genome.fa.s2355.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002355.1 Hibiscus syriacus cultivar Beakdansim tig00004807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56575

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8--829	170	4.8	169	76	14	694	43	13	14	27	1.83
158--822	337	2.0	337	85	8	915	43	12	14	28	1.82
1248--1313	19	3.6	19	80	13	75	46	0	15	37	1.46
2536--2589	23	2.4	22	78	9	63	38	1	7	51	1.41
2629--2667	18	2.2	18	100	0	78	17	10	28	43	1.82
2838--2875	18	2.1	18	90	0	58	39	5	50	5	1.48
4751--4799	18	2.7	18	80	3	62	26	2	10	61	1.39
5171--6654	199	7.5	199	87	2	2113	41	15	14	28	1.87
5171--6648	595	2.5	588	88	3	2137	41	15	14	28	1.87
6998--7026	15	1.9	15	100	0	58	20	44	6	27	1.77
7363--7390	2	14.0	2	100	0	56	50	0	0	50	1.00
9892--9945	21	2.6	21	96	0	99	37	12	16	33	1.87
9934--10497	179	3.1	178	86	8	717	42	15	14	28	1.86
10109--11022	197	4.6	196	85	4	978	40	15	13	30	1.85
10291--11248	199	4.8	199	82	5	717	39	15	13	31	1.87
10485--11244	199	3.8	201	82	4	734	38	15	13	31	1.87
11214--11254	21	2.0	21	90	0	64	26	14	14	43	1.84
15353--15410	23	2.5	23	91	0	89	32	15	8	43	1.77
15276--15437	87	1.9	87	90	0	261	33	12	11	42	1.79
21201--21231	14	2.2	14	94	0	53	38	3	38	19	1.68
21769--21818	23	2.2	23	85	0	64	38	8	20	34	1.82
21847--21894	23	2.1	23	84	7	62	37	10	18	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21732--21894	87	1.9	87	93	0	281	41	12	14	31	1.84
21889--22412	200	2.6	196	79	8	576	30	15	14	38	1.88
25792--26151	177	2.0	176	96	0	657	30	11	15	42	1.83
25968--26682	198	3.6	199	82	6	863	30	13	15	40	1.86
28119--28176	6	9.7	6	90	0	62	18	32	1	46	1.60
29308--29360	15	3.5	15	84	0	61	32	5	43	18	1.74
29853--30982	198	5.8	187	88	6	1543	31	14	15	37	1.88
30041--30982	198	4.8	198	92	1	1595	31	14	15	37	1.88
29833--30982	396	2.9	391	91	4	1819	31	15	15	37	1.89
31315--31364	19	2.6	19	93	0	82	58	10	2	30	1.42
34618--34653	17	2.1	17	100	0	72	30	11	8	50	1.67
35617--35672	24	2.4	23	80	8	69	51	7	0	41	1.29
36446--36507	25	2.5	26	92	7	110	25	25	11	37	1.89
37763--37810	20	2.4	20	82	6	53	18	20	10	50	1.76
37550--38200	184	3.6	180	84	5	824	27	17	12	42	1.85
41017--41095	31	2.6	30	82	6	86	31	21	11	35	1.89
44309--44483	60	2.9	60	78	9	178	31	18	5	45	1.71
44614--44780	60	2.8	60	80	5	176	41	7	19	32	1.78
46752--46998	123	2.0	123	97	1	469	21	25	14	37	1.92
47017--47074	24	2.4	24	81	13	66	12	10	5	72	1.26
52479--52511	16	2.1	16	100	0	66	45	0	24	30	1.53

Tables:   1

The End!