Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002354.1 Hibiscus syriacus cultivar Beakdansim tig00004804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93816
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:9538 original size:133 final size:133
Alignment explanation
Indices: 9300--9569 Score: 522
Period size: 133 Copynumber: 2.0 Consensus size: 133
9290 ATACAACACA
*
9300 TACCATAGATTTATAGCATCACATGTAATGGGATTAACAGAGATTTAAGGGTAGGGATGAAGAAC
1 TACCATAGATTTATAGCATCACATGTAATGGGATTAACAGAGATTTAAGGGTAGCGATGAAGAAC
*
9365 TGTTTTTCTTTCTTATTCCATTATTTGAAAGATCTCTTACTAGACGTTTTATCTTTGATCTTGAG
66 TGTTTTTCTTTCTTATTCCATTATTTGAAAGATCTCTTACTAGACGTTTTATCTTTGATCTTAAG
9430 AAT
131 AAT
9433 TACCATAGATTTATAGCATCACATGTAATGGGATTAACAGAGATTTAAGGGTAGCGATGAAGAAC
1 TACCATAGATTTATAGCATCACATGTAATGGGATTAACAGAGATTTAAGGGTAGCGATGAAGAAC
9498 TGTTTTTCTTTCTTATTCCATTATTTGAAAGATCTCTTACTAGACGTTTTATCTTTGATCTTAAG
66 TGTTTTTCTTTCTTATTCCATTATTTGAAAGATCTCTTACTAGACGTTTTATCTTTGATCTTAAG
9563 AAT
131 AAT
9566 TACC
1 TACC
9570 CTTTTGTGTT
Statistics
Matches: 135, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 135 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (133 bp):
TACCATAGATTTATAGCATCACATGTAATGGGATTAACAGAGATTTAAGGGTAGCGATGAAGAAC
TGTTTTTCTTTCTTATTCCATTATTTGAAAGATCTCTTACTAGACGTTTTATCTTTGATCTTAAG
AAT
Found at i:13566 original size:37 final size:37
Alignment explanation
Indices: 13490--13566 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
13480 TTTTTATATT
*
13490 TTTAATTTTGTAAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
* * *
13527 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTAT-CAA
13564 TTT
1 TTT
13567 TTAATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 13 0.37
37 22 0.63
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (37 bp):
TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
Found at i:13743 original size:20 final size:20
Alignment explanation
Indices: 13718--13764 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
13708 TATTCTCTGA
13718 TAATCTTTTATTCCCACTGG
1 TAATCTTTTATTCCCACTGG
13738 TAATCTTTTATTCCCACTGG
1 TAATCTTTTATTCCCACTGG
13758 TAATCTT
1 TAATCTT
13765 ACATTCCGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.09, T:0.47
Consensus pattern (20 bp):
TAATCTTTTATTCCCACTGG
Found at i:13770 original size:20 final size:20
Alignment explanation
Indices: 13727--13771 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
13717 ATAATCTTTT
**
13727 ATTCCCACTGGTAATCTTTT
1 ATTCCCACTGGTAATCTTAC
13747 ATTCCCACTGGTAATCTTAC
1 ATTCCCACTGGTAATCTTAC
13767 ATTCC
1 ATTCC
13772 GTGAACCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.29, G:0.09, T:0.40
Consensus pattern (20 bp):
ATTCCCACTGGTAATCTTAC
Found at i:23876 original size:14 final size:13
Alignment explanation
Indices: 23842--23873 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
23832 TAATTTTTTG
23842 AAAA-ATTA-ATA
1 AAAATATTATATA
23853 AAAATATTATATA
1 AAAATATTATATA
23866 AAAATATT
1 AAAATATT
23874 TATTTTGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 4 0.21
12 4 0.21
13 11 0.58
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
AAAATATTATATA
Found at i:27464 original size:7 final size:7
Alignment explanation
Indices: 27452--27498 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
27442 AAAATAGCAC
27452 CGGTCAA
1 CGGTCAA
27459 CGGTCAA
1 CGGTCAA
27466 CGGTCAA
1 CGGTCAA
27473 CGGTCAA
1 CGGTCAA
27480 CGGTCAA
1 CGGTCAA
27487 CGGTCAA
1 CGGTCAA
27494 CGGTC
1 CGGTC
27499 GGGTCGGGTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.15
Consensus pattern (7 bp):
CGGTCAA
Found at i:27510 original size:17 final size:15
Alignment explanation
Indices: 27497--27568 Score: 71
Period size: 17 Copynumber: 4.8 Consensus size: 15
27487 CGGTCAACGG
27497 TCGGGTCGGGTCAA-
1 TCGGGTCGGGTCAAC
*
27511 -CGGGTCGGGTTAA-
