGTTAGAG
489125 GAAAAAAAT
1 GAAAAAAAT
489134 G-AAAAAAT
1 GAAAAAAAT
489142 GAAAAAAAT
1 GAAAAAAAT
489151 GAA
1 GAA
489154 GAATAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (9 bp):
GAAAAAAAT
Found at i:489560 original size:18 final size:19
Alignment explanation
Indices: 489499--489568 Score: 56
Period size: 18 Copynumber: 3.7 Consensus size: 19
489489 AAGTATATAT
* *
489499 ATATATAAATAATAATATA
1 ATATATAAATAATAACAAA
* *
489518 GTAT-TAAA-AATAACCAA
1 ATATATAAATAATAACAAA
489535 ATGAATATAAATAATAA-AAA
1 AT--ATATAAATAATAACAAA
*
489555 ATATATATATAATA
1 ATATATAAATAATA
489569 TATATAGTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
17 7 0.17
18 15 0.38
19 5 0.12
20 8 0.20
21 5 0.12
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (19 bp):
ATATATAAATAATAACAAA
Found at i:490087 original size:37 final size:37
Alignment explanation
Indices: 490046--490142 Score: 131
Period size: 37 Copynumber: 2.6 Consensus size: 37
490036 GGATCCTATC
* *
490046 TTTAGGAGTTTAAATCATAGTAGAACTCTATCATATT
1 TTTAGGAGTTTGAATCCTAGTAGAACTCTATCATATT
* * * * *
490083 TTTAGAAGTTTGAATCCTAGCAAAATTCTATCCTATT
1 TTTAGGAGTTTGAATCCTAGTAGAACTCTATCATATT
490120 TTTAGGAGTTTGAATCCTAGTAG
1 TTTAGGAGTTTGAATCCTAGTAG
490143 GACGAAAAGG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.40
Consensus pattern (37 bp):
TTTAGGAGTTTGAATCCTAGTAGAACTCTATCATATT
Found at i:491198 original size:106 final size:106
Alignment explanation
Indices: 490873--492341 Score: 2102
Period size: 106 Copynumber: 14.0 Consensus size: 106
490863 GCAATGTTCT
* * * * *
490873 GAGTCCTATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAACTGGGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* * * * * *
490937 ATCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTC
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
490979 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T--GAA-AT-TTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * * * *
491038 TCAGCCGCCCCTTCGTCTTGAAGTT-AAGCTTGTGTT-TCCTTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAA-CTTGCGTTGT-C-TG
* * * *
491080 G-GTTCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
491144 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
491185 GAGTCCAATATCCTACGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
491250 TCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
491291 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
491356 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTATCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
491397 AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
491462 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
491503 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
491568 CCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
** *
491609 GAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
491674 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* ** *
491715 GAGTCCAAAATCCTTCTTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
491780 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGAGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
491821 GAGTCCAATATCCTTCGC--T---G-TG-AA---G-T-TGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
491874 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
491915 GAGTCCAATATCCTTCGTTATGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
491980 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
492021 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * *
492086 CCAGCTGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
492127 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGATCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
492192 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
