genome.fa.s2360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002360.1 Hibiscus syriacus cultivar Beakdansim tig00004816_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95479

Tables:   1   2   

This is table  1  of  2  ( 122 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5724--5780	19	2.9	19	84	2	69	35	19	8	36	1.83
5855--5909	22	2.5	22	84	0	83	16	45	18	20	1.86
7774--7872	42	2.4	42	87	0	144	28	33	19	19	1.96
8237--8270	4	8.5	4	86	0	50	26	0	2	70	1.01
8414--8465	21	2.5	21	90	0	77	21	42	17	19	1.89
12390--12441	24	2.2	23	86	3	77	38	15	19	26	1.91
13272--13333	27	2.3	27	97	0	115	25	0	30	43	1.55
13359--13480	40	3.0	40	77	8	133	37	12	21	28	1.89
13453--13543	20	4.5	20	73	14	62	28	13	26	31	1.93
15641--15669	3	9.7	3	100	0	58	34	0	0	65	0.93
17637--17668	2	16.0	2	100	0	64	50	0	0	50	1.00
17799--17828	12	2.5	12	94	0	51	66	3	0	30	1.07
17873--17984	39	2.9	38	77	4	107	49	0	15	34	1.51
18387--18464	39	2.0	39	100	0	156	23	5	28	43	1.75
18465--18511	22	2.1	22	100	0	94	0	25	51	23	1.49
18473--18509	18	2.1	18	100	0	74	0	27	51	21	1.48
20373--20417	19	2.4	19	100	0	90	35	0	22	42	1.54
20800--20888	20	4.4	20	75	12	83	34	10	26	28	1.89
20818--20908	40	2.3	40	100	0	182	38	9	28	23	1.86
20840--20908	20	3.5	20	73	15	79	40	10	27	21	1.85
21557--21624	23	3.0	23	91	0	109	27	23	22	26	1.99
21750--21793	23	1.9	23	100	0	88	36	4	13	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24992--25196	102	2.0	103	87	2	295	26	22	21	29	1.99
30245--30359	20	5.7	20	80	6	106	32	24	18	25	1.97
30242--30373	61	2.2	61	84	0	174	35	23	16	24	1.95
30834--30897	20	3.2	20	86	0	83	15	18	21	43	1.87
31034--31088	25	2.2	24	78	15	58	20	7	18	54	1.66
32217--32261	18	2.5	18	88	0	72	26	44	15	13	1.83
32743--32788	20	2.3	20	84	0	56	36	23	21	17	1.94
32754--32798	20	2.3	20	84	3	65	37	20	24	17	1.93
32782--32840	19	3.4	19	68	22	65	47	20	20	11	1.81
32798--32854	14	3.7	14	72	20	51	50	22	17	8	1.73
32782--32860	33	2.4	33	97	0	149	46	21	20	11	1.81
32860--33027	19	9.6	18	71	21	108	14	20	21	44	1.86
32880--32968	14	5.6	14	71	23	61	12	16	21	49	1.78
32861--32985	33	3.8	33	96	0	223	13	19	20	46	1.83
32970--33025	20	2.8	19	86	7	76	16	25	23	35	1.94
35533--35663	19	7.1	19	80	10	155	45	19	22	12	1.83
35534--35664	52	2.4	56	84	8	171	45	19	21	12	1.84
35659--35706	20	2.5	19	77	12	53	10	16	27	45	1.80
36226--36279	20	2.7	19	88	5	72	22	18	22	37	1.95
36247--36296	20	2.5	20	86	3	64	18	26	20	36	1.95
36293--36358	20	3.2	20	76	6	62	36	15	22	25	1.93
38842--38893	14	3.9	13	80	12	61	78	0	3	17	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38898--38992	32	2.9	32	85	9	104	44	18	4	32	1.69
38922--38992	32	2.2	32	90	2	117	42	21	2	33	1.67
38967--39083	51	2.3	51	90	0	180	54	17	3	24	1.58
39156--39212	21	2.7	22	76	13	66	78	1	3	15	0.96
39170--39210	12	3.3	12	81	18	57	80	2	2	14	0.92
39167--39228	21	3.0	20	81	9	72	80	3	4	11	0.98
39237--39295	16	3.6	16	79	4	55	72	6	5	15	1.23
39442--39484	21	2.1	21	82	4	52	74	9	0	16	1.06
40038--40078	19	2.2	19	86	8	57	75	12	0	12	1.05
40045--40120	26	2.9	26	71	7	64	75	10	3	10	1.18
40083--40128	19	2.3	21	82	14	62	73	4	8	13	1.21
40195--40233	2	19.5	2	100	0	78	51	0	0	48	1.00
40697--40872	28	5.9	28	71	14	95	46	7	5	41	1.54
40738--40801	33	1.9	33	83	0	83	43	6	6	43	1.54