1 TCGGGTCGGGTCAAC
27524 -CGGGTCGGGTCAAC
1 TCGGGTCGGGTCAAC
27538 GGTCGGGTCGGGTCAAC
1 --TCGGGTCGGGTCAAC
27555 TATCGGGTCGGGTC
1 --TCGGGTCGGGTC
27569 GTGACCGGTC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
13 24 0.48
17 26 0.52
ACGTcount: A:0.12, C:0.22, G:0.44, T:0.21
Consensus pattern (15 bp):
TCGGGTCGGGTCAAC
Found at i:27516 original size:13 final size:13
Alignment explanation
Indices: 27498--27546 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
27488 GGTCAACGGT
27498 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
*
27511 CGGGTCGGGTTAA
1 CGGGTCGGGTCAA
27524 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
27537 C-GGTCGGGTC
1 CGGGTCGGGTC
27547 GGGTCAACTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
12 9 0.26
13 25 0.74
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (13 bp):
CGGGTCGGGTCAA
Found at i:34728 original size:7 final size:7
Alignment explanation
Indices: 34716--34762 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
34706 AAAATAGCAC
34716 CGGTCAA
1 CGGTCAA
34723 CGGTCAA
1 CGGTCAA
34730 CGGTCAA
1 CGGTCAA
34737 CGGTCAA
1 CGGTCAA
34744 CGGTCAA
1 CGGTCAA
34751 CGGTCAA
1 CGGTCAA
34758 CGGTC
1 CGGTC
34763 GGGTCGGGTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.15
Consensus pattern (7 bp):
CGGTCAA
Found at i:34774 original size:17 final size:15
Alignment explanation
Indices: 34761--34832 Score: 71
Period size: 17 Copynumber: 4.8 Consensus size: 15
34751 CGGTCAACGG
34761 TCGGGTCGGGTCAA-
1 TCGGGTCGGGTCAAC
*
34775 -CGGGTCGGGTTAA-
1 TCGGGTCGGGTCAAC
34788 -CGGGTCGGGTCAAC
1 TCGGGTCGGGTCAAC
34802 GGTCGGGTCGGGTCAAC
1 --TCGGGTCGGGTCAAC
34819 TATCGGGTCGGGTC
1 --TCGGGTCGGGTC
34833 GTGACCGGTC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
13 24 0.48
17 26 0.52
ACGTcount: A:0.12, C:0.22, G:0.44, T:0.21
Consensus pattern (15 bp):
TCGGGTCGGGTCAAC
Found at i:34780 original size:13 final size:13
Alignment explanation
Indices: 34762--34810 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
34752 GGTCAACGGT
34762 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
*
34775 CGGGTCGGGTTAA
1 CGGGTCGGGTCAA
34788 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
34801 C-GGTCGGGTC
1 CGGGTCGGGTC
34811 GGGTCAACTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
12 9 0.26
13 25 0.74
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (13 bp):
CGGGTCGGGTCAA
Found at i:36419 original size:17 final size:17
Alignment explanation
Indices: 36374--36420 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
36364 TTTTTCGGTT
36374 CGGTTCA-TTTTTTTAA
1 CGGTTCAGTTTTTTTAA
*
36390 CGGTTCGGTTTTTTTAA
1 CGGTTCAGTTTTTTTAA
36407 CGGTTCAAGTTTTT
1 CGGTTC-AGTTTTT
36421 CGGTTCAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 6 0.22
17 15 0.56
18 6 0.22
ACGTcount: A:0.15, C:0.13, G:0.19, T:0.53
Consensus pattern (17 bp):
CGGTTCAGTTTTTTTAA
Found at i:36924 original size:12 final size:11
Alignment explanation
Indices: 36884--36924 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
36874 GTAAAGTGTC
36884 AAATAATAACA
1 AAATAATAACA
36895 AAATAAGTAA-A
1 AAATAA-TAACA
36906 AAA-AATAACA
1 AAATAATAACA
36916 AAATCAATA
1 AAAT-AATA
36925 GCGCTTAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
9 3 0.12
10 6 0.23
11 10 0.38
12 7 0.27
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.17
Consensus pattern (11 bp):
AAATAATAACA
Found at i:41385 original size:22 final size:22
Alignment explanation
Indices: 41360--41432 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
41350 TTATAATGTT
41360 AAAATATATTATTTAATTATTA
1 AAAATATATTATTTAATTATTA
*
41382 AAAATATATTA---AAATATTA
1 AAAATATATTATTTAATTATTA
* * *
41401 TGAAATATATTATTTTAATAATTT
1 -AAAATATATTA-TTTAATTATTA
41425 AAAATATA
1 AAAATATA
41433 ACAAATGATT
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
19 7 0.17
20 10 0.25
22 11 0.28
23 7 0.17
24 5 0.12
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (22 bp):
AAAATATATTATTTAATTATTA
Found at i:41431 original size:43 final size:42
Alignment explanation
Indices: 41354--41461 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 42
41344 TTTATTTTAT
*
41354 AATG-TTA-AAATATATTA-TTTAATTATTAAAAATATATTA-A
1 AATGATTATAAATATATTATTTTAATAATTAAAAATATA--ACA
*
41394 AAT-ATTATGAAATATATTATTTTAATAATTTAAAATATAACA
1 AATGATTAT-AAATATATTATTTTAATAATTAAAAATATAACA
41436 AATGATTATAAATATATTATTATTAA
1 AATGATTATAAATATATTATT-TTAA
41462 AATATTTATT
Statistics
Matches: 59, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
40 6 0.10
41 1 0.02
42 26 0.44
43 26 0.44
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (42 bp):
AATGATTATAAATATATTATTTTAATAATTAAAAATATAACA
Found at i:41470 original size:15 final size:17
Alignment explanation
Indices: 41440--41476 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
41430 ATAACAAATG
41440 ATTATAAATATATTATT
1 ATTATAAATATATTATT
41457 ATTA-AAATAT-TTATT
1 ATTATAAATATATTATT
41472 ATTAT
1 ATTAT
41477 TTAAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 6 0.32
17 4 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTATAAATATATTATT
Found at i:41473 original size:18 final size:19
Alignment explanation
Indices: 41450--41486 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
41440 ATTATAAATA
41450 TATTATTA-TTAAAATATT
1 TATTATTATTTAAAATATT
41468 TATTATTATTTAAAATATT
1 TATTATTATTTAAAATATT
41487 GATATATTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTATTATTTAAAATATT
Found at i:41486 original size:15 final size:16
Alignment explanation
Indices: 41444--41486 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
41434 CAAATGATTA
41444 TAAATATATTATTATT
1 TAAATATATTATTATT
*
41460 AAAATATTTATTATTATT
1 TAAATA--TATTATTATT
41478 TAAA-ATATT
1 TAAATATATT
41487 GATATATTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
15 4 0.17
16 5 0.22
17 1 0.04
18 13 0.57
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TAAATATATTATTATT
Found at i:48517 original size:31 final size:31
Alignment explanation
Indices: 48482--48715 Score: 423
Period size: 31 Copynumber: 7.5 Consensus size: 31
48472 CATAGATTCA
* * *
48482 GAAGAACCTAGGTAATCAATCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
48513 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
48544 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
48575 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
*
48606 GAAGAACATAGGTAAACAGTCAATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
48637 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
*
48668 GAAGAACATAGGTAAATAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
48699 GAAGAACATAGGTAAAC
1 GAAGAACATAGGTAAAC
48716 CCTCGACTCT
Statistics
Matches: 196, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 196 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (31 bp):
GAAGAACATAGGTAAACAGTCCATATGTCCC
Found at i:49662 original size:20 final size:21
Alignment explanation
Indices: 49622--49676 Score: 85
Period size: 20 Copynumber: 2.7 Consensus size: 21
49612 TTCGCTTGAG
*
49622 GGGTATCGATTCCCATTGAAT
1 GGGTACCGATTCCCATTGAAT
*
49643 GGGTACCGATTTCC-TTGAAT
1 GGGTACCGATTCCCATTGAAT
49663 GGGTACCGATTCCC
1 GGGTACCGATTCCC
49677 CTTGCCCAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.20, C:0.24, G:0.25, T:0.31
Consensus pattern (21 bp):
GGGTACCGATTCCCATTGAAT
Found at i:50894 original size:21 final size:21
Alignment explanation
Indices: 50870--50910 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
50860 ATATACACTA
50870 TGCTACAGTGTACCGATGCAC
1 TGCTACAGTGTACCGATGCAC
*
50891 TGCTACAGTGTACTGATGCA
1 TGCTACAGTGTACCGATGCA
50911 TAAAAACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (21 bp):
TGCTACAGTGTACCGATGCAC