492233 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATT-ATTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * * *
492297 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
492338 GAGT
1 GAGT
492342 GGCACGATAT
Statistics
Matches: 1236, Mismatches: 102, Indels: 51
0.89 0.07 0.04
Matches are distributed among these distances:
94 81 0.07
95 1 0.00
96 2 0.00
99 6 0.00
100 79 0.06
101 8 0.01
102 4 0.00
104 6 0.00
105 55 0.04
106 990 0.80
107 4 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:491850 original size:43 final size:43
Alignment explanation
Indices: 491789--491944 Score: 132
Period size: 43 Copynumber: 3.4 Consensus size: 43
491779 ACCAGCGGTC
491789 CCTTCGTTGTGAAGTTGAACTTGAGTTGTCTGGAGTCCAATAT
1 CCTTCGTTGTGAAGTTGAACTTGAGTTGTCTGGAGTCCAATAT
* * * * ** ***
491832 CCTTCGCTGTGAAGTTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGT
1 CCTTCGTTGTGAAGTTGAACTT--G-AGTTG--TCTGGA-GTCCA-ATAT
* *
491882 CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
1 -CCTTCGTTGTGAAGTTGAACTTGAGTTGTCTGGAGTCCAATAT
*
491926 CCTTCGTTATGAAGTTGAA
1 CCTTCGTTGTGAAGTTGAA
491945 ATTGGCTCTG
Statistics
Matches: 83, Mismatches: 22, Indels: 16
0.69 0.18 0.13
Matches are distributed among these distances:
43 37 0.45
44 1 0.01
45 4 0.05
46 9 0.11
48 8 0.10
49 4 0.05
50 1 0.01
51 19 0.23
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.35
Consensus pattern (43 bp):
CCTTCGTTGTGAAGTTGAACTTGAGTTGTCTGGAGTCCAATAT
Found at i:493188 original size:22 final size:22
Alignment explanation
Indices: 493166--493235 Score: 104
Period size: 22 Copynumber: 3.2 Consensus size: 22
493156 TTATGTTTGG
*
493166 TCAAAGGTTTGGCATTTGATGG
1 TCAAAGGTTTGGCATTTGATGC
493188 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
* **
493210 TCATAGGTTTTCCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
493232 TCAA
1 TCAA
493236 CGGTATGATG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.23, C:0.14, G:0.24, T:0.39
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:493894 original size:19 final size:19
Alignment explanation
Indices: 493862--493918 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 19
493852 TCTTTTTGAT
*
493862 TTTTGTTCTTTCTTTTTTCC
1 TTTTGTTCTCTCTTTTTT-C
493882 TTTTGTT-TCTCTTTTTTC
1 TTTTGTTCTCTCTTTTTTC
*
493900 TTTT-TTCT-TTTTTTTTC
1 TTTTGTTCTCTCTTTTTTC
493917 TT
1 TT
493919 GATTGGATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 12 0.35
18 6 0.18
19 9 0.26
20 7 0.21
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.81
Consensus pattern (19 bp):
TTTTGTTCTCTCTTTTTTC
Found at i:498308 original size:4 final size:4
Alignment explanation
Indices: 498299--498328 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
498289 ATAAAAGGAA
498299 AAAT AAAT AAAT AAAT AAAT AAAT GAAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT A
498329 TTAAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:499201 original size:37 final size:37
Alignment explanation
Indices: 499160--499264 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
499150 GTGCTTGTGG
* * *
499160 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* * * *
499197 ATCCTATTTTTAGAAGTTTGAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
499234 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
499265 GACGAAAAGG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:500981 original size:169 final size:170
Alignment explanation
Indices: 500701--501041 Score: 659
Period size: 169 Copynumber: 2.0 Consensus size: 170
500691 TTCCAAATTT
500701 GTTCAACAAGCAAGTAAAACATTAATAATTACATGCCACTAATAAAGTCAACATTTCATCTTAGG
1 GTTCAACAAGCAAGTAAAACATTAATAATTACATGCCACTAATAAAGTCAACATTTCATCTTAGG
500766 ATGTCTTACTGATATTAATATACACTCATTGATGCTTGATGTCAACTTGAACTCTTTATTCCACT