41583--41770	13	13.8	14	73	15	137	44	3	2	50	1.30
41556--41733	93	1.9	94	90	5	290	41	4	3	50	1.39
41683--41767	5	17.0	5	81	15	79	45	2	0	51	1.13
41555--41757	93	2.2	92	85	7	277	42	3	2	50	1.36
41596--41865	13	20.5	13	69	17	130	45	3	2	48	1.34
41596--41867	15	17.3	15	69	19	135	45	3	2	48	1.34
41838--42163	11	30.4	11	66	20	97	41	3	7	48	1.47
41965--42027	9	6.7	9	82	14	74	36	1	7	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41985--42084	13	7.3	13	68	22	62	37	2	8	53	1.42
42303--42338	11	3.3	11	88	0	54	33	2	11	52	1.51
42202--42422	107	2.1	108	83	9	274	46	3	4	45	1.41
42383--42441	26	2.2	27	88	8	86	47	1	1	49	1.21
41596--42422	2	412.0	2	63	20	164	44	4	4	46	1.44
43797--43915	57	2.1	56	83	10	145	32	20	18	28	1.96
43896--43944	19	2.6	19	84	9	57	24	28	20	26	1.99
48248--48280	16	2.0	17	88	5	50	30	0	0	69	0.88
48796--49164	20	18.5	20	84	4	449	34	26	18	20	1.96
49847--49893	24	2.0	24	87	8	69	25	14	21	38	1.92
52364--52580	19	12.4	19	77	19	240	46	18	21	13	1.83
52364--52561	33	5.8	33	81	13	192	46	19	21	13	1.83
52449--52602	33	4.5	32	73	18	150	46	18	21	14	1.84
52392--52602	52	4.0	52	97	0	395	45	17	22	14	1.84
52609--52710	19	5.6	19	85	12	151	14	23	17	44	1.86
52815--52851	14	2.6	14	91	0	65	45	21	0	32	1.52
54805--54861	14	3.7	14	77	20	60	45	22	21	10	1.82
54786--54878	33	2.8	33	95	0	168	47	21	20	10	1.80
54749--54883	19	7.6	19	76	16	128	45	23	19	11	1.82
54879--55007	19	7.3	19	75	17	125	8	17	28	45	1.77
54879--54970	33	2.8	33	93	3	150	7	18	28	45	1.76
55051--55707	93	7.1	93	98	1	1284	46	18	12	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55051--55707	185	3.5	186	98	1	1284	46	18	12	22	1.83
57408--57497	14	5.7	14	74	23	81	42	23	25	8	1.83
57400--57514	33	3.5	33	95	0	212	45	20	24	9	1.81
57407--57519	19	6.8	18	72	23	88	43	22	24	9	1.83
57531--57585	14	3.6	14	73	21	56	9	25	23	41	1.83
57515--57585	33	2.2	33	94	0	124	8	22	25	43	1.81
57526--57607	33	2.5	33	89	2	119	9	25	21	42	1.84
57538--57626	20	4.8	20	72	19	75	12	24	19	43	1.85
57706--57776	33	2.2	33	92	0	115	47	18	22	11	1.80
57958--58012	22	2.5	22	81	0	74	20	16	40	23	1.91
58159--58371	20	10.6	20	83	5	259	19	19	26	34	1.96
58158--58371	60	3.5	60	84	0	293	19	19	26	35	1.95
58427--58478	20	2.6	20	96	0	95	21	13	26	38	1.90
59692--59735	21	2.1	21	83	8	54	43	6	6	43	1.57
63672--63697	2	13.0	2	100	0	52	50	0	0	50	1.00
75838--75876	18	2.2	18	90	0	60	33	30	25	10	1.89
76141--76206	16	4.1	16	75	14	64	22	1	24	51	1.57
76451--76531	25	3.6	25	67	25	79	34	0	39	25	1.56
76465--76530	21	3.4	17	68	28	51	33	0	39	27	1.57
76459--76543	42	2.0	42	100	0	170	34	0	40	25	1.56
76459--76522	21	3.0	21	64	31	55	34	0	37	28	1.57
76476--76544	21	3.3	21	67	28	65	31	0	46	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80233--80274	18	2.3	19	79	4	50	23	14	0	61	1.32
80389--80452	3	21.3	3	82	6	76	35	0	1	62	1.05
89110--89155	22	2.1	22	84	8	58	32	15	23	28	1.95
90832--90877	14	3.4	14	87	3	67	84	2	13	0	0.71
90831--90876	18	2.5	19	86	6	60	84	2	13	0	0.71
93784--93823	13	3.1	13	81	0	53	25	5	0	70	1.08
93784--93858	26	2.8	26	80	13	82	24	6	0	69	1.12
93893--93941	25	2.0	25	87	0	71	36	6	2	55	1.37
94000--94051	3	17.3	3	80	7	52	36	0	1	61	1.07
94054--94100	17	2.7	17	78	12	51	12	6	2	78	1.02

Tables:   1   2