Found at i:50962 original size:21 final size:21
Alignment explanation
Indices: 50933--50973 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50923 ATATAAGTTG
* *
50933 TGTATCGATGCACTGCTACAA
1 TGTACCGATGCACTACTACAA
50954 TGTACCGATGCACTACTACA
1 TGTACCGATGCACTACTACA
50974 GTAACTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (21 bp):
TGTACCGATGCACTACTACAA
Found at i:51268 original size:2 final size:2
Alignment explanation
Indices: 51261--51310 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
51251 TGCATGCATG
51261 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51303 TA TA TA TA
1 TA TA TA TA
51311 CAATCATTAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51687 original size:37 final size:37
Alignment explanation
Indices: 51646--51743 Score: 160
Period size: 37 Copynumber: 2.6 Consensus size: 37
51636 TAATCAGTCT
51646 ATATGTCCCGAAGAACATAGGTAATCTATAACTCTCC
1 ATATGTCCCGAAGAACATAGGTAATCTATAACTCTCC
* * * *
51683 ATATGTCCCGAAGAATATAAGTAATCTGTAACTGTCC
1 ATATGTCCCGAAGAACATAGGTAATCTATAACTCTCC
51720 ATATGTCCCGAAGAACATAGGTAA
1 ATATGTCCCGAAGAACATAGGTAA
51744 CCCTCGACTC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (37 bp):
ATATGTCCCGAAGAACATAGGTAATCTATAACTCTCC
Found at i:52053 original size:2 final size:2
Alignment explanation
Indices: 52046--52090 Score: 81
Period size: 2 Copynumber: 22.0 Consensus size: 2
52036 TCACATAAAC
52046 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT
52089 AT
1 AT
52091 CTTTTTCACA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 40 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:54413 original size:35 final size:35
Alignment explanation
Indices: 54374--54442 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
54364 AAGTCTCTGC
*
54374 AGGTTCAG-CTCGATCAAATTGGTAATTCCTTATAT
1 AGGTTCAGAC-CGATCAAACTGGTAATTCCTTATAT
* *
54409 AGGTTCAGACCGATCGAGCTGGTAATTCCTTATA
1 AGGTTCAGACCGATCAAACTGGTAATTCCTTATA
54443 GACCTAAGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 29 0.97
36 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (35 bp):
AGGTTCAGACCGATCAAACTGGTAATTCCTTATAT
Found at i:75004 original size:2 final size:2
Alignment explanation
Indices: 74997--75066 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
74987 CTCAAATCTC
74997 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75039 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75067 GTGTGTGTGT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79087 original size:27 final size:26
Alignment explanation
Indices: 79030--79089 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
79020 AGTTTGCCAT
*
79030 ATTTATGGTCTTTTTTCTTTTCTTTTC
1 ATTT-TGGTCTTTTTTCTTTTCTTTCC
79057 -TTTTGGTCTTTTTT-TTCATTCTTTCC
1 ATTTTGGTCTTTTTTCTT--TTCTTTCC
79083 ATTTTGG
1 ATTTTGG
79090 CCCCTTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
24 2 0.07
25 11 0.38
26 10 0.34
27 6 0.21
ACGTcount: A:0.07, C:0.15, G:0.10, T:0.68
Consensus pattern (26 bp):
ATTTTGGTCTTTTTTCTTTTCTTTCC
Found at i:81377 original size:7 final size:7
Alignment explanation
Indices: 81365--81389 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
81355 AAAGGTTTGC
81365 AAGAGAG
1 AAGAGAG
81372 AAGAGAG
1 AAGAGAG
81379 AAGAGAG
1 AAGAGAG
81386 AAGA
1 AAGA
81390 TACGTGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (7 bp):
AAGAGAG
Found at i:82371 original size:20 final size:21
Alignment explanation
Indices: 82346--82397 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
82336 TTTTCCCAAT
82346 TCGCAATGCGAATAAGT-AAA
1 TCGCAATGCGAATAAGTAAAA
* **
82366 TCGCAACGCGAATTGGTAAAA
1 TCGCAATGCGAATAAGTAAAA
82387 TCGCAATGCGA
1 TCGCAATGCGA
82398 TACTGACTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (21 bp):
TCGCAATGCGAATAAGTAAAA
Found at i:82410 original size:41 final size:41
Alignment explanation
Indices: 82383--82520 Score: 163