66 ATGTCTTACTGATATTAATATACACTCATTGATGCTTGATGTCAACTTGAACTCTTTATTCCACT
500831 ACTGGTTTTTTACCTACGCGTGAAAATCATCACACGCTAA
131 ACTGGTTTTTTACCTACGCGTGAAAATCATCACACGCTAA
500871 GTTCAACAAAGCAAGTAAAACATTAATAATTACATGCCACTAAT-AAGTCAACA-TTCATCTTAG
1 GTTCAAC-AAGCAAGTAAAACATTAATAATTACATGCCACTAATAAAGTCAACATTTCATCTTAG
500934 GATGTCTTACTGATATTAATATACACTCATTGATGCTTGATGTCAACTTGAACTCTTTATTCCAC
65 GATGTCTTACTGATATTAATATACACTCATTGATGCTTGATGTCAACTTGAACTCTTTATTCCAC
500999 TACTGGTTTTTTACCTACGCGTGAAAATCATCACACGCTAA
130 TACTGGTTTTTTACCTACGCGTGAAAATCATCACACGCTAA
501040 GT
1 GT
501042 ATAAACTTAG
Statistics
Matches: 170, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
169 118 0.69
170 16 0.09
171 36 0.21
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (170 bp):
GTTCAACAAGCAAGTAAAACATTAATAATTACATGCCACTAATAAAGTCAACATTTCATCTTAGG
ATGTCTTACTGATATTAATATACACTCATTGATGCTTGATGTCAACTTGAACTCTTTATTCCACT
ACTGGTTTTTTACCTACGCGTGAAAATCATCACACGCTAA
Found at i:501445 original size:24 final size:24
Alignment explanation
Indices: 501413--501458 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
501403 TCTTCCAAAT
501413 GATGTATAAAACATCTATGTACAC
1 GATGTATAAAACATCTATGTACAC
501437 GATGTATAAAACATCTATGTAC
1 GATGTATAAAACATCTATGTAC
501459 CATATCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.30
Consensus pattern (24 bp):
GATGTATAAAACATCTATGTACAC
Found at i:508835 original size:43 final size:43
Alignment explanation
Indices: 508768--509252 Score: 729
Period size: 43 Copynumber: 11.2 Consensus size: 43
508758 AATGGATTAA
* * *
508768 TTACAGTTTCCCCATGTTCCTTTGTTTTGTGAAAGGGTAAGCC
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
* *
508811 TTACAGTTTCCCCAAGTTCGTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
* *
508854 TTACAATTTCCCCCAGGTTCCTTTGCTGTGTGCAAGGGTAAGCC
1 TTACAGTTT-CCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
* * *
508898 TTACAGTTTCCCCAAGTTCCTTTGTTGTATGCAAGGATAAGCC
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
*
508941 TTACAGTTTCCCCAGGTTTCTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
*
508984 TTACAGTTTCCCCCAGGTTCCTTTGTTGTGTACAAGGGTAAGCC
1 TTACAGTTT-CCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
*
509028 TTACAGTTTCCCCATGTTCCTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
* * *
509071 TTACAGCTTCCTCAGGTTCCTTTGTTGTGCT-CAAGGATAAGCC
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTG-TGCAAGGGTAAGCC
*
509114 TTACAGTTTTCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
*
509157 TTACAGTTTCCCCTAGGTTCCTTTGATGTGTGCAAGGGTAAGCC
1 TTACAGTTTCCCC-AGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
* * * *
509201 TTACAGTTTCCTCAGGTTCCTTTGCTGTGTGAAAGGGTAGGCC
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
509244 TTACAGTTT
1 TTACAGTTT
509253 TCTAGGGAAA
Statistics
Matches: 402, Mismatches: 35, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
42 1 0.00
43 279 0.69
44 122 0.30
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (43 bp):
TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
Found at i:509059 original size:173 final size:173
Alignment explanation
Indices: 508768--509252 Score: 758
Period size: 173 Copynumber: 2.8 Consensus size: 173
508758 AATGGATTAA
* * * * *
508768 TTACAGTTTCCCCATGTTCCTTTGTTTTGTGAAAGGGTAAGCCTTACAGTTT-CCCCAAGTTCGT
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCT
*
508832 TTGTTGTGTGCAAGGGTAAGCCTTACAATTTCCCCCAGGTTCCTTTGCTGTGTGCAAGGGTAAGC
66 TTGTTGTGTGCAAGGGTAAGCCTTACAGTTT-CCCCAGGTTCCTTTGCTGTGTGCAAGGGTAAGC
508897 CTTACAGTTTCCCCAAGTTCCTTTGTTGT-ATGCAAGGATAAGCC
130 CTTACAGTTTCCCCAAGTTCCTTTGTTGTGAT-CAAGGATAAGCC
*
508941 TTACAGTTTCCCCAGGTTTCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCT
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCT
* * *
509006 TTGTTGTGTACAAGGGTAAGCCTTACAGTTTCCCCATGTTCCTTTGTTGTGTGCAAGGGTAAGCC
66 TTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCAGGTTCCTTTGCTGTGTGCAAGGGTAAGCC
* * * *
509071 TTACAGCTTCCTCAGGTTCCTTTGTTGTGCTCAAGGATAAGCC
131 TTACAGTTTCCCCAAGTTCCTTTGTTGTGATCAAGGATAAGCC
* *
509114 TTACAGTTTTCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCTAGGTTCCT
1 TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCT
* * * *
509179 TTGATGTGTGCAAGGGTAAGCCTTACAGTTTCCTCAGGTTCCTTTGCTGTGTGAAAGGGTAGGCC
66 TTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCAGGTTCCTTTGCTGTGTGCAAGGGTAAGCC
509244 TTACAGTTT
131 TTACAGTTT
509253 TCTAGGGAAA
Statistics
Matches: 285, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
173 245 0.86
174 40 0.14
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (173 bp):
TTACAGTTTCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCT
TTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCAGGTTCCTTTGCTGTGTGCAAGGGTAAGCC
TTACAGTTTCCCCAAGTTCCTTTGTTGTGATCAAGGATAAGCC
Found at i:509254 original size:130 final size:130
Alignment explanation
Indices: 508768--509252 Score: 749
Period size: 130 Copynumber: 3.7 Consensus size: 130
508758 AATGGATTAA
* * * *
508768 TTACAGTTTCCCCATGTTCCTTTGTTTTGTGAAAGGGTAAGCCTTACAGTTTCCCCAAGTTCGTT
1 TTACAGTTTCCCCATGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCAGGTTCCTT
* *
508833 TGTTGTGTGCAAGGGTAAGCCTTACAATTTCCCCCAGGTTCCTTTGCTGTGTGCAAGGGTAAGCC
66 TGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
* * * *
508898 TTACAGTTTCCCCAAGTTCCTTTGTTGTATGCAAGGATAAGCCTTACAGTTTCCCCAGGTTTCTT
1 TTACAGTTTCCCCATGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCAGGTTCCTT
*
508963 TGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCTTTGTTGTGTACAAGGGTAAGCC
66 TGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
* *
509028 TTACAGTTTCCCCATGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGCTTCCTCAGGTTCCTT
1 TTACAGTTTCCCCATGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCAGGTTCCTT
* *
509093 TGTTGTGCT-CAAGGATAAGCCTTACAGTTT-TCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGC
66 TGTTGTG-TGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGC
509156 C
130 C
* * *
509157 TTACAGTTTCCCCTAGGTTCCTTTGATGTGTGCAAGGGTAAGCCTTACAGTTTCCTCAGGTTCCT
1 TTACAGTTTCCCC-ATGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCAGGTTCCT
* * *
509222 TTGCTGTGTGAAAGGGTAGGCCTTACAGTTT
65 TTGTTGTGTGCAAGGGTAAGCCTTACAGTTT
509253 TCTAGGGAAA
Statistics
Matches: 325, Mismatches: 27, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
129 46 0.14
130 278 0.86
131 1 0.00
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (130 bp):
TTACAGTTTCCCCATGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCAGGTTCCTT
TGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCC
Found at i:519797 original size:37 final size:37
Alignment explanation
Indices: 519721--519797 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
519711 TTTTTATATT
*
519721 TTTAATTTTGTAAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
* * *
519758 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTAT-CAA
519795 TTT
1 TTT
519798 GTAATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 13 0.37
37 22 0.63
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (37 bp):
TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
Found at i:519979 original size:20 final size:20
Alignment explanation
Indices: 519943--519980 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
519933 ATCATATTCC
**
519943 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
519963 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
519981 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:523782 original size:18 final size:18
