Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01002360.1 Hibiscus syriacus cultivar Beakdansim tig00004816_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 95479
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


File 2 of 2

Found at i:94097 original size:34 final size:35

Alignment explanation


    Indices: 94054--94119  Score: 91
    Period size: 34  Copynumber: 1.9  Consensus size: 35

      94044 ATTATTATGG

                          *                     
      94054 TTTTGTTTTCTTTATATTTATTT-TTTATTTATCTA
          1 TTTTGTTTTCTTT-GATTTATTTATTTATTTATCTA

                          *                 
      94089 TTTT-TTTTCTTTGCTTTATTTATTTATTTAT
          1 TTTTGTTTTCTTTGATTTATTTATTTATTTAT

      94120 TATATATCAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  33    7  0.25
  34   17  0.61
  35    4  0.14

ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76


Consensus pattern (35 bp):   
TTTTGTTTTCTTTGATTTATTTATTTATTTATCTA

Found at i:94179 original size:21 final size:21

Alignment explanation


    Indices: 94147--94189  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      94137 ATTATTCATG

                                 
      94147 TCATTTTTTGTATCT-TTTAT
          1 TCATTTTTTGTATCTGTTTAT

                          *       
      94167 TCATTTATTTGTATTTGTTTAT
          1 TCATTT-TTTGTATCTGTTTAT

             
      94189 T
          1 T

      94190 TTATTCATTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  20    6  0.30
  21    8  0.40
  22    6  0.30

ACGTcount: A:0.16, C:0.07, G:0.07, T:0.70


Consensus pattern (21 bp):   
TCATTTTTTGTATCTGTTTAT

Done.