Period size: 41 Copynumber: 3.4 Consensus size: 41
82373 GCGAATTGGT
*
82383 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* *
82424 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATACTGAC
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATAAT-AC
** * * *
82466 --TTTCGCAACGCGATTCTGACTTTCGCAACGAGATAATAC
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* *
82505 AGAATCGCAATGCGAT
1 AAAATCGCAACGCGAT
82521 TTTTAAAGTT
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.02
40 32 0.39
41 47 0.57
42 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:82411 original size:20 final size:20
Alignment explanation
Indices: 82386--82500 Score: 133
Period size: 20 Copynumber: 5.7 Consensus size: 20
82376 AATTGGTAAA
*
82386 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
82406 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
82427 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
82447 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
82467 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* *
82487 TTCGCAACGAGATA
1 ATCGCAACGCGATA
82501 ATACAGAATC
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.77
21 15 0.18
22 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:83479 original size:12 final size:12
Alignment explanation
Indices: 83462--83486 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83452 ATATAATCCT
83462 GAAGAAGAAAAA
1 GAAGAAGAAAAA
83474 GAAGAAGAAAAA
1 GAAGAAGAAAAA
83486 G
1 G
83487 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:85803 original size:19 final size:19
Alignment explanation
Indices: 85781--85869 Score: 81
Period size: 19 Copynumber: 5.2 Consensus size: 19
85771 AATTACTATT
85781 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
*
85800 GCAA--CG--A-GAGAATC
1 GCAATGCGAAATGAAAATC
85814 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
* *
85833 GCAACGCG-AAT----TTC
1 GCAATGCGAAATGAAAATC
85847 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
85866 GCAA
1 GCAA
85870 CGAGGGAATC
Statistics
Matches: 54, Mismatches: 6, Indels: 20
0.68 0.08 0.25
Matches are distributed among these distances:
14 19 0.35
15 4 0.07
16 2 0.04
17 2 0.04
18 4 0.07
19 23 0.43
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (19 bp):
GCAATGCGAAATGAAAATC
Found at i:85823 original size:33 final size:33
Alignment explanation
Indices: 85781--85904 Score: 187
Period size: 33 Copynumber: 3.8 Consensus size: 33
85771 AATTACTATT
85781 GCAATGCGAAATGAAAATCGCAACGAGAGAATC
1 GCAATGCGAAATGAAAATCGCAACGAGAGAATC
* *
85814 GCAATGCGAAATGAAAATCGCAACGCGA-ATTTC
1 GCAATGCGAAATGAAAATCGCAACGAGAGA-ATC
*
85847 GCAATGCGAAATGAAAATCGCAACGAGGGAATC
1 GCAATGCGAAATGAAAATCGCAACGAGAGAATC
* *
85880 GCAACGCGAAATGAAAATCACAACG
1 GCAATGCGAAATGAAAATCGCAACG
85905 CGAATTTAAT
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
32 1 0.01
33 80 0.98
34 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.13
Consensus pattern (33 bp):
GCAATGCGAAATGAAAATCGCAACGAGAGAATC
Found at i:85889 original size:66 final size:66
Alignment explanation
Indices: 85781--85911 Score: 235
Period size: 66 Copynumber: 2.0 Consensus size: 66
85771 AATTACTATT
* *
85781 GCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAATTT
1 GCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCACAACGCGAATTT
85846 C
66 C
*
85847 GCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAACGCGAAATGAAAATCACAACGCGAATTT
1 GCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCACAACGCGAATTT
85912 AATTTCGCGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (66 bp):
GCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCACAACGCGAATTT
C
Found at i:85926 original size:19 final size:19
Alignment explanation
Indices: 85904--85945 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
85894 AAATCACAAC
85904 GCGAATTTAATTTCGCGTT