Alignment explanation
Indices: 523755--523815 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 18
523745 ACTTAGATTT
*
523755 ATTTTTATTTTTACATTC
1 ATTTTCATTTTTACATTC
523773 ATTTTCATTTCTGT-C-TTC
1 ATTTTCATTT-T-TACATTC
*
523791 ATATTCA---TTACATTC
1 ATTTTCATTTTTACATTC
523806 ATTTTCATTT
1 ATTTTCATTT
523816 CCATCTTCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 14
0.66 0.06 0.28
Matches are distributed among these distances:
13 1 0.03
14 2 0.06
15 9 0.27
18 18 0.55
19 2 0.06
20 1 0.03
ACGTcount: A:0.21, C:0.16, G:0.02, T:0.61
Consensus pattern (18 bp):
ATTTTCATTTTTACATTC
Found at i:523844 original size:33 final size:33
Alignment explanation
Indices: 523765--523828 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
523755 ATTTTTATTT
**
523765 TTACATTCATTTTCATTTCTGTCTTCATATTCA
1 TTACATTCATTTTCATTTCCATCTTCATATTCA
523798 TTACATTCATTTTCATTTCCATCTTCATATT
1 TTACATTCATTTTCATTTCCATCTTCATATT
523829 TATTGCATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.22, C:0.22, G:0.02, T:0.55
Consensus pattern (33 bp):
TTACATTCATTTTCATTTCCATCTTCATATTCA
Found at i:524009 original size:3 final size:3
Alignment explanation
Indices: 523997--524058 Score: 72
Period size: 3 Copynumber: 19.3 Consensus size: 3
523987 AAAAAACATT
523997 TTA TTA -TA TTA TTA TTTA TTTA TTA TTA TTA TTA CTTA TTA TTAA TTAA
1 TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA -TTA TTA TT-A TT-A
524046 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
524059 ATTTGTGCAG
Statistics
Matches: 55, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
2 2 0.04
3 36 0.65
4 17 0.31
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:524038 original size:27 final size:26
Alignment explanation
Indices: 523997--524058 Score: 90
Period size: 27 Copynumber: 2.4 Consensus size: 26
523987 AAAAAACATT
* *
523997 TTATTA-TATTATTATTTATTTATTA
1 TTATTATTATTATTATTAATTAATTA
524022 TTATTATTACTTATTATTAATTAATTA
1 TTATTATTA-TTATTATTAATTAATTA
524049 TTATTATTAT
1 TTATTATTAT
524059 ATTTGTGCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 6 0.18
26 3 0.09
27 24 0.73
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (26 bp):
TTATTATTATTATTATTAATTAATTA
Found at i:525522 original size:12 final size:13
Alignment explanation
Indices: 525500--525528 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
525490 GAATCGAATG
525500 TTTTAAATTTTAA
1 TTTTAAATTTTAA
525513 TTTT-AATTTTAA
1 TTTTAAATTTTAA
525525 TTTT
1 TTTT
525529 CGCAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTAAATTTTAA
Found at i:529439 original size:106 final size:105
Alignment explanation
Indices: 529285--529960 Score: 1002
Period size: 106 Copynumber: 6.6 Consensus size: 105
529275 AAAAGTTGTC
* *
529285 TGTCAACAAACACATTTCCCGATTTCAGATCCAATTTCAACTTCACAACGAAGGATATTGGACTC
1 TGTCAATAAACA-ATTTCCC-ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
*
529350 CAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGT
64 CAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
529392 TGTCAATAAACAATTTCCCGATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
1 TGTCAATAAACAATTTCCC-ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
529457 AGACAACGCAAGTTCAACTTCACGACGAATGGACCACTGGT
65 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
529498 TGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
1 TGTCAATAAACAATTTCCC-ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
529563 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
65 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
*
529604 TGTCAATAAAC-A------ATTTC----CCAATTTCAACTTCACAACGAAGGATATTAGACTCCA
1 TGTCAATAAACAATTTCCCATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
529658 AACAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGT
66 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
529698 TGTCAATAAAC-A------ATTTC----CCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
1 TGTCAATAAACAATTTCCCATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
529752 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
66 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
*
529792 TGTCAATAAACAATTTCCCGATTTCAGAGCCAATTTCAACTCCACAACGAAGGATATTGGACTCC
1 TGTCAATAAACAATTTCCC-ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
529857 AGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGT
65 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* * **
529898 TGTCAATAAACAATTTCCCAGTTCCAGAGTCAATTTCAACTTCACGGC-AGAGGATATTGGACT
1 TGTCAATAAACAATTTCCCA-TTTCAGAGCCAATTTCAACTTCACAACGA-AGGATATTGGACT
529961 TGGAACAATA
Statistics
Matches: 534, Mismatches: 21, Indels: 29
0.91 0.04 0.05
Matches are distributed among these distances:
94 176 0.33
95 1 0.00
98 5 0.01
102 5 0.01
105 3 0.01
106 333 0.62
107 11 0.02
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (105 bp):
TGTCAATAAACAATTTCCCATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
Found at i:529593 original size:43 final size:43
Alignment explanation
Indices: 529532--529781 Score: 167
Period size: 43 Copynumber: 5.4 Consensus size: 43
529522 CAGAGCCAAT
*
529532 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAG
* *** ** * * *
529575 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAAT
1 TTCAACTTCACAACGAA-GGA-TATTGG-ACTC--CAAACAA---CGCAAG
*
529626 TTCAACTTCACAACGAAGGATATTAGACTCCAAACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAG
* * * ** * * *
529669 TTCAACTTCACGACGAAGGGACCACTGGTTGTCAATAAACAATTTCCCAAT
1 TTCAACTTCACAACGAA-GGA-TATTGG-ACTC--CAAACAA---CGCAAG
*
529720 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAG
*
529763 TTCAACTTCACGACGAAGG
1 TTCAACTTCACAACGAAGG
529782 GACCGCTGGT
Statistics
Matches: 152, Mismatches: 39, Indels: 32
0.68 0.17 0.14
Matches are distributed among these distances:
43 58 0.38
44 6 0.04
45 6 0.04
46 15 0.10
48 15 0.10
49 6 0.04
50 6 0.04
51 40 0.26
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.22
Consensus pattern (43 bp):
TTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAG
Found at i:529730 original size:51 final size:51
Alignment explanation
Indices: 529669--529817 Score: 143
Period size: 51 Copynumber: 3.1 Consensus size: 51
529659 ACAACGCAAG
529669 TTCAACTTCACGACGAAGGGACCACTGGTTGTCAATAAACAATTTCCCAAT
1 TTCAACTTCACGACGAAGGGACCACTGGTTGTCAATAAACAATTTCCCAAT
* * * ** * * * *
529720 TTCAACTTCACAACGAA-GGA-TATTGG-ACTC--CAGACAA---CGCAAG
1 TTCAACTTCACGACGAAGGGACCACTGGTTGTCAATAAACAATTTCCCAAT
* *
529763 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCGAT
1 TTCAACTTCACGACGAAGGGACCACTGGTTGTCAATAAACAATTTCCCAAT
529814 TTCA
1 TTCA
529818 GAGCCAATTT
Statistics
Matches: 70, Mismatches: 20, Indels: 16
0.66 0.19 0.15
Matches are distributed among these distances:
43 20 0.29
44 3 0.04
45 3 0.04
46 7 0.10
48 7 0.10
49 4 0.06
50 3 0.04
51 23 0.33
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (51 bp):
TTCAACTTCACGACGAAGGGACCACTGGTTGTCAATAAACAATTTCCCAAT
Found at i:530132 original size:36 final size:36
Alignment explanation
Indices: 530085--530190 Score: 176
Period size: 36 Copynumber: 2.9 Consensus size: 36
530075 GTGCTCACCA
530085 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
*
530121 TTGTCTCTCTTGAGACAGTTTCCATTGAAACAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
* * *
530157 TCGTCTCCCTTGAGACAGTTTCTCTTGAAACAAA
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
530191 AGACCTTTGA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (36 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
Done.