Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002350.1 Hibiscus syriacus cultivar Beakdansim tig00004795_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75076

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1229--1284
28
2.0
28
89
6
87
44
14
14
26
1.83
2929--2992
27
2.4
27
91
0
101
25
6
42
26
1.78
3174--3236
26
2.4
27
89
2
92
28
39
6
25
1.80
7198--7239
3
14.3
3
95
5
77
66
0
0
33
0.92
8165--8197
14
2.4
14
94
0
57
30
30
6
33
1.82
9832--9874
18
2.4
18
84
0
59
25
18
23
32
1.97
11877--11919
2
21.5
2
100
0
86
48
0
0
51
1.00
14583--14607
13
1.9
13
100
0
50
16
40
24
20
1.91
20414--20711
147
2.0
147
99
0
587
36
15
21
25
1.93
23572--23628
24
2.3
25
80
17
66
15
5
7
71
1.25
26753--26813
3
19.3
3
86
9
86
1
34
0
63
1.04
26802--26879
34
2.4
33
91
4
122
14
43
0
42
1.45
29563--29645
3
26.3
3
88
9
121
66
0
33
0
0.92
29494--29573
34
2.4
34
93
0
133
41
2
43
12
1.56
31269--31332
3
22.0
3
78
12
62
28
4
1
65
1.21
34882--34921
17
2.4
16
84
8
53
27
10
35
27
1.89
39367--39426
31
1.9
31
83
16
79
33
15
11
40
1.83
39386--39512
32
4.0
31
68
14
80
29
17
12
40
1.86
39621--39695
36
2.1
36
82
9
91
25
17
12
45
1.82
39614--39731
63
1.9
62
86
8
168
27
16
11
43
1.84
39819--40151
40
7.9
40
72
15
210
23
33
19
23
1.97
39815--40108
46
6.8
45
74
12
226
24
31
20
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39948--40107
82
1.9
85
87
7
236
23
32
19
24
1.97
39808--40162
128
2.8
128
92
2
552
23
32
19
24
1.98
39869--40189
46
7.5
43
73
11
223
23
31
20
24
1.98
40356--40416
3
21.0
3
77
12
56
27
4
1
65
1.22
48170--48239
22
3.2
22
75
18
58
31
5
0
62
1.18
55655--55715
31
2.0
31
90
0
95
42
21
14
21
1.88
55777--55809
12
2.8
12
100
0
66
18
18
24
39
1.92
55763--55818
12
4.8
12
84
4
53
23
21
23
32
1.98
55791--55853
29
2.2
29
97
0
117
25
25
20
28
1.99
55832--55868
17
2.2
17
100
0
74
27
32
16
24
1.96
55801--55864
29
2.2
29
91
2
103
28
26
20
25
1.99
56235--56326
30
2.9
31
88
6
116
40
17
14
28
1.88
56256--56326
30
2.4
30
97
0
133
39
18
14
28
1.89
58431--58476
21
2.1
22
84
4
58
28
2
30
39
1.69
58437--58493
7
8.3
7
80
3
62
19
1
38
40
1.62
58336--58666
130
2.6
123
86
4
437
28
8
22
41
1.82
63133--63185
18
2.9
18
75
5
52
45
0
1
52
1.11
68079--68111
2
16.5
2
100
0
66
51
0
0
48
1.00
69418--69442
11
2.3
11
100
0
50
84
0
0
16
0.63

Tables:   1

The End!