1 GCGAATTTAATTTCGCGTT
* *
85923 GCGATTTTCATTTCGCGTT
1 GCGAATTTAATTTCGCGTT
85942 GCGA
1 GCGA
85946 TTCCCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.40
Consensus pattern (19 bp):
GCGAATTTAATTTCGCGTT
Found at i:85946 original size:19 final size:19
Alignment explanation
Indices: 85913--85979 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 19
85903 CGCGAATTTA
85913 ATTTCGCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTTTC
85932 ATTTCGCGTTGCGA--TTC
1 ATTTCGCGTTGCGATTTTC
* *
85949 ---CCTCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTTTC
*
85965 ATTTCGCATTGCGAT
1 ATTTCGCGTTGCGAT
85980 AGTACTTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
14 9 0.24
16 3 0.08
17 3 0.08
19 23 0.61
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (19 bp):
ATTTCGCGTTGCGATTTTC
Found at i:86100 original size:15 final size:14
Alignment explanation
Indices: 86080--86114 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
86070 CATCAATTAA
86080 ACAAATAAACTTTTT
1 ACAAAT-AACTTTTT
*
86095 ACAAATCACTTTTT
1 ACAAATAACTTTTT
86109 ACAAAT
1 ACAAAT
86115 CAATTAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (14 bp):
ACAAATAACTTTTT
Found at i:86107 original size:14 final size:14
Alignment explanation
Indices: 86088--86116 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86078 AAACAAATAA
86088 ACTTTTTACAAATC
1 ACTTTTTACAAATC
86102 ACTTTTTACAAATC
1 ACTTTTTACAAATC
86116 A
1 A
86117 ATTAAACAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (14 bp):
ACTTTTTACAAATC
Found at i:87535 original size:21 final size:21
Alignment explanation
Indices: 87469--87535 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
87459 GTGAATCGGG
*
87469 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
87489 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
87511 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
87532 CTCT
1 CTCT
87536 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:87987 original size:91 final size:90
Alignment explanation
Indices: 87809--87993 Score: 273
Period size: 91 Copynumber: 2.0 Consensus size: 90
87799 ATTTCAAACT
* *
87809 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGC
1 TTCAACCAAAAGAAAAAACAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTAGC
* *
87874 AGAATTGGCAGGAGCCGAATAAATTTAC
63 AGAATTGGCAGCAACCGAATAAATTTAC
87902 TTCAACCAAAAGAAAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAGCA
1 TTCAACCAAAAGAAAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCA
*
87966 GTATTGGCAGCAACCGAATAAATTTAC
64 GAATTGGCAGCAACCGAATAAATTTAC
87993 T
1 T
87994 AAGCAATCTA
Statistics
Matches: 85, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
91 40 0.47
93 18 0.21
95 27 0.32
ACGTcount: A:0.47, C:0.18, G:0.14, T:0.22
Consensus pattern (90 bp):
TTCAACCAAAAGAAAAAACAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGA
ATTGGCAGCAACCGAATAAATTTAC
Found at i:89711 original size:20 final size:19
Alignment explanation
Indices: 89680--89820 Score: 86
Period size: 19 Copynumber: 7.8 Consensus size: 19
89670 TCTTTTGGTT
89680 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
89699 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
89720 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
89739 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
** *
89753 GAAATGACTATCGCGACGA
1 GAAATGAAAATCGCAACGA
* *
89772 G--A-G--AATCGCAATGC
1 GAAATGAAAATCGCAACGA
* *
89786 GAAATGAAAATTGCAACGC
1 GAAATGAAAATCGCAACGA
89805 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
89821 TGCGATTTTG
Statistics
Matches: 93, Mismatches: 17, Indels: 24
0.69 0.13 0.18
Matches are distributed among these distances:
14 18 0.19
16 4 0.04
17 4 0.04
19 36 0.39
20 29 0.31
21 2 0.02
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:89762 original size:33 final size:33
