Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002353.1 Hibiscus syriacus cultivar Beakdansim tig00004803_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124830

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2347--2382
2
18.0
2
100
0
72
50
0
0
50
1.00
3003--3031
2
14.5
2
100
0
58
51
0
0
48
1.00
4319--4343
9
2.8
9
100
0
50
44
24
8
24
1.80
4453--4492
20
2.0
20
85
9
55
45
0
5
50
1.23
15628--15671
3
15.0
3
95
4
81
34
0
0
65
0.93
16344--16386
16
2.7
16
88
0
68
41
11
6
39
1.68
16320--16366
22
2.1
22
96
0
85
46
8
6
38
1.60
16413--16508
11
8.2
11
69
15
50
40
8
3
47
1.49
16420--16554
24
5.7
24
78
11
118
45
9
1
43
1.45
16500--16570
14
4.7
14
68
21
54
53
11
0
35
1.37
16499--16589
21
4.0
22
78
21
100
52
9
0
37
1.35
16500--16574
15
4.9
15
74
19
75
53
10
0
36
1.36
16490--16589
47
2.2
46
98
1
191
52
11
0
37
1.37
17101--17234
66
2.0
66
89
2
207
35
23
6
33
1.81
16841--17494
326
2.0
326
99
0
1290
37
23
7
31
1.83
19269--19310
22
1.9
22
85
0
57
57
2
11
28
1.47
20632--20657
13
2.0
13
100
0
52
30
0
7
61
1.24
20857--20908
22
2.4
21
81
9
61
42
30
0
26
1.56
20881--20923
21
2.1
20
82
4
50
41
27
0
30
1.56
23763--23789
6
4.5
6
100
0
54
0
18
14
66
1.25
25337--25377
16
2.6
16
88
3
57
39
9
19
31
1.84
27726--27770
19
2.4
19
80
0
54
31
2
4
62
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27925--27977
27
2.0
27
81
7
63
47
1
1
49
1.23
33358--33382
2
12.5
2
100
0
50
48
0
0
52
1.00
43829--43883
24
2.3
24
96
0
101
38
14
18
29
1.90
44060--44155
38
2.5
38
89
3
149
11
12
38
37
1.79
44766--44818
18
3.0
17
78
8
52
32
24
7
35
1.84
46932--47004
27
2.7
27
95
2
128
30
8
12
49
1.69
46932--47014
27
3.1
26
86
10
80
31
8
12
48
1.70
48481--48524
18
2.4
18
85
7
54
25
6
0
68
1.14
51795--51852
30
1.9
30
100
0
116
44
8
12
34
1.72
63987--64017
2
15.5
2
93
0
53
51
0
0
48
1.00
64508--64565
28
2.1
28
87
6
84
32
5
0
62
1.18
68653--68697
17
2.7
17
93
3
74
73
0
13
13
1.10
73892--74468
113
4.9
113
83
9
689
39
15
18
26
1.90
74025--74472
124
3.7
123
83
9
595
40
15
18
25
1.90
74281--74344
20
3.2
20
65
12
60
43
9
21
25
1.82
76486--76523
18
2.1
18
90
9
60
44
0
0
55
0.99
76491--76536
23
2.0
23
87
4
67
41
0
0
58
0.98
76751--76789
2
20.5
2
84
10
55
51
0
0
48
1.00
76507--76810
148
2.1
145
84
11
397
38
4
6
49
1.50
88893--88965
22
3.5
22
67
17
75
47
8
5
38
1.56
96061--96129
23
3.0
23
89
0
102
26
26
27
20
1.99
97942--97986
21
2.1
21
87
0
63
15
24
28
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101882--101994
56
2.0
56
100
0
226
53
3
7
35
1.45
105135--105178
3
15.0
3
90
4
72
34
0
0
65
0.93
106618--106685
23
3.0
23
84
0
82
20
23
25
30
1.98
107129--107196
2
34.0
2
93
0
118
48
1
1
48
1.19
109778--109837
23
2.5
23
81
5
66
41
6
5
46
1.52
123319--123397
31
2.5
31
95
0
140
39
21
20
18
1.93
123955--124023
36
1.9
37
91
5
115
23
27
28
20
1.99

Tables:   1

The End!