genome.fa.s2357.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002357.1 Hibiscus syriacus cultivar Beakdansim tig00004811_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161968

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100--1138	20	2.0	20	84	0	51	30	10	0	58	1.31
3034--3073	20	2.0	21	95	5	73	30	15	22	32	1.94
3703--3768	34	1.9	34	93	0	114	51	16	1	30	1.54
12241--12301	31	2.0	31	96	0	113	39	6	13	40	1.70
12243--12309	31	2.2	31	91	0	107	37	5	13	43	1.69
13665--13693	13	2.3	13	94	5	51	65	0	0	34	0.93
22090--24689	653	4.0	652	94	1	4483	32	15	22	29	1.95
25692--26161	182	2.6	182	88	1	699	41	14	16	27	1.87
26082--26127	20	2.3	19	78	10	56	56	10	13	19	1.66
28423--28488	33	2.0	33	93	0	114	30	0	46	22	1.52
30570--31092	201	2.6	202	95	0	931	37	13	16	31	1.88
34126--34676	200	2.7	199	86	3	755	38	13	16	31	1.87
37415--38097	201	3.4	198	84	7	819	40	14	15	30	1.87
38120--38282	89	1.9	87	89	2	254	32	13	11	42	1.79
38199--38256	23	2.5	23	85	0	80	32	15	6	44	1.73
39175--39218	7	6.3	7	100	0	88	0	29	0	70	0.88
43789--43846	5	11.8	5	92	3	100	41	17	0	41	1.49
44840--44897	20	2.7	20	84	10	71	27	22	18	31	1.97
46974--47161	100	1.9	98	91	6	308	27	12	24	35	1.92
47175--47237	23	2.7	23	80	5	63	20	26	28	23	1.99
47200--47245	24	2.0	23	82	4	56	19	19	28	32	1.96
50896--50939	21	2.2	20	87	4	61	31	27	25	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63204--63270	31	2.2	31	94	2	118	34	5	13	46	1.68
68841--68980	45	3.1	45	82	2	138	36	7	20	35	1.80
69963--70003	18	2.3	18	95	0	73	48	7	4	39	1.52
77189--77245	12	4.9	11	75	10	51	40	8	10	40	1.71
77200--77244	12	3.8	12	78	0	54	42	6	8	42	1.62
77188--77245	24	2.5	23	88	2	80	39	8	10	41	1.70
77225--77480	36	6.9	36	81	7	282	42	10	3	42	1.57
77225--77480	74	3.5	73	81	7	284	42	10	3	42	1.57
77229--77488	110	2.4	108	85	7	353	43	10	3	42	1.57
77503--77532	2	15.0	2	100	0	60	50	0	0	50	1.00
78109--78592	83	5.8	85	84	4	642	26	19	21	33	1.96
79923--79962	14	2.9	14	81	3	55	35	0	0	65	0.93
85911--86142	36	6.4	36	81	10	242	42	7	4	45	1.52
85907--86143	110	2.2	109	84	6	311	43	7	4	45	1.52
85907--86177	110	2.5	108	81	11	268	42	7	4	46	1.52
91252--91291	20	2.0	20	85	0	53	80	2	5	12	0.98
92508--92548	3	13.3	3	94	5	73	68	0	0	31	0.90
92507--92564	25	2.2	28	90	9	95	65	1	0	32	1.03
92612--92869	71	3.7	70	87	9	334	44	8	5	41	1.57
92767--92791	11	2.3	11	100	0	50	44	8	8	40	1.63
92804--92828	12	2.1	12	100	0	50	40	8	8	44	1.63
92629--92869	34	6.9	35	74	19	204	43	7	5	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92944--92990	18	2.6	18	83	6	60	38	0	12	48	1.41
93500--94317	166	5.0	166	94	1	1362	22	21	26	29	1.99
97530--97575	19	2.4	19	92	0	74	67	6	13	13	1.41
99274--99313	20	2.0	20	85	0	53	80	2	5	12	0.98
100530--100572	3	14.3	3	100	0	86	67	0	0	32	0.91
100634--100887	71	3.6	71	90	6	358	44	8	5	41	1.57
100792--100816	11	2.3	11	100	0	50	44	8	8	40	1.63
100829--100853	12	2.1	12	100	0	50	40	8	8	44	1.63
100679--100918	108	2.2	107	82	9	285	43	6	5	44	1.53
100987--101033	22	2.1	22	88	0	67	48	2	8	40	1.45
101487--101544	23	2.5	23	85	0	71	46	1	12	39	1.51
101864--101918	20	2.8	20	97	0	101	14	18	20	47	1.83
101884--102502	182	3.4	181	84	4	793	27	16	13	43	1.84
103038--103085	21	2.2	22	92	3	80	16	6	8	68	1.35
103534--103577	22	2.0	22	100	0	88	40	18	9	31	1.81
105623--105715	22	4.3	22	81	1	98	33	26	13	25	1.94
105985--106027	14	2.7	17	79	20	65	55	11	6	25	1.60
112148--112198	23	2.3	22	84	15	70	25	27	25	21	1.99
115229--115292	23	2.8	23	85	0	83	29	26	25	18	1.98
115891--115930	19	2.0	20	85	4	55	15	30	30	25	1.95
115953--115995	21	2.0	21	81	0	50	16	25	30	27	1.97
119125--119162	20	1.9	20	88	0	58	10	31	34	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121224--121288	22	3.1	21	72	17	64	49	18	0	32	1.48
121317--121378	24	2.6	24	89	5	90	54	3	3	38	1.32
122865--122917	3	17.7	3	79	14	56	37	0	0	62	0.96
122862--122915	28	2.0	27	86	10	76	38	0	0	61	0.96
122868--122915	10	4.9	10	82	12	64	37	0	0	62	0.95
125915--125980	13	5.3	13	76	20	54	16	46	21	15	1.83
125911--125974	18	3.6	18	93	0	110	17	50	20	12	1.78
128500--128587	24	3.7	24	82	0	104	20	12	18	48	1.80
128523--128592	12	5.8	12	76	6	70	15	14	18	51	1.77
128486--128594	48	2.3	49	85	3	141	19	14	17	48	1.81
129372--129750	185	2.1	184	91	4	629	45	8	3	41	1.54
131248--131307	27	2.2	27	96	0	111	55	10	11	23	1.66
132680--132713	17	2.0	17	94	0	59	38	32	11	17	1.86
134633--134688	19	2.9	19	85	12	78	16	21	28	33	1.95
134633--134681	10	4.8	11	83	16	70	16	20	26	36	1.93
134634--134688	9	5.6	10	83	12	78	14	21	29	34	1.93
134705--134752	18	2.7	18	100	0	96	16	47	22	12	1.80
134753--134828	29	2.6	29	80	0	80	22	6	25	46	1.76
154429--154453	5	5.0	5	100	0	50	60	0	0	40	0.97

Tables:   1

The End!