genome.fa.s2359.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002359.1 Hibiscus syriacus cultivar Beakdansim tig00004814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83060

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1558--1606	19	2.6	19	96	0	89	32	2	10	55	1.45
1836--3204	200	6.9	200	93	2	2254	36	14	17	31	1.90
6045--6542	184	2.7	184	94	0	881	36	13	16	33	1.88
9523--9595	23	3.2	23	98	0	137	34	8	21	35	1.84
10451--10611	85	1.9	87	93	2	281	32	14	11	40	1.82
38311--38445	59	2.3	58	80	8	146	35	14	15	34	1.89
40899--40968	35	2.0	35	83	2	88	55	12	7	24	1.62
41871--42358	229	2.1	229	96	0	888	44	8	7	39	1.63
42635--42681	20	2.4	19	89	10	76	55	10	17	17	1.69
42424--42844	181	2.3	182	87	2	596	42	14	16	26	1.86
45067--45131	21	3.1	21	79	0	76	38	13	30	16	1.88
45165--45230	33	2.0	33	87	0	96	28	1	46	22	1.61
47011--47058	19	2.6	19	93	3	80	31	2	10	56	1.45
47177--47945	199	3.9	199	97	0	1432	37	15	15	31	1.90
47177--47945	397	1.9	398	97	0	1441	37	15	15	31	1.90
48345--48409	25	2.6	25	80	0	85	35	9	13	41	1.77
48754--48826	23	3.2	23	88	0	101	34	4	21	39	1.73
49231--49285	24	2.3	25	81	9	69	32	5	14	47	1.67
49250--49286	18	2.1	18	89	0	56	32	5	10	51	1.60
49544--49630	39	2.2	39	91	0	147	48	19	13	18	1.81
50047--50119	23	3.2	23	84	0	92	34	4	20	41	1.72
50122--50160	20	2.0	20	89	0	60	25	15	10	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50475--50547	23	3.2	23	88	0	101	34	4	21	39	1.73
50693--50759	30	2.2	29	82	10	73	52	4	0	43	1.21
49860--51319	430	3.4	430	96	1	2645	41	7	12	39	1.71
50905--50977	23	3.2	23	86	0	92	35	4	20	39	1.72
52001--52060	2	30.5	2	96	3	113	48	0	0	51	1.00
52695--52758	32	2.0	32	93	0	110	10	17	20	51	1.75
56224--56287	32	2.0	32	96	0	119	10	15	20	53	1.72
60512--60814	158	1.9	158	97	0	570	45	17	14	22	1.84
66440--66477	20	1.9	20	94	0	67	31	34	15	18	1.92
66497--66587	45	2.0	46	89	2	139	27	26	17	28	1.98
72213--72265	24	2.4	22	84	12	65	28	24	16	30	1.97
72232--72360	24	5.5	24	79	11	135	23	23	20	32	1.98
75103--75193	45	2.0	46	91	2	148	25	26	20	27	1.99
80040--80166	40	3.0	43	67	15	111	37	27	13	22	1.91
79972--80166	86	2.3	83	86	2	255	38	27	13	20	1.90
80056--80495	137	3.2	136	90	0	648	35	23	15	25	1.94
80333--80434	40	2.5	41	75	12	102	34	25	16	23	1.95
80655--80694	20	2.0	21	85	5	55	40	0	0	60	0.97
80668--80713	19	2.5	19	85	3	58	47	0	0	52	1.00
80785--80827	18	2.4	18	88	3	61	39	32	18	9	1.83
82078--82110	2	17.0	2	93	6	59	48	0	0	51	1.00

Tables:   1

The End!