Alignment explanation
Indices: 89705--89792 Score: 149
Period size: 33 Copynumber: 2.6 Consensus size: 33
89695 ACGAGATAAT
89705 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACGA
*
89739 GAGAATCGCAACGCGAAATGACTATCGCGACGA
1 GAGAATCGCAACGCGAAATGACTATCGCAACGA
*
89772 GAGAATCGCAATGCGAAATGA
1 GAGAATCGCAACGCGAAATGA
89793 AAATTGCAAC
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
33 38 0.73
34 14 0.27
ACGTcount: A:0.39, C:0.22, G:0.27, T:0.12
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACGA
Found at i:89843 original size:19 final size:19
Alignment explanation
Indices: 89821--89865 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
89811 AAAATCGCAA
* *
89821 TGCGATTTTGGTTTCGTGT
1 TGCGATTTTGATTTCGCGT
*
89840 TGCGATTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
89859 TGCGATT
1 TGCGATT
89866 CTCTCGTTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.09, C:0.13, G:0.27, T:0.51
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:90435 original size:20 final size:20
Alignment explanation
Indices: 90410--90462 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
90400 ACGCTATGTA
90410 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
90430 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
90450 TATCTCGTTGCGA
1 AATCGCGTTGCGA
90463 TTTTGTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:90496 original size:20 final size:20
Alignment explanation
Indices: 90471--90524 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
90461 GATTTTGTAT
90471 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
90491 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
90511 TATCGCATTGCGAT
1 TATCGCATTGCGAT
90525 TTTCCCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:90509 original size:61 final size:61
Alignment explanation
Indices: 90411--90527 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
90401 CGCTATGTAA
* * * * *
90411 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
* * *
90472 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT
90528 CCCAATTCGC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
Found at i:90543 original size:61 final size:61
Alignment explanation
Indices: 90411--90545 Score: 155
Period size: 61 Copynumber: 2.2 Consensus size: 61
90401 CGCTATGTAA
* * * * * ** *
90411 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
* * *
90472 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAAT
90534 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
90546 TTACTTATTC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 59 0.97
62 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:90635 original size:21 final size:21
Alignment explanation
Indices: 90595--90635 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
90585 ACTGTAGACC
** *
90595 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGCAACT
90616 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATGCAAC
90636 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAAATGCAACT
Found at i:93048 original size:31 final size:31
Alignment explanation
Indices: 93013--93071 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
93003 ATTTAGAAGT
*
93013 TAATTTGATTAAATCTATCAAATTTAAGAAA
1 TAATTTGATCAAATCTATCAAATTTAAGAAA
* * *
93044 TAATTTTATCAAATTTATCAAGTTTAAG
1 TAATTTGATCAAATCTATCAAATTTAAG
93072 CGTGATTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (31 bp):
TAATTTGATCAAATCTATCAAATTTAAGAAA
Found at i:93288 original size:18 final size:19
Alignment explanation
Indices: 93265--93307 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
93255 TAAATTAATA
93265 AAATTATAAAT-TTTCAAT
1 AAATTATAAATATTTCAAT
93283 AAATTA-AAATATTTCAAT
1 AAATTATAAATATTTCAAT
*
93301 GAATTAT
1 AAATTAT
93308 TAAACATGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (19 bp):
AAATTATAAATATTTCAAT
Done.