genome.fa.s236.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000236.1 Hibiscus syriacus cultivar Beakdansim tig00000408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104120

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2665--2706	21	2.2	19	83	12	50	52	14	0	33	1.42
10143--10193	26	2.0	26	100	0	102	25	15	15	43	1.86
15144--15192	21	2.3	21	96	0	89	38	16	8	36	1.78
15923--15969	22	2.1	22	100	0	94	19	12	31	36	1.89
21762--21794	16	2.1	16	88	11	50	75	3	3	18	1.06
21762--21812	23	2.1	25	85	7	70	70	3	9	15	1.29
27253--27284	16	2.0	16	93	0	55	34	6	6	53	1.51
33934--33976	16	2.7	16	81	0	50	32	2	30	34	1.71
34184--34208	4	6.2	4	100	0	50	76	0	0	24	0.80
33961--34331	138	2.7	136	87	3	509	46	15	15	21	1.84
36142--36182	2	21.5	2	90	9	68	48	0	0	51	1.00
44104--44144	21	2.0	21	100	0	82	17	9	9	63	1.51
52618--52674	27	2.0	29	80	12	66	52	1	0	45	1.11
52817--52893	39	2.0	39	92	0	127	44	12	10	32	1.77
53152--53223	34	2.1	35	82	12	87	25	19	8	47	1.77
55293--55336	13	3.4	13	78	12	54	13	36	22	27	1.92
59631--59764	60	2.2	60	81	2	162	31	14	18	35	1.91
60041--60087	24	2.0	24	83	8	60	31	8	2	57	1.41
60118--60236	59	2.0	61	95	3	215	42	18	5	32	1.74
69803--69864	29	2.1	30	81	3	72	43	17	1	37	1.59
70593--70651	25	2.4	25	82	5	75	54	5	0	40	1.23
71037--71069	14	2.3	15	89	5	50	42	6	0	51	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77125--77182	22	2.6	23	76	15	59	63	5	10	20	1.44
77195--77251	16	3.7	16	84	11	66	70	0	5	24	1.08
77404--77435	2	16.0	2	100	0	64	50	0	0	50	1.00
77936--77987	21	2.5	21	81	3	61	38	19	25	17	1.93
77976--78110	20	6.7	20	78	7	103	34	22	17	25	1.96
77973--78101	61	2.1	61	85	0	168	35	23	17	24	1.95
77976--78069	41	2.3	40	83	5	109	35	23	18	23	1.96
78278--78321	22	2.0	22	95	0	79	20	45	15	18	1.85
78567--78623	20	2.8	20	83	0	60	19	17	19	43	1.88
78760--78814	25	2.2	24	78	15	58	20	9	18	52	1.71
79943--79987	18	2.5	18	88	0	72	26	44	15	13	1.83
80469--80514	20	2.3	20	85	7	58	39	26	19	15	1.91
80480--80524	20	2.3	20	84	3	65	42	20	22	15	1.89
80508--80604	19	5.6	19	70	22	88	47	20	19	12	1.81
80524--80582	14	3.9	14	76	20	55	49	22	16	11	1.78
80508--80599	33	2.8	33	94	0	157	48	20	18	11	1.79
80616--80706	14	5.9	14	70	20	65	9	17	23	49	1.76
80611--80722	33	3.4	33	93	1	190	10	18	22	48	1.79
80707--80762	20	2.8	19	86	7	76	16	25	23	35	1.94
81121--81208	42	2.1	42	85	2	124	21	40	14	22	1.90
82619--82657	14	2.8	14	84	0	51	35	0	17	46	1.49
82784--82839	14	3.6	14	78	21	67	46	21	21	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82794--82830	19	1.9	19	88	0	56	51	16	21	10	1.74
82764--82842	33	2.4	33	86	2	113	44	24	20	11	1.84
83896--83949	24	2.2	24	90	0	81	22	16	20	40	1.91
84124--84158	12	2.9	12	100	0	70	74	0	25	0	0.82
86447--86577	19	7.7	19	66	23	94	43	19	22	13	1.87
86447--86573	33	3.8	33	89	4	202	43	19	22	14	1.87
86448--86580	66	2.0	66	97	0	248	42	19	22	15	1.89
86573--86614	19	2.2	19	86	0	57	19	19	21	40	1.92
86722--86755	14	2.4	14	95	0	59	44	23	0	32	1.54
88111--88175	21	3.2	20	70	10	60	20	18	40	21	1.92
88115--88237	42	2.9	41	79	7	113	22	18	36	21	1.95
88455--88639	91	2.0	90	88	6	273	47	18	11	22	1.80
90326--90447	33	3.4	36	86	7	139	45	19	22	11	1.82
90326--90452	19	7.1	19	70	20	94	44	19	23	11	1.84
90375--90430	14	3.6	14	74	21	58	42	23	25	8	1.82
90351--90447	33	2.9	33	95	1	167	43	21	24	10	1.84
90448--90514	19	3.5	19	85	2	89	10	16	25	47	1.78
91036--91127	20	4.6	20	83	5	105	23	20	18	36	1.94
91059--91262	41	5.0	41	72	10	148	28	19	19	32	1.96
91124--91179	20	2.7	21	80	5	69	42	16	23	17	1.88
91117--91189	21	3.5	21	77	3	67	36	17	23	21	1.94
91199--91250	20	2.5	21	87	3	70	21	23	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91240--91292	21	2.5	22	75	6	65	35	18	24	20	1.95
91033--91312	123	2.3	122	80	6	332	31	18	20	30	1.96
96963--97052	46	1.9	47	88	2	137	27	11	23	37	1.89

Tables:   1